Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008328.1

Orthogroup ID

OG0000215

Physical Location & Seq

Genomic Coordinates Reverse (-)

15367 .. 16554

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008328.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

atgaatgagaatgagaatgagactgagaatgatagtgaagaagcaagtcaaggtatgaatgtcaatgaaaatgtagaagcaagtcaaggtctgaatgccaatgagaatacagaatttgactttccattcgatgttgatgattcaggaaattgggataagactaaacaaaatgtcagagactttttagtcgaaagaggtcctaaaagagagaatgatttcacttttccggttgataacttggggagacatttcagtgccacacattattttcgtgtcttacctaatggtgaaaagaagaataggaggtggttagtttactcaatttctttggacaaggtattctgcttttgttgtaaattgttcaagcaagatcacaacaagactttattgggtcaatttgctaatgaaggattgaatgattggaagaatataagtgcaaggcttgcaggccatgaaagaaatagtcatcatatcaattgctttactagttggattgaattggaaacaagattgaaaaggaatgcaacaattgatcaaggtgtggaagaacaaataaagaaggagagagaacattggagacaagtactattgaggatcctaactgttgtgaaaagacttgcgaaaaataatttggcatttcgtggggataatgagaaattgtatgaggagagcaatgagaatttcttacaagttattgagatgattgctgaatttgatccagtgatgcaccagcatgttcggcgtattttaaaaaaagaaactcattaccattacttgagtcacaagatccaaaatgaaatgattcaactcctagcaaatgaggtgaaagcttccattgttgcaacaatcaaagaagtaaagtacttttcagtcatacttgattgcactccagatgtaagtcataaggaacaaatgtctcttgttgttcggtgtgttgatgttacatcaagcccgattgtggtaagagaattctttttggaatatttaaaggtggatgatacatcggggcttggactgtttaatgagctttcaaatgcactgaacactcatacacttgatattggtgatatacgaggacaagggtatgacaatggatcgaacatgagaggaaaacacaaaggtgtacagaagagacttcttgaggtgaatcctagagcattatatagccttgtggttgtcatagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FCS

Protein Analysis

395

Amino Acids

45.83

Weight (kDa)

6.04

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca	FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica	MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis	pycom05g13550 pycom11g18320
rosa_chinensis	RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora	Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii	Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa	Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha	Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana	Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AclWI	GGATC	5 cut(s)	589, 602, 710, 781, 1102
AcsI	RAATTY	4 cut(s)	113, 679, 710, 968
AfaI	GTAC	3 cut(s)	585, 863, 1125
AfiI	CCNNNNNNNGG	1 cut(s)	958
AgsI	TTSAA	6 cut(s)	364, 415, 497, 514, 806, 1032
AhlI	ACTAGT	1 cut(s)	485
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
AleI	CACNNNNGTG	1 cut(s)	1119
AluBI	AGCT	2 cut(s)	830, 1027
AluI	AGCT	2 cut(s)	830, 1027
Alw26I	GTCTC	6 cut(s)	14, 171, 238, 571, 921, 1126
AlwI	GGATC	5 cut(s)	589, 602, 710, 781, 1102
AoxI	GGCC	1 cut(s)	448
ApoI	RAATTY	4 cut(s)	113, 679, 710, 968
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
Asp700I	GAANNNNTTC	2 cut(s)	215, 801
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	4 cut(s)	299, 835, 1076, 1156
AvaII	GGWCC	1 cut(s)	197
BamHI	GGATCC	1 cut(s)	594
BclI	TGATCA	1 cut(s)	532
BcoDI	GTCTC	6 cut(s)	14, 171, 238, 571, 921, 1126
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	3 cut(s)	486, 812, 1152
BmcAI	AGTACT	2 cut(s)	585, 863
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	596
BmsI	GCATC	1 cut(s)	714
BpmI	CTGGAG	1 cut(s)	873
BpuEI	CTTGAG	2 cut(s)	796, 1160
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	958
Bse1I	ACTGG	1 cut(s)	719
Bse3DI	GCAATG	1 cut(s)	679
BseGI	GGATG	1 cut(s)	1000
BseLI	CCNNNNNNNGG	1 cut(s)	958
BseMI	GCAATG	1 cut(s)	679
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	719
BseRI	GAGGAG	1 cut(s)	680
BshFI	GGCC	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	958
BsmAI	GTCTC	6 cut(s)	14, 171, 238, 571, 921, 1126
BsmI	GAATGC	2 cut(s)	100, 526
BsnI	GGCC	1 cut(s)	450
Bsp1407I	TGTACA	1 cut(s)	1123
Bsp143I	GATC	6 cut(s)	370, 532, 594, 715, 786, 1094
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	596
BspPI	GGATC	5 cut(s)	589, 602, 710, 781, 1102
BsrDI	GCAATG	1 cut(s)	679
BsrGI	TGTACA	1 cut(s)	1123
BsrI	ACTGG	1 cut(s)	719
BssMI	GATC	6 cut(s)	370, 532, 594, 715, 786, 1094
Bst4CI	ACNGT	2 cut(s)	604, 1017
Bst6I	CTCTTC	1 cut(s)	1124
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	1123
BstC8I	GCNNGC	2 cut(s)	444, 448
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	1000
BstKTI	GATC	6 cut(s)	373, 535, 597, 718, 789, 1097
BstMAI	GTCTC	6 cut(s)	14, 171, 238, 571, 921, 1126
BstMBI	GATC	6 cut(s)	370, 532, 594, 715, 786, 1094
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 739
BstNSI	RCATGY	1 cut(s)	737
BstX2I	RGATCY	2 cut(s)	594, 786
BstYI	RGATCY	2 cut(s)	594, 786
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	1000
BtsIMutI	CAGTG	3 cut(s)	259, 726, 1037
Cac8I	GCNNGC	2 cut(s)	444, 448
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	3 cut(s)	584, 862, 1124
CviAII	CATG	3 cut(s)	452, 734, 1102
CviJI	RGCY	7 cut(s)	442, 450, 830, 951, 1009, 1027, 1167
CviKI_1	RGCY	7 cut(s)	442, 450, 830, 951, 1009, 1027, 1167
CviQI	GTAC	3 cut(s)	584, 862, 1124
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	6 cut(s)	372, 534, 596, 717, 788, 1096
DpnII	GATC	6 cut(s)	370, 532, 594, 715, 786, 1094
DraI	TTTAAA	2 cut(s)	750, 987
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	1124
EarI	CTCTTC	1 cut(s)	1124
Eco47I	GGWCC	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	197
EcoRI	GAATTC	1 cut(s)	968
FaeI	CATG	3 cut(s)	455, 737, 1105
FatI	CATG	3 cut(s)	451, 733, 1101
FbaI	TGATCA	1 cut(s)	532
FokI	GGATG	1 cut(s)	1007
FspBI	CTAG	3 cut(s)	486, 812, 1152
GsuI	CTGGAG	1 cut(s)	873
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	3 cut(s)	455, 737, 1105
HindIII	AAGCTT	1 cut(s)	828
HinfI	GANTC	4 cut(s)	140, 778, 802, 1147
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	4 cut(s)	299, 835, 1076, 1156
Hpy166II	GTNNAC	2 cut(s)	316, 1124
Hpy188I	TCNGA	2 cut(s)	93, 176
Hpy188III	TCNNGA	3 cut(s)	144, 890, 1139
Hpy8I	GTNNAC	2 cut(s)	316, 1124
HpyAV	CCTTC	2 cut(s)	401, 553
HpyCH4III	ACNGT	2 cut(s)	604, 1017
HpyCH4V	TGCA	7 cut(s)	437, 446, 524, 727, 842, 885, 1037
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 739
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	455, 737, 1105
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	6 cut(s)	370, 532, 594, 715, 786, 1094
LpnPI	CCDG	6 cut(s)	129, 240, 432, 732, 743, 903
LweI	GCATC	1 cut(s)	714
MaeI	CTAG	3 cut(s)	486, 812, 1152
MaeIII	GTNAC	2 cut(s)	779, 940
MalI	GATC	6 cut(s)	372, 534, 596, 717, 788, 1096
MboI	GATC	6 cut(s)	370, 532, 594, 715, 786, 1094
MboII	GAAGA	5 cut(s)	50, 307, 436, 557, 1141
MfeI	CAATTG	2 cut(s)	475, 528
MflI	RGATCY	2 cut(s)	594, 786
MlyI	GAGTC	1 cut(s)	787
MmeI	TCCRAC	1 cut(s)	470
MnlI	CCTC	8 cut(s)	188, 297, 585, 658, 814, 1067, 1100, 1135
MroXI	GAANNNNTTC	2 cut(s)	215, 801
MseI	TTAA	3 cut(s)	749, 986, 1020
MslI	CAYNNNNRTG	3 cut(s)	252, 732, 1119
MspI	CCGG	1 cut(s)	227
MunI	CAATTG	2 cut(s)	475, 528
Mva1269I	GAATGC	2 cut(s)	100, 526
MwoI	GCNNNNNNNGC	2 cut(s)	443, 739
NdeII	GATC	6 cut(s)	370, 532, 594, 715, 786, 1094
NlaIII	CATG	3 cut(s)	455, 737, 1105
NlaIV	GGNNCC	1 cut(s)	596
NmuCI	GTSAC	1 cut(s)	779
NspI	RCATGY	1 cut(s)	737
OliI	CACNNNNGTG	1 cut(s)	1119
PctI	GAATGC	2 cut(s)	100, 526
PdmI	GAANNNNTTC	2 cut(s)	215, 801
PfeI	GAWTC	3 cut(s)	140, 802, 1147
PleI	GAGTC	1 cut(s)	786
PpsI	GAGTC	1 cut(s)	786
PpuMI	RGGWCCY	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	596
PspPI	GGNCC	1 cut(s)	197
PspPPI	RGGWCCY	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	594, 786
RsaI	GTAC	3 cut(s)	585, 863, 1125
RsaNI	GTAC	3 cut(s)	584, 862, 1124
RseI	CAYNNNNRTG	3 cut(s)	252, 732, 1119
SaqAI	TTAA	3 cut(s)	749, 986, 1020
Sau3AI	GATC	6 cut(s)	370, 532, 594, 715, 786, 1094
Sau96I	GGNCC	1 cut(s)	197
ScaI	AGTACT	2 cut(s)	585, 863
SchI	GAGTC	1 cut(s)	787
SfaNI	GCATC	1 cut(s)	714
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	3 cut(s)	252, 732, 1119
SmlI	CTYRAG	2 cut(s)	775, 1139
SmoI	CTYRAG	2 cut(s)	775, 1139
SpeI	ACTAGT	1 cut(s)	485
SspI	AATATT	1 cut(s)	983
SspMI	CTAG	3 cut(s)	486, 812, 1152
TaaI	ACNGT	2 cut(s)	604, 1017
TaqI	TCGA	3 cut(s)	129, 189, 1097
TatI	WGTACW	3 cut(s)	583, 861, 1123
TfiI	GAWTC	3 cut(s)	140, 802, 1147
Tru1I	TTAA	3 cut(s)	749, 986, 1020
Tru9I	TTAA	3 cut(s)	749, 986, 1020
TscAI	CASTG	3 cut(s)	259, 726, 1044
TseFI	GTSAC	1 cut(s)	779
Tsp45I	GTSAC	1 cut(s)	779
TspDTI	ATGAA	6 cut(s)	17, 71, 81, 420, 468, 810
TspRI	CASTG	3 cut(s)	259, 726, 1044
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	4 cut(s)	113, 679, 710, 968
XceI	RCATGY	1 cut(s)	737
XmnI	GAANNNNTTC	2 cut(s)	215, 801
XspI	CTAG	3 cut(s)	486, 812, 1152
ZrmI	AGTACT	2 cut(s)	585, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.