Rroxscaffold_5G00337920

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000215
Physical Location & Seq
Forward (+)
6102861 .. 6107187
4327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00337920.1

Sequence Viewer

Length: 537 bp
ATGGTTAAAGAGCCACAGTCCAAAATCGAAACTGTTGTCAGTGAGCAACATAAACATGAGGAACTGAATGATAATGAAAACGTTGGTGAGGAGATTGTAGAAGACAAAGAAGAGAGTCGCGTTTCCAATTCTATCACTGAGCCTAGAAATCTCTGCTCCCTCCCTGTAAAAACCTGTCCTGGGCGTAAGATTAGGAAATACCCTTCTGGACACCAAAAACCTATAAAGAAGAAAAGAATTGAAGAGTTGGTTCAATCTCAAAGAGGAGCTCTTGATAGATTTATTGTTAAAGATCCACAATCTTCAGTTGAAGGTTTAGTCCATGGACAGCGACATGATGAGGAATGGAAAGATGATGAGTTTGCTATGGAGGAATGCAAAGATGTTAATGGAGGGTCACGACATGGAGCCACCTCCGAAAGTAGAAGGTTTCATAAAAGGCTTCCCATTTGGGATGGTAACATTATGATTTCTGATTTCTTCATCACCGATAGTTGTAAGAAAGGCTCTCCGGAACTAATCAAAGAAATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

178

Amino Acids

20.45

Weight (kDa)

6.01

Isoelectric Point (pI)

71.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 511
AclI AACGTT 1 cut(s) 81
AclWI GGATC 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 3 cut(s) 242, 254, 311
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw21I GWGCWC 1 cut(s) 271
AlwI GGATC 1 cut(s) 287
Aor13HI TCCGGA 1 cut(s) 511
ArsI GACNNNNNNTTYG 2 cut(s) 21, 53
AsuHPI GGTGA 2 cut(s) 98, 478
BanII GRGCYC 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 271
BccI CCATC 1 cut(s) 449
BciT130I CCWGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 144
Bme1390I CCNGG 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 179, 322
BsaWI WCCGGW 1 cut(s) 511
Bsc4I CCNNNNNNNGG 1 cut(s) 180
BseAI TCCGGA 1 cut(s) 511
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 179, 322
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 129
BseRI GAGGAG 2 cut(s) 104, 279
Bsh1236I CGCG 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 271
BsiSI CCGG 1 cut(s) 512
BslI CCNNNNNNNGG 1 cut(s) 180
BsmI GAATGC 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 271
Bsp13I TCCGGA 1 cut(s) 511
Bsp143I GATC 1 cut(s) 292
Bsp19I CCATGG 1 cut(s) 322
BspCNI CTCAG 1 cut(s) 130
BspEI TCCGGA 1 cut(s) 511
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 409
BspPI GGATC 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 179, 322
BssMI GATC 1 cut(s) 292
BssT1I CCWWGG 1 cut(s) 322
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 18, 34
Bst6I CTCTTC 2 cut(s) 105, 237
BstDEI CTNAG 1 cut(s) 138
BstDSI CCRYGG 1 cut(s) 322
BstF5I GGATG 1 cut(s) 460
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 178
BstUI CGCG 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BtgI CCRYGG 1 cut(s) 322
BtsCI GGATG 1 cut(s) 460
BtsIMutI CAGTG 2 cut(s) 46, 135
CviAII CATG 4 cut(s) 56, 323, 335, 404
CviJI RGCY 6 cut(s) 13, 142, 269, 410, 442, 507
CviKI_1 RGCY 6 cut(s) 13, 142, 269, 410, 442, 507
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eam1104I CTCTTC 2 cut(s) 105, 237
EarI CTCTTC 2 cut(s) 105, 237
Ecl136II GAGCTC 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 288
EcoICRI GAGCTC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 4 cut(s) 59, 326, 338, 407
FaiI YATR 9 cut(s) 51, 57, 224, 324, 336, 368, 405, 435, 467
FatI CATG 4 cut(s) 55, 322, 334, 403
FokI GGATG 1 cut(s) 467
FriOI GRGCYC 1 cut(s) 271
FspBI CTAG 1 cut(s) 144
HapII CCGG 1 cut(s) 512
Hin1II CATG 4 cut(s) 59, 326, 338, 407
HinfI GANTC 1 cut(s) 115
HpaII CCGG 1 cut(s) 512
HphI GGTGA 2 cut(s) 98, 478
Hpy188I TCNGA 2 cut(s) 418, 475
Hpy188III TCNNGA 4 cut(s) 207, 272, 399, 512
HpyAV CCTTC 3 cut(s) 213, 305, 420
HpyCH4III ACNGT 2 cut(s) 18, 34
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 378
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 4 cut(s) 59, 326, 338, 407
Kpn2I TCCGGA 1 cut(s) 511
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 3 cut(s) 161, 266, 407
LpnPI CCDG 6 cut(s) 165, 177, 187, 192, 192, 525
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 396, 458
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 6 cut(s) 113, 122, 241, 254, 294, 472
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 3 cut(s) 127, 237, 528
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 8 cut(s) 52, 82, 170, 257, 334, 364, 386, 424
MroI TCCGGA 1 cut(s) 511
MseI TTAA 3 cut(s) 6, 288, 387
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 120
NcoI CCATGG 1 cut(s) 322
NdeII GATC 1 cut(s) 292
NlaIII CATG 4 cut(s) 59, 326, 338, 407
NlaIV GGNNCC 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 396
PctI GAATGC 1 cut(s) 380
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 271
Psp1406I AACGTT 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 409
PsuI RGATCY 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 54
SacI GAGCTC 1 cut(s) 271
SaqAI TTAA 3 cut(s) 6, 288, 387
Sau3AI GATC 1 cut(s) 292
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 1 cut(s) 271
SetI ASST 7 cut(s) 84, 176, 223, 271, 316, 416, 431
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 3 cut(s) 127, 237, 528
SspMI CTAG 1 cut(s) 144
SstI GAGCTC 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 178
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 2 cut(s) 18, 34
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 27
TasI AATT 3 cut(s) 127, 237, 528
Tru1I TTAA 3 cut(s) 6, 288, 387
Tru9I TTAA 3 cut(s) 6, 288, 387
TscAI CASTG 2 cut(s) 46, 142
TseFI GTSAC 1 cut(s) 396
Tsp45I GTSAC 1 cut(s) 396
TspDTI ATGAA 3 cut(s) 90, 422, 472
TspRI CASTG 2 cut(s) 46, 142
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.