RchiOBHm_Chr6g0288531

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000215
Physical Location & Seq
Reverse (-)
51760245 .. 51762442
2198 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25889

Sequence Viewer

Length: 834 bp
ATGATTATATGGTATGAATTGTTACATGCTATTAACAATGTCAGCAAAGTTCTGCAAACTGAAGATATGCATGTTGATACTGCCATCAAAGAATTGGAACGTCTTCTTTCATTTCTTCAAAAGTTTAGAGAAACTGGATTTGAGGAGTCCTTGATTGAAGCTAAAGAGATTGCAAGTGAGATGGGGATTGAACCGGTATTCATGGAAAAATGGACAATTCACAAAAAGAGACAATTTAGTGAAAGCTCTAGCGAAGCGGTGACACAATCAGCTGCAGAATCCTTTAAAGTCAATTATTTTCTCTACATAGTTGATCAAGCTATTTCCTCATTCAAAACCAGGTTTGAGCAATTTAAGACTTTTGAAGAGAATTTTGGGCTTTTGTTTGATTTGGACAAGTTAAGGTCTGCAGATAGAGATAGTTTGAAGAGTTTTTGTGCTAACCTAACAAATTTATTGAAGCATGGCGAGATTTCTGATCTTAATGAAGATGATCTATATCATGACTTACGAATGTTGAGTGAAGATTTACCCAATGAAACAAAAAGAGCTATTGATGTGTTGAATTACATAAAAGAAGTTGATGGCTGTTATCCAAATGCTTGGATTGCTTATAGGATTTTGCTAACTATACCAGTCACAGTTGCCTCTGCAGAAAGAAGTTTTTCAAAGTTGAAATTGATCAAATCTTACCTTCGGTCTACTATGTCACAAGAGAGATTGAGTGGTTTGGCTATGATATCTATTGAAAAAGATATTGTTGGAAAACTTGATTATGTAAATTTGATTAGTACTTTTGCATCTAAAAATGCAAGACGAGTCATATTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

277

Amino Acids

32.06

Weight (kDa)

5.43

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 174 - 252 3.6e-20 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 701
AciI CCGC 1 cut(s) 257
AcsI RAATTY 3 cut(s) 370, 451, 781
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 1 cut(s) 793
AgeI ACCGGT 1 cut(s) 193
AjnI CCWGG 1 cut(s) 338
AjuI GAANNNNNNNTTGG 2 cut(s) 357, 389
AluBI AGCT 5 cut(s) 161, 246, 272, 320, 551
AluI AGCT 5 cut(s) 161, 246, 272, 320, 551
Alw26I GTCTC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 3 cut(s) 370, 451, 781
AsiGI ACCGGT 1 cut(s) 193
Asp700I GAANNNNTTC 2 cut(s) 102, 664
AsuHPI GGTGA 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 259
BccI CCATC 3 cut(s) 92, 175, 578
BciT130I CCWGG 1 cut(s) 340
BclI TGATCA 2 cut(s) 313, 681
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 3 cut(s) 273, 408, 651
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmcAI AGTACT 1 cut(s) 793
Bme1390I CCNGG 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 809
BpiI GAAGAC 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 498
BsaWI WCCGGW 1 cut(s) 193
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 2 cut(s) 139, 635
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 1 cut(s) 340
BseJI GATNNNNATC 1 cut(s) 498
BseNI ACTGG 2 cut(s) 139, 635
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 259
BshTI ACCGGT 1 cut(s) 193
BsiSI CCGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 223
Bsp143I GATC 4 cut(s) 313, 478, 493, 681
BspACI CCGC 1 cut(s) 257
BspHI TCATGA 1 cut(s) 502
BspMAI CTGCAG 3 cut(s) 277, 412, 655
BsrFI RCCGGY 1 cut(s) 193
BsrI ACTGG 2 cut(s) 139, 635
BssAI RCCGGY 1 cut(s) 193
BssMI GATC 4 cut(s) 313, 478, 493, 681
Bst2UI CCWGG 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 643
Bst6I CTCTTC 2 cut(s) 360, 422
BstKTI GATC 4 cut(s) 316, 481, 496, 684
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 4 cut(s) 313, 478, 493, 681
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstNI CCWGG 1 cut(s) 340
BstNSI RCATGY 2 cut(s) 29, 74
BstSCI CCNGG 1 cut(s) 338
BstSFI CTRYAG 3 cut(s) 273, 408, 651
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 603
CciI TCATGA 1 cut(s) 502
Cfr10I RCCGGY 1 cut(s) 193
CsiI ACCWGGT 1 cut(s) 338
Csp6I GTAC 1 cut(s) 792
CspAI ACCGGT 1 cut(s) 193
CviAII CATG 5 cut(s) 26, 71, 202, 464, 503
CviJI RGCY 8 cut(s) 161, 246, 272, 320, 379, 551, 588, 734
CviKI_1 RGCY 8 cut(s) 161, 246, 272, 320, 379, 551, 588, 734
CviQI GTAC 1 cut(s) 792
DpnI GATC 4 cut(s) 315, 480, 495, 683
DpnII GATC 4 cut(s) 313, 478, 493, 681
DraI TTTAAA 1 cut(s) 286
Eam1104I CTCTTC 2 cut(s) 360, 422
EarI CTCTTC 2 cut(s) 360, 422
Eco32I GATATC 1 cut(s) 741
Eco57I CTGAAG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 338
EcoRV GATATC 1 cut(s) 741
EcoT22I ATGCAT 1 cut(s) 72
FaeI CATG 5 cut(s) 29, 74, 205, 467, 506
FatI CATG 5 cut(s) 25, 70, 201, 463, 502
FbaI TGATCA 2 cut(s) 313, 681
FblI GTMKAC 1 cut(s) 701
Fnu4HI GCNGC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 249
GluI GCNGC 1 cut(s) 273
HapII CCGG 1 cut(s) 194
Hin1II CATG 5 cut(s) 29, 74, 205, 467, 506
HinfI GANTC 3 cut(s) 146, 278, 819
HpaII CCGG 1 cut(s) 194
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 1 cut(s) 702
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 1 cut(s) 503
Hpy8I GTNNAC 1 cut(s) 702
HpyAV CCTTC 1 cut(s) 704
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 8 cut(s) 55, 70, 173, 275, 410, 653, 800, 812
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 5 cut(s) 29, 74, 205, 467, 506
Ksp22I TGATCA 2 cut(s) 313, 681
Kzo9I GATC 4 cut(s) 313, 478, 493, 681
LpnPI CCDG 5 cut(s) 120, 207, 325, 352, 648
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 1 cut(s) 809
MabI ACCWGGT 1 cut(s) 338
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 4 cut(s) 21, 259, 637, 708
MalI GATC 4 cut(s) 315, 480, 495, 683
MboI GATC 4 cut(s) 313, 478, 493, 681
MboII GAAGA 7 cut(s) 74, 95, 107, 377, 439, 500, 536
MlyI GAGTC 2 cut(s) 155, 828
MmeI TCCRAC 1 cut(s) 742
MnlI CCTC 3 cut(s) 136, 337, 658
Mph1103I ATGCAT 1 cut(s) 72
MroXI GAANNNNTTC 2 cut(s) 102, 664
MseI TTAA 5 cut(s) 33, 285, 354, 401, 483
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 340
MvaI CCWGG 1 cut(s) 340
MwoI GCNNNNNNNGC 1 cut(s) 608
NdeII GATC 4 cut(s) 313, 478, 493, 681
NlaIII CATG 5 cut(s) 29, 74, 205, 467, 506
NmuCI GTSAC 3 cut(s) 259, 637, 708
NsiI ATGCAT 1 cut(s) 72
NspI RCATGY 2 cut(s) 29, 74
PagI TCATGA 1 cut(s) 502
PdmI GAANNNNTTC 2 cut(s) 102, 664
PfeI GAWTC 1 cut(s) 278
PinAI ACCGGT 1 cut(s) 193
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 2 cut(s) 154, 827
PpsI GAGTC 2 cut(s) 154, 827
Psp6I CCWGG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 338
PstI CTGCAG 3 cut(s) 277, 412, 655
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 1 cut(s) 793
RsaNI GTAC 1 cut(s) 792
SaqAI TTAA 5 cut(s) 33, 285, 354, 401, 483
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 4 cut(s) 313, 478, 493, 681
ScaI AGTACT 1 cut(s) 793
SchI GAGTC 2 cut(s) 155, 828
ScrFI CCNGG 1 cut(s) 340
SexAI ACCWGGT 1 cut(s) 338
SfaNI GCATC 1 cut(s) 809
SfcI CTRYAG 3 cut(s) 273, 408, 651
SsiI CCGC 1 cut(s) 257
SspMI CTAG 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 643
TaiI ACGT 1 cut(s) 103
TaqII GACCGA 1 cut(s) 687
TatI WGTACW 1 cut(s) 791
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 5 cut(s) 33, 285, 354, 401, 483
Tru9I TTAA 5 cut(s) 33, 285, 354, 401, 483
TseFI GTSAC 3 cut(s) 259, 637, 708
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 3 cut(s) 259, 637, 708
TspDTI ATGAA 5 cut(s) 30, 99, 190, 501, 552
XapI RAATTY 3 cut(s) 370, 451, 781
XceI RCATGY 2 cut(s) 29, 74
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 701
XmnI GAANNNNTTC 2 cut(s) 102, 664
XspI CTAG 1 cut(s) 249
ZrmI AGTACT 1 cut(s) 793
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.