AT3G29638

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000215
Physical Location & Seq
Forward (+)
11473109 .. 11475559
2451 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G29638.1

Sequence Viewer

Length: 1344 bp
ATGTTGAGGTATGTTAAAAGATCAAAATCTGGTAAGTTTGATGAAAGTGATAGAGTTGGTGATGAGAATGAGAATCAAGAAGATGATAAGGCCGGAGAAGAAACAATGGCTGACTGTGACAAAGAGGAATGTGAAAAAATCTCTAAAGAAGATGATGTGCCTGTGGATTTAGAAAAACCTCCGGAGATTTCGATTTTACAATTTACAGATCCTGCAAATTGGAGAAAAAATGATCAGGGATTAAAAGATTATCTAGTGCAAAAAAGTTCTATGGAAAGAGTTGAAAGAGACTACGTTTTCCCCAAAAATGATGTTGATGGGAACAAGATGCCACTCAGTTGTCAAGCACATGATTCAACGATTGGAGGAATACTTTTTGCATTGGTGAAAAATCTTGCTAAGCAGTATATAGCATTCCGTGGAACTAAGGAGAAGATTGATGAGAGAAATAATGGAAACTTCTTGAGATTCATTGAAACGTTTGAAGAGTTTGATTCACTTACGCAGGAGCATATCAAACGAGTTAAAGAAGGACTTTTTGAGTTGCTTTGTTATACATTCGGTGATCTCAAGTTGAAAATCGATGATGTGAGAGGACAAGGCTATGATAATGGATCCAATATCAAAGGAAAACACAAAAGAGTACAAAAGCGATTGCTTGATATCAATTCAATAGCATTTTATGCGTCATGTGGTTGCCACAGTCTTAATTTGGCACTTGCTGATATGGCCAAATCATCTTCAAAAGCGATTTTATTCTTTGGAATATCCAACGCATCTACTGCTTGTTTTCATCCTTTACACCTAGAAAGTGTTCAAGAAATTCGTTTTCAAGATCCAAAAATAAGAGATGCTTTAGACTATTTGGCTGAAAATTTTGATGATCCTAAAGCTCGCAGCGATGCCGACGCTCTTGCTACAAGTGAAACTCATGGAATCGGAAGGTTTGAGTTCTTATTTGGTTTGGTTATTTGGTATGATCTTTTATTTATCGTAAACACGGTAAGTAAGGTGATGCAAATAGAGAATATTGCTATTGATACTGCTCTTGTTCAACTAAAGGGGTTGCTCTCGTATTTTAGAAACTACAGAGAAGTGGAGAAACATGGTGAAAGTGTGATGCTAAGCGAGGAAGAGAGTTTCAAAATCGATTATTTCTATACAATCGTGGATCAAGCTATAGTATCTCTTCAAGCGAGGTTTGAACAATTTGAAGAGTATGGGAAACATTTTGGATTCTTGATTGATTTGAGAAAGCTCAAAAGAGAAACTGAAGATGGATTAAAAGCATCATGTATCAATCTTGAAACTTCTCTTAAACATGGAAAGAATTCAGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

447

Amino Acids

51.21

Weight (kDa)

5.21

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 181
AclI AACGTT 1 cut(s) 479
AclWI GGATC 6 cut(s) 203, 609, 622, 830, 878, 1179
AcoI YGGCCR 1 cut(s) 729
AcsI RAATTY 3 cut(s) 822, 874, 1330
AcuI CTGAAG 1 cut(s) 1293
AfaI GTAC 1 cut(s) 645
AluBI AGCT 3 cut(s) 893, 1178, 1258
AluI AGCT 3 cut(s) 893, 1178, 1258
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 6 cut(s) 203, 609, 622, 830, 878, 1179
AlwNI CAGNNNCTG 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 2 cut(s) 90, 729
ApeKI GCWGC 1 cut(s) 897
ApoI RAATTY 3 cut(s) 822, 874, 1330
Asp700I GAANNNNTTC 2 cut(s) 813, 1330
AsuHPI GGTGA 5 cut(s) 71, 397, 575, 1024, 1121
BalI TGGCCA 1 cut(s) 731
BamHI GGATCC 1 cut(s) 614
BbvI GCAGC 1 cut(s) 909
BccI CCATC 2 cut(s) 311, 1271
BcgI CGANNNNNNTGC 2 cut(s) 896, 930
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 2 cut(s) 254, 806
BfmI CTRYAG 2 cut(s) 1087, 1179
BisI GCNGC 1 cut(s) 898
BlpI GCTNAGC 2 cut(s) 399, 1124
BlsI GCNGC 1 cut(s) 899
BmiI GGNNCC 1 cut(s) 616
BmsI GCATC 7 cut(s) 318, 785, 841, 892, 1005, 1110, 1298
Bpu1102I GCTNAGC 2 cut(s) 399, 1124
BpuEI CTTGAG 2 cut(s) 484, 554
Bsa29I ATCGAT 2 cut(s) 582, 1149
BsaBI GATNNNNATC 1 cut(s) 25
BsaJI CCNNGG 1 cut(s) 418
BsaWI WCCGGW 1 cut(s) 181
Bse8I GATNNNNATC 1 cut(s) 25
BseAI TCCGGA 1 cut(s) 181
BseCI ATCGAT 2 cut(s) 582, 1149
BseDI CCNNGG 1 cut(s) 418
BseGI GGATG 1 cut(s) 793
BseJI GATNNNNATC 1 cut(s) 25
BseMII CTCAG 1 cut(s) 349
BseXI GCAGC 1 cut(s) 909
BshFI GGCC 2 cut(s) 92, 731
BshVI ATCGAT 2 cut(s) 582, 1149
BsiSI CCGG 2 cut(s) 93, 182
BsmAI GTCTC 1 cut(s) 282
BsmI GAATGC 1 cut(s) 413
BsnI GGCC 2 cut(s) 92, 731
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 9 cut(s) 20, 208, 232, 565, 614, 835, 883, 979, 1171
Bsp1720I GCTNAGC 2 cut(s) 399, 1124
BspANI GGCC 2 cut(s) 92, 731
BspCNI CTCAG 1 cut(s) 348
BspDI ATCGAT 2 cut(s) 582, 1149
BspEI TCCGGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 616
BspPI GGATC 6 cut(s) 203, 609, 622, 830, 878, 1179
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 9 cut(s) 20, 208, 232, 565, 614, 835, 883, 979, 1171
Bst4CI ACNGT 3 cut(s) 116, 704, 1003
Bst6I CTCTTC 4 cut(s) 480, 1128, 1194, 1209
BstAPI GCANNNNNTGC 2 cut(s) 683, 782
BstC8I GCNNGC 1 cut(s) 895
BstDEI CTNAG 4 cut(s) 335, 399, 426, 1124
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 1 cut(s) 793
BstKTI GATC 9 cut(s) 23, 211, 235, 568, 617, 838, 886, 982, 1174
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 9 cut(s) 20, 208, 232, 565, 614, 835, 883, 979, 1171
BstMWI GCNNNNNNNGC 3 cut(s) 683, 728, 782
BstSFI CTRYAG 2 cut(s) 1087, 1179
BstV1I GCAGC 1 cut(s) 909
BstX2I RGATCY 3 cut(s) 208, 614, 835
BstYI RGATCY 3 cut(s) 208, 614, 835
Bsu15I ATCGAT 2 cut(s) 582, 1149
BsuRI GGCC 2 cut(s) 92, 731
BsuTUI ATCGAT 2 cut(s) 582, 1149
BtgI CCRYGG 1 cut(s) 418
BtgZI GCGATG 1 cut(s) 915
BtsCI GGATG 1 cut(s) 793
Cac8I GCNNGC 1 cut(s) 895
CaiI CAGNNNCTG 1 cut(s) 212
ClaI ATCGAT 2 cut(s) 582, 1149
CseI GACGC 2 cut(s) 675, 917
Csp6I GTAC 1 cut(s) 644
CviAII CATG 6 cut(s) 350, 690, 932, 1106, 1293, 1322
CviJI RGCY 8 cut(s) 92, 110, 603, 731, 869, 893, 1178, 1258
CviKI_1 RGCY 8 cut(s) 92, 110, 603, 731, 869, 893, 1178, 1258
CviQI GTAC 1 cut(s) 644
DdeI CTNAG 4 cut(s) 335, 399, 426, 1124
DpnI GATC 9 cut(s) 22, 210, 234, 567, 616, 837, 885, 981, 1173
DpnII GATC 9 cut(s) 20, 208, 232, 565, 614, 835, 883, 979, 1171
EaeI YGGCCR 1 cut(s) 729
Eam1104I CTCTTC 4 cut(s) 480, 1128, 1194, 1209
EarI CTCTTC 4 cut(s) 480, 1128, 1194, 1209
Eco32I GATATC 1 cut(s) 664
Eco57I CTGAAG 1 cut(s) 1293
EcoRI GAATTC 1 cut(s) 1330
EcoRV GATATC 1 cut(s) 664
FaeI CATG 6 cut(s) 353, 693, 935, 1109, 1296, 1325
FalI AAGNNNNNCTT 4 cut(s) 519, 551, 838, 870
FatI CATG 6 cut(s) 349, 689, 931, 1105, 1292, 1321
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 898
FokI GGATG 1 cut(s) 780
Fsp4HI GCNGC 1 cut(s) 898
FspBI CTAG 2 cut(s) 254, 806
GluI GCNGC 1 cut(s) 898
HaeIII GGCC 2 cut(s) 92, 731
HapII CCGG 2 cut(s) 93, 182
HgaI GACGC 2 cut(s) 675, 917
Hin1II CATG 6 cut(s) 353, 693, 935, 1109, 1296, 1325
HinfI GANTC 6 cut(s) 73, 353, 468, 494, 936, 1236
HpaII CCGG 2 cut(s) 93, 182
HphI GGTGA 5 cut(s) 71, 397, 575, 1024, 1121
Hpy166II GTNNAC 1 cut(s) 997
Hpy188I TCNGA 2 cut(s) 941, 1336
Hpy188III TCNNGA 7 cut(s) 77, 182, 463, 818, 833, 1240, 1304
Hpy8I GTNNAC 1 cut(s) 997
Hpy99I CGWCG 1 cut(s) 911
HpyAV CCTTC 2 cut(s) 524, 936
HpyCH4III ACNGT 3 cut(s) 116, 704, 1003
HpyCH4IV ACGT 2 cut(s) 294, 479
HpyCH4V TGCA 4 cut(s) 215, 259, 380, 1018
HpyF10VI GCNNNNNNNGC 3 cut(s) 683, 728, 782
HpyF3I CTNAG 4 cut(s) 335, 399, 426, 1124
HpySE526I ACGT 2 cut(s) 294, 479
Hsp92II CATG 6 cut(s) 353, 693, 935, 1109, 1296, 1325
Kpn2I TCCGGA 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 9 cut(s) 20, 208, 232, 565, 614, 835, 883, 979, 1171
LmnI GCTCC 1 cut(s) 508
LpnPI CCDG 7 cut(s) 15, 106, 174, 195, 221, 225, 491
Lsp1109I GCAGC 1 cut(s) 909
LweI GCATC 7 cut(s) 318, 785, 841, 892, 1005, 1110, 1298
MaeI CTAG 2 cut(s) 254, 806
MaeII ACGT 2 cut(s) 294, 479
MaeIII GTNAC 1 cut(s) 116
MalI GATC 9 cut(s) 22, 210, 234, 567, 616, 837, 885, 981, 1173
MboI GATC 9 cut(s) 20, 208, 232, 565, 614, 835, 883, 979, 1171
MflI RGATCY 3 cut(s) 208, 614, 835
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 8 cut(s) 200, 217, 667, 709, 822, 874, 1208, 1330
MluNI TGGCCA 1 cut(s) 731
MmeI TCCRAC 1 cut(s) 795
MnlI CCTC 6 cut(s) 118, 189, 359, 587, 1123, 1191
Mox20I TGGCCA 1 cut(s) 731
MroI TCCGGA 1 cut(s) 181
MroXI GAANNNNTTC 2 cut(s) 813, 1330
MscI TGGCCA 1 cut(s) 731
MseI TTAA 6 cut(s) 15, 242, 525, 708, 1283, 1317
Msp20I TGGCCA 1 cut(s) 731
MspI CCGG 2 cut(s) 93, 182
Mva1269I GAATGC 1 cut(s) 413
MwoI GCNNNNNNNGC 3 cut(s) 683, 728, 782
NdeII GATC 9 cut(s) 20, 208, 232, 565, 614, 835, 883, 979, 1171
NlaIII CATG 6 cut(s) 353, 693, 935, 1109, 1296, 1325
NlaIV GGNNCC 1 cut(s) 616
NmuCI GTSAC 1 cut(s) 116
PctI GAATGC 1 cut(s) 413
PdmI GAANNNNTTC 2 cut(s) 813, 1330
PfeI GAWTC 6 cut(s) 73, 353, 468, 494, 936, 1236
PkrI GCNGC 1 cut(s) 899
Psp1406I AACGTT 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 616
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 3 cut(s) 208, 614, 835
RsaI GTAC 1 cut(s) 645
RsaNI GTAC 1 cut(s) 644
SaqAI TTAA 6 cut(s) 15, 242, 525, 708, 1283, 1317
SatI GCNGC 1 cut(s) 898
Sau3AI GATC 9 cut(s) 20, 208, 232, 565, 614, 835, 883, 979, 1171
SfaNI GCATC 7 cut(s) 318, 785, 841, 892, 1005, 1110, 1298
SfcI CTRYAG 2 cut(s) 1087, 1179
SmlI CTYRAG 2 cut(s) 463, 569
SmoI CTYRAG 2 cut(s) 463, 569
Sse9I AATT 8 cut(s) 200, 217, 667, 709, 822, 874, 1208, 1330
SspI AATATT 1 cut(s) 1030
SspMI CTAG 2 cut(s) 254, 806
TaaI ACNGT 3 cut(s) 116, 704, 1003
TaiI ACGT 2 cut(s) 297, 482
TaqI TCGA 3 cut(s) 191, 582, 1149
TasI AATT 8 cut(s) 200, 217, 667, 709, 822, 874, 1208, 1330
TatI WGTACW 1 cut(s) 643
TfiI GAWTC 6 cut(s) 73, 353, 468, 494, 936, 1236
Tru1I TTAA 6 cut(s) 15, 242, 525, 708, 1283, 1317
Tru9I TTAA 6 cut(s) 15, 242, 525, 708, 1283, 1317
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 897
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 57, 460, 782
TspGWI ACGGA 1 cut(s) 407
XapI RAATTY 3 cut(s) 822, 874, 1330
XmnI GAANNNNTTC 2 cut(s) 813, 1330
XspI CTAG 2 cut(s) 254, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.