RchiOBHm_Chr5g0015121

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000215
Physical Location & Seq
Reverse (-)
10462857 .. 10463354
498 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29555

Sequence Viewer

Length: 498 bp
ATGAAAACTTTTGAATCTATTTTTGGCTTCTTATTTGTTGGATCAAAGTTAGCTCACTTGGATGATGATGAATTGAAAAGTTGTTGTTTGAATCTTGAAAATGCTTTGAGAAATGGTGATGGTTCTGATATTGATGCGAAATATTTGCTTATGGAGTTACAAATTTTGCAGGAGATGCTGCCGAATGAGGCATATGAAACAGATAGGTCTTGGACATCCATTCAAATTATGGAGTTTGCTAAGAAAATGGATATGTTTCCAAGTGTTATGGTTGCCTACAGGATTTTATTGACTATACCGGTGACGGTAGCATCCGCTGAAAGAAGTTTTTCAAAATTGAAGTTATTAAAGTCTTATCTTCGGACTACCATGACTCAAGATAGGCTGAATGGATTAGCTATTTTAACCATTGAAAGAAATATGTTGGCAAATGTTGACTACAAAAAGATAATTGATGATTTTGCTTCAAGAAATGCAAAAAGACATCATTTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

165

Amino Acids

19.05

Weight (kDa)

6.83

Isoelectric Point (pI)

35.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 73 - 141 2.9e-13 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 315
AclWI GGATC 1 cut(s) 49
AcsI RAATTY 1 cut(s) 162
AgeI ACCGGT 1 cut(s) 298
AgsI TTSAA 9 cut(s) 14, 76, 91, 98, 224, 333, 340, 413, 468
AjuI GAANNNNNNNTTGG 1 cut(s) 38
AluBI AGCT 2 cut(s) 53, 398
AluI AGCT 2 cut(s) 53, 398
AlwI GGATC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 162
AsiGI ACCGGT 1 cut(s) 298
Asp700I GAANNNNTTC 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 128, 313
BbvI GCAGC 1 cut(s) 165
BccI CCATC 1 cut(s) 113
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BfmI CTRYAG 1 cut(s) 277
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
BmsI GCATC 3 cut(s) 124, 165, 320
BpuEI CTTGAG 1 cut(s) 360
BsaWI WCCGGW 1 cut(s) 298
Bse118I RCCGGY 1 cut(s) 298
BseGI GGATG 3 cut(s) 67, 215, 311
BseXI GCAGC 1 cut(s) 165
BshTI ACCGGT 1 cut(s) 298
BsiSI CCGG 1 cut(s) 299
Bsp143I GATC 1 cut(s) 41
BspACI CCGC 1 cut(s) 315
BspPI GGATC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 298
BssMI GATC 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 307
BstAPI GCANNNNNTGC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 3 cut(s) 67, 215, 311
BstKTI GATC 1 cut(s) 44
BstMBI GATC 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 165
BtsCI GGATG 3 cut(s) 67, 215, 311
Cfr10I RCCGGY 1 cut(s) 298
CspAI ACCGGT 1 cut(s) 298
CviAII CATG 1 cut(s) 370
CviJI RGCY 4 cut(s) 27, 53, 385, 398
CviKI_1 RGCY 4 cut(s) 27, 53, 385, 398
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 43
DpnII GATC 1 cut(s) 41
FaeI CATG 1 cut(s) 373
FaiI YATR 9 cut(s) 152, 193, 195, 230, 254, 269, 296, 371, 422
FatI CATG 1 cut(s) 369
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 3 cut(s) 74, 202, 298
Fsp4HI GCNGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 179
HapII CCGG 1 cut(s) 299
Hin1II CATG 1 cut(s) 373
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 3 cut(s) 14, 91, 373
HpaII CCGG 1 cut(s) 299
HphI GGTGA 2 cut(s) 128, 313
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 2 cut(s) 127, 363
Hpy188III TCNNGA 3 cut(s) 95, 377, 468
Hpy8I GTNNAC 1 cut(s) 436
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4V TGCA 2 cut(s) 169, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 1 cut(s) 373
Kzo9I GATC 1 cut(s) 41
LpnPI CCDG 3 cut(s) 155, 265, 312
Lsp1109I GCAGC 1 cut(s) 165
LweI GCATC 3 cut(s) 124, 165, 320
MaeIII GTNAC 2 cut(s) 156, 301
MalI GATC 1 cut(s) 43
MboI GATC 1 cut(s) 41
MboII GAAGA 1 cut(s) 350
MluCI AATT 5 cut(s) 71, 162, 225, 335, 450
MlyI GAGTC 1 cut(s) 367
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 328
MseI TTAA 2 cut(s) 347, 404
MslI CAYNNNNRTG 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 175
NdeI CATATG 1 cut(s) 193
NdeII GATC 1 cut(s) 41
NlaIII CATG 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 14, 91
PinAI ACCGGT 1 cut(s) 298
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 60
SaqAI TTAA 2 cut(s) 347, 404
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 1 cut(s) 41
SchI GAGTC 1 cut(s) 367
SetI ASST 3 cut(s) 55, 209, 400
SfaNI GCATC 3 cut(s) 124, 165, 320
SfcI CTRYAG 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 375
SmoI CTYRAG 1 cut(s) 375
Sse9I AATT 5 cut(s) 71, 162, 225, 335, 450
SsiI CCGC 1 cut(s) 315
SspI AATATT 1 cut(s) 143
TaaI ACNGT 1 cut(s) 307
TasI AATT 5 cut(s) 71, 162, 225, 335, 450
TfiI GAWTC 2 cut(s) 14, 91
Tru1I TTAA 2 cut(s) 347, 404
Tru9I TTAA 2 cut(s) 347, 404
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 3 cut(s) 17, 84, 210
XapI RAATTY 1 cut(s) 162
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.