FvH4_1g08455

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000215
Physical Location & Seq
Forward (+)
4505467 .. 4506580
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08455.t1

Sequence Viewer

Length: 600 bp
ATGGAAGGGCAGGAAGGCCTCAAGAGGTCCCAATTTTCAAGCAGAGAATTTGGAATGTCTCGTACTAGGAAACATCCTGCTTTAGCAAGAAGATATCCTTCTGGACATCAGAAGCGTAAAAAAAGAAGCAAAATAGAAAAATTTGTAGAGTCTCAGAGTGGGGCAATGGATCAATTTGTTGAAATAATACCGGGAAATCCGTCACTTAAAGATTTAGCTAATGAAGAAAAAAATGTTGGTGATGAATTAGATGATGGGTTAGCCTTGGAAAATAATGTGCAGGAAGATAAGAATGAGAATGGAGGCAATCAAATTGATGATGGCTTGCACTCTGAAAATGTTGATGACCAGGAAGATGAGAATGAGGTTGGAGGCAATCCAATTGATGGTAGCTTAGACTTTCACAATGTTGATGACCAAGGAGATGAGAATGAGGTTGGAGGCAATCAAATTGATAATGCCTCTGGTTTTGAAAATGCTGATGACAAGGAAGATGGCAATCAAGTTGATGATGGGATAAACTTTGATCATGTAAGTGGTGATGCCAATGACATTGGTCCCTCTGAAACTGATGATGATGTGTGGAAAAAGGTCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

200

Amino Acids

21.96

Weight (kDa)

4.28

Isoelectric Point (pI)

38.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 386
AclWI GGATC 1 cut(s) 177
AcsI RAATTY 2 cut(s) 47, 140
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 3 cut(s) 39, 182, 473
AjnI CCWGG 1 cut(s) 348
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
AluBI AGCT 2 cut(s) 218, 393
AluI AGCT 2 cut(s) 218, 393
Alw26I GTCTC 2 cut(s) 63, 156
AlwI GGATC 1 cut(s) 177
AoxI GGCC 1 cut(s) 16
ApoI RAATTY 2 cut(s) 47, 140
AspS9I GGNCC 3 cut(s) 27, 557, 592
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 251, 551
AvaII GGWCC 3 cut(s) 27, 557, 592
BccI CCATC 5 cut(s) 248, 314, 380, 488, 506
BciT130I CCWGG 1 cut(s) 350
BclI TGATCA 1 cut(s) 526
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 63, 156
BfaI CTAG 1 cut(s) 66
Bme1390I CCNGG 2 cut(s) 192, 350
Bme18I GGWCC 3 cut(s) 27, 557, 592
BmgT120I GGNCC 3 cut(s) 27, 557, 592
BmiI GGNNCC 2 cut(s) 29, 559
BmrFI CCNGG 2 cut(s) 192, 350
BmsI GCATC 1 cut(s) 532
BoxI GACNNNNGTC 1 cut(s) 555
BpuEI CTTGAG 1 cut(s) 5
BpuMI CCSGG 1 cut(s) 192
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 264, 418
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 171
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 264, 418
BseGI GGATG 1 cut(s) 73
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 167
BsgI GTGCAG 1 cut(s) 299
BshFI GGCC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 2 cut(s) 13, 543
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 2 cut(s) 63, 156
BsmFI GGGAC 2 cut(s) 13, 543
BsnI GGCC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 169, 526
BspANI GGCC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 2 cut(s) 29, 559
BspPI GGATC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 171
BssECI CCNNGG 2 cut(s) 264, 418
BssMI GATC 2 cut(s) 169, 526
BssT1I CCWWGG 2 cut(s) 264, 418
Bst2UI CCWGG 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 2 cut(s) 153, 394
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 2 cut(s) 172, 529
BstMAI GTCTC 2 cut(s) 63, 156
BstMBI GATC 2 cut(s) 169, 526
BstNI CCWGG 1 cut(s) 350
BstPAI GACNNNNGTC 1 cut(s) 555
BstSCI CCNGG 2 cut(s) 190, 348
BsuRI GGCC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 326
Cfr13I GGNCC 3 cut(s) 27, 557, 592
Csp6I GTAC 1 cut(s) 63
CviAII CATG 1 cut(s) 530
CviJI RGCY 5 cut(s) 18, 218, 263, 324, 393
CviKI_1 RGCY 5 cut(s) 18, 218, 263, 324, 393
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 2 cut(s) 153, 394
DpnI GATC 2 cut(s) 171, 528
DpnII GATC 2 cut(s) 169, 526
Eco130I CCWWGG 2 cut(s) 264, 418
Eco147I AGGCCT 1 cut(s) 18
Eco32I GATATC 1 cut(s) 95
Eco47I GGWCC 3 cut(s) 27, 557, 592
EcoO109I RGGNCCY 2 cut(s) 27, 592
EcoRII CCWGG 1 cut(s) 348
EcoRV GATATC 1 cut(s) 95
EcoT14I CCWWGG 2 cut(s) 264, 418
ErhI CCWWGG 2 cut(s) 264, 418
FaeI CATG 1 cut(s) 533
FaiI YATR 2 cut(s) 531, 598
FalI AAGNNNNNCTT 2 cut(s) 82, 114
FaqI GGGAC 2 cut(s) 13, 543
FatI CATG 1 cut(s) 529
FbaI TGATCA 1 cut(s) 526
FokI GGATG 1 cut(s) 60
FspBI CTAG 1 cut(s) 66
HaeIII GGCC 1 cut(s) 18
HapII CCGG 1 cut(s) 191
Hin1II CATG 1 cut(s) 533
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 191
HphI GGTGA 2 cut(s) 251, 551
Hpy188I TCNGA 4 cut(s) 111, 156, 334, 565
Hpy188III TCNNGA 2 cut(s) 22, 102
HpyAV CCTTC 2 cut(s) 8, 108
HpyCH4V TGCA 2 cut(s) 280, 328
HpyF3I CTNAG 2 cut(s) 153, 394
Hsp92II CATG 1 cut(s) 533
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 2 cut(s) 169, 526
LpnPI CCDG 7 cut(s) 87, 90, 204, 266, 335, 362, 450
LweI GCATC 1 cut(s) 532
MaeI CTAG 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 201
MalI GATC 2 cut(s) 171, 528
MboI GATC 2 cut(s) 169, 526
MboII GAAGA 5 cut(s) 102, 236, 296, 365, 503
MfeI CAATTG 1 cut(s) 381
MluCI AATT 8 cut(s) 32, 47, 140, 173, 245, 312, 381, 450
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 2 cut(s) 349, 418
MnlI CCTC 9 cut(s) 18, 29, 296, 358, 365, 427, 434, 472, 571
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 534
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 2 cut(s) 192, 350
MunI CAATTG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 350
NciI CCSGG 1 cut(s) 192
NdeII GATC 2 cut(s) 169, 526
NlaIII CATG 1 cut(s) 533
NlaIV GGNNCC 2 cut(s) 29, 559
NmuCI GTSAC 1 cut(s) 201
PceI AGGCCT 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 386
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PpuMI RGGWCCY 2 cut(s) 27, 592
PshAI GACNNNNGTC 1 cut(s) 555
Psp5II RGGWCCY 2 cut(s) 27, 592
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 29, 559
PspPI GGNCC 3 cut(s) 27, 557, 592
PspPPI RGGWCCY 2 cut(s) 27, 592
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 534
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 2 cut(s) 169, 526
Sau96I GGNCC 3 cut(s) 27, 557, 592
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 192, 350
SetI ASST 6 cut(s) 29, 220, 369, 395, 438, 594
SfaNI GCATC 1 cut(s) 532
SinI GGWCC 3 cut(s) 27, 557, 592
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 8 cut(s) 32, 47, 140, 173, 245, 312, 381, 450
SseBI AGGCCT 1 cut(s) 18
SspMI CTAG 1 cut(s) 66
StuI AGGCCT 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 190, 348
StyI CCWWGG 2 cut(s) 264, 418
TasI AATT 8 cut(s) 32, 47, 140, 173, 245, 312, 381, 450
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseFI GTSAC 1 cut(s) 201
Tsp45I GTSAC 1 cut(s) 201
TspDTI ATGAA 2 cut(s) 237, 258
TspGWI ACGGA 1 cut(s) 189
Van91I CCANNNNNTGG 1 cut(s) 386
VpaK11BI GGWCC 3 cut(s) 27, 557, 592
XapI RAATTY 2 cut(s) 47, 140
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.