Rmu_sc0001921.1_g000031

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001921.1
OG0000215
Physical Location & Seq
Reverse (-)
171779 .. 174552
2774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001921.1_g000031.1.cds

Sequence Viewer

Length: 2274 bp
atggctcctactagaaagtttaagtccggggcgcagaaaagaaaagagaaagagaggagagaagctttacgtaaaactcaagttggttctcttaataagtattttagtagcaacaaagaagaggcatgtcaagctgtgaatgagaatacaagtgaggaaccagagcaggtggtgaatgatcatcatattgaagagtcagagaatgaggaaaataatgaaattctcaatgaagatgttcacaatgcagagccaaatcagtcagagaatgaggaaaataatgaaattctcaatgaagatgttcacaatgcagagccaaatcagtcagagaatgaggaaaataatgaaattctcaatgaagatgttcacaatgcagagccaaatcagtcagagaatgaggaaaataatgaaattctcaatgaagatgttcacaatgcagagccaaatcagtcagagaatgaggaaaataatgaaattctcaatgaagatgttcacaatgcagagccaaatcagtcagagaatgaggaaaataatgaaattctcaatgaagatgttcacaatgcagagccaaatcagtcagagaatgaggaaaataatgaaattctcaatgaagatgttcacaatgcagagccaaatcagtcagagaatgaggaaaataatgaaattctcaatgaagatgttcacaatgcagagccaaatcagtcagagaatgaggaaaataatgaaattctcaatgaagatgttcacaatgcagagccaaatcagtcagagaatgaggaaaataatgaaattctcaatgaagatgttcacaatgcagagccaaatcagtcagagaatgaggaaattaatgacattatcaatgaagatgttcacactacaaattcaactgaggaaattctttttgacatggatgatccagggaattggaacaggacagaccaaaatattacagatttcttggttgaaagaggcctgaaaagagacaagaatgtcatctttccgagagataaatgtgacagatgtttttcctcaaagcattactttagagaattaccaaatggagagaagcaagaaagaaagtggctggtatattcggtttctttggataaagttttttgcttttgttgtaaattgtttgcaaagaaacatcttgtggggcaattagctgatgaaggtgtgaatgattggcacaatatttctgatcgacttaaaagtcatgaaagaagtaggtatcacattggctcaatgacaagttggatggagttggcaaaaaggctgaaattgaagttaacaattgatgcaagtctacaagaacaaatcaatcaagaaaaggaacactggaagcaagtattagagagaattcttgcagttgtgaaaagacttgggaaaaataatttagcttttcgtggagatagtgaaaagctatatgaggagaacaatggcattttcttacagatgatagaactgcttgctgaatttgattcgactatgcaagaacatgttcgacgtcttggactgcttaatgaacttctaactgcattgaagactcttggacttgatgttaatgatataagaggacaggggtatgacaatggatccaacatgaaaggaaaaaacaaagctgagtcttttttcggtgtaattcaacgaatctattccttgttttcagcttctacaaagagatggcaggtttttacagagcatgtgacaggtcttaccgttaagccattatcagaaactcgttgggaaagtcgtgtggagagtgttaaagcaataaggtatcaagctccagaaataagagaagctttgatccacttggtgaatggtaaagaagatgtcaagacaaaaagtgatgctgagactttagcaacatataatcttcagaattttgagttcttgttcggtatgattatatggtatgaattgttacatgctgttaacaatgtcagcaaagttctgcaaactgaagatatgcatgttgatactgccatcaaagaattggaacgtcttctttcctttcttcaaaagtttagagaaactggatttgaggagtccttgattgaagctaaagagattgcaagtgagatggggattgaaccggtattcatggaaaaacggacaattcacaaaaagagacaatttggtgaaagctctagcgaagcggtgacacaatcagctgcagaatcctttaaagtcaactattttctctacatagttgatcaagctatttcttcattcaaaaccaggttagcacaatttcattcaaatttaatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

757

Amino Acids

87.79

Weight (kDa)

4.67

Isoelectric Point (pI)

61.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 157
AasI GACNNNNNNGTC 2 cut(s) 986, 1209
AatII GACGTC 1 cut(s) 1507
Acc36I ACCTGC 2 cut(s) 157, 1675
AccI GTMKAC 1 cut(s) 1303
AciI CCGC 1 cut(s) 2159
AclWI GGATC 4 cut(s) 905, 1587, 1600, 1801
AcuI CTGAAG 2 cut(s) 1862, 1983
AcyI GRCGYC 1 cut(s) 1504
AdeI CACNNNGTG 1 cut(s) 1816
AflIII ACRYGT 1 cut(s) 1495
AgeI ACCGGT 1 cut(s) 2095
AjnI CCWGG 2 cut(s) 913, 2240
Alw26I GTCTC 3 cut(s) 972, 1850, 2125
AlwI GGATC 4 cut(s) 905, 1587, 1600, 1801
AoxI GGCC 1 cut(s) 967
ApeKI GCWGC 1 cut(s) 2174
AseI ATTAAT 1 cut(s) 843
AsiGI ACCGGT 1 cut(s) 2095
AspLEI GCGC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 4 cut(s) 184, 1828, 2153, 2173
BamHI GGATCC 1 cut(s) 1592
BbsI GAAGAC 2 cut(s) 1547, 1997
BbvI GCAGC 1 cut(s) 2161
BccI CCATC 4 cut(s) 1249, 1674, 1994, 2077
BciT130I CCWGG 2 cut(s) 915, 2242
BclI TGATCA 2 cut(s) 178, 2215
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 3 cut(s) 972, 1850, 2125
BfaI CTAG 2 cut(s) 12, 2151
BfmI CTRYAG 1 cut(s) 2175
BfuAI ACCTGC 2 cut(s) 157, 1675
BisI GCNGC 1 cut(s) 2175
BlsI GCNGC 1 cut(s) 2176
Bme1390I CCNGG 3 cut(s) 28, 915, 2242
BmiI GGNNCC 3 cut(s) 6, 159, 1594
BmrFI CCNGG 3 cut(s) 28, 915, 2242
BmsI GCATC 2 cut(s) 1285, 1840
BpiI GAAGAC 2 cut(s) 1547, 1997
BpmI CTGGAG 1 cut(s) 1770
BpuEI CTTGAG 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 28
BsaAI YACGTR 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 1504
BsaJI CCNNGG 2 cut(s) 27, 914
BsaWI WCCGGW 1 cut(s) 2095
Bse118I RCCGGY 1 cut(s) 2095
Bse1I ACTGG 2 cut(s) 1340, 2041
BseBI CCWGG 2 cut(s) 915, 2242
BseDI CCNNGG 2 cut(s) 27, 914
BseGI GGATG 2 cut(s) 913, 1260
BseMII CTCAG 3 cut(s) 876, 1611, 1845
BseNI ACTGG 2 cut(s) 1340, 2041
BseRI GAGGAG 3 cut(s) 70, 1442, 2060
BseXI GCAGC 1 cut(s) 2161
BshFI GGCC 1 cut(s) 969
BshTI ACCGGT 1 cut(s) 2095
BsiSI CCGG 2 cut(s) 27, 2096
BsmAI GTCTC 3 cut(s) 972, 1850, 2125
BsnI GGCC 1 cut(s) 969
Bsp143I GATC 6 cut(s) 178, 910, 1198, 1592, 1806, 2215
BspACI CCGC 1 cut(s) 2159
BspANI GGCC 1 cut(s) 969
BspCNI CTCAG 3 cut(s) 877, 1612, 1846
BspHI TCATGA 1 cut(s) 1213
BspLI GGNNCC 3 cut(s) 6, 159, 1594
BspMAI CTGCAG 1 cut(s) 2179
BspMI ACCTGC 2 cut(s) 157, 1675
BspPI GGATC 4 cut(s) 905, 1587, 1600, 1801
BsrFI RCCGGY 1 cut(s) 2095
BsrI ACTGG 2 cut(s) 1340, 2041
BssAI RCCGGY 1 cut(s) 2095
BssECI CCNNGG 2 cut(s) 27, 914
BssMI GATC 6 cut(s) 178, 910, 1198, 1592, 1806, 2215
BssNI GRCGYC 1 cut(s) 1504
Bst2UI CCWGG 2 cut(s) 915, 2242
Bst4CI ACNGT 1 cut(s) 1717
Bst6I CTCTTC 2 cut(s) 114, 186
BstACI GRCGYC 1 cut(s) 1504
BstBAI YACGTR 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 1467
BstDEI CTNAG 3 cut(s) 885, 1620, 1854
BstF5I GGATG 2 cut(s) 913, 1260
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 6 cut(s) 181, 913, 1201, 1595, 1809, 2218
BstMAI GTCTC 3 cut(s) 972, 1850, 2125
BstMBI GATC 6 cut(s) 178, 910, 1198, 1592, 1806, 2215
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 2 cut(s) 915, 2242
BstNSI RCATGY 5 cut(s) 129, 1499, 1703, 1931, 1976
BstSCI CCNGG 3 cut(s) 26, 913, 2240
BstSFI CTRYAG 1 cut(s) 2175
BstSNI TACGTA 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 2161
BstV2I GAAGAC 2 cut(s) 1547, 1997
BstX2I RGATCY 1 cut(s) 1592
BstXI CCANNNNNNTGG 1 cut(s) 921
BstYI RGATCY 1 cut(s) 1592
BsuRI GGCC 1 cut(s) 969
BtsCI GGATG 2 cut(s) 913, 1260
BtsIMutI CAGTG 1 cut(s) 1333
BveI ACCTGC 2 cut(s) 157, 1675
Cac8I GCNNGC 1 cut(s) 1467
CciI TCATGA 1 cut(s) 1213
CfoI GCGC 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 2095
CsiI ACCWGGT 1 cut(s) 2240
CspAI ACCGGT 1 cut(s) 2095
CviAII CATG 9 cut(s) 126, 904, 1214, 1496, 1600, 1700, 1928, 1973, 2104
DdeI CTNAG 3 cut(s) 885, 1620, 1854
DpnI GATC 6 cut(s) 180, 912, 1200, 1594, 1808, 2217
DpnII GATC 6 cut(s) 178, 910, 1198, 1592, 1806, 2215
DraI TTTAAA 1 cut(s) 2188
DraIII CACNNNGTG 1 cut(s) 1816
DrdI GACNNNNNNGTC 2 cut(s) 986, 1209
DseDI GACNNNNNNGTC 2 cut(s) 986, 1209
Eam1104I CTCTTC 2 cut(s) 114, 186
EarI CTCTTC 2 cut(s) 114, 186
Eco105I TACGTA 1 cut(s) 71
Eco147I AGGCCT 1 cut(s) 969
Eco57I CTGAAG 2 cut(s) 1862, 1983
EcoRI GAATTC 1 cut(s) 1356
EcoRII CCWGG 2 cut(s) 913, 2240
EcoT22I ATGCAT 1 cut(s) 1974
FaeI CATG 9 cut(s) 129, 907, 1217, 1499, 1603, 1703, 1931, 1976, 2107
FalI AAGNNNNNCTT 4 cut(s) 1022, 1054, 1786, 1818
FatI CATG 9 cut(s) 125, 903, 1213, 1495, 1599, 1699, 1927, 1972, 2103
FbaI TGATCA 2 cut(s) 178, 2215
FblI GTMKAC 1 cut(s) 1303
Fnu4HI GCNGC 1 cut(s) 2175
FokI GGATG 2 cut(s) 920, 1267
Fsp4HI GCNGC 1 cut(s) 2175
FspBI CTAG 2 cut(s) 12, 2151
GlaI GCGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 2175
GsuI CTGGAG 1 cut(s) 1770
HaeIII GGCC 1 cut(s) 969
HapII CCGG 2 cut(s) 27, 2096
HhaI GCGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 1504
Hin1II CATG 9 cut(s) 129, 907, 1217, 1499, 1603, 1703, 1931, 1976, 2107
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HincII GTYRAC 3 cut(s) 1287, 1936, 2194
HindII GTYRAC 3 cut(s) 1287, 1936, 2194
HindIII AAGCTT 2 cut(s) 63, 1800
HinfI GANTC 7 cut(s) 194, 1478, 1543, 1622, 1647, 2048, 2180
HpaI GTTAAC 2 cut(s) 1287, 1936
HpaII CCGG 2 cut(s) 27, 2096
HphI GGTGA 4 cut(s) 184, 1828, 2153, 2173
Hpy188III TCNNGA 4 cut(s) 1214, 1322, 1787, 1837
Hpy99I CGWCG 1 cut(s) 1506
HpyAV CCTTC 1 cut(s) 1163
HpyCH4III ACNGT 1 cut(s) 1717
HpyCH4IV ACGT 3 cut(s) 70, 1504, 2002
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 3 cut(s) 885, 1620, 1854
HpySE526I ACGT 3 cut(s) 70, 1504, 2002
Hsp92I GRCGYC 1 cut(s) 1504
Hsp92II CATG 9 cut(s) 129, 907, 1217, 1499, 1603, 1703, 1931, 1976, 2107
HspAI GCGC 1 cut(s) 32
Ksp22I TGATCA 2 cut(s) 178, 2215
KspAI GTTAAC 2 cut(s) 1287, 1936
Kzo9I GATC 6 cut(s) 178, 910, 1198, 1592, 1806, 2215
LmnI GCTCC 2 cut(s) 10, 1789
Lsp1109I GCAGC 1 cut(s) 2161
LweI GCATC 2 cut(s) 1285, 1840
MabI ACCWGGT 1 cut(s) 2240
MaeI CTAG 2 cut(s) 12, 2151
MaeII ACGT 3 cut(s) 70, 1504, 2002
MaeIII GTNAC 4 cut(s) 1010, 1702, 1923, 2161
MalI GATC 6 cut(s) 180, 912, 1200, 1594, 1808, 2217
MboI GATC 6 cut(s) 178, 910, 1198, 1592, 1806, 2215
MfeI CAATTG 1 cut(s) 1290
MflI RGATCY 1 cut(s) 1592
MlyI GAGTC 4 cut(s) 203, 1537, 1631, 2057
MmeI TCCRAC 2 cut(s) 1232, 1620
Mph1103I ATGCAT 1 cut(s) 1974
MspA1I CMGCKG 1 cut(s) 2174
MspI CCGG 2 cut(s) 27, 2096
MspR9I CCNGG 3 cut(s) 28, 915, 2242
MunI CAATTG 1 cut(s) 1290
MvaI CCWGG 2 cut(s) 915, 2242
MwoI GCNNNNNNNGC 1 cut(s) 131
NciI CCSGG 1 cut(s) 28
NdeII GATC 6 cut(s) 178, 910, 1198, 1592, 1806, 2215
NlaIII CATG 9 cut(s) 129, 907, 1217, 1499, 1603, 1703, 1931, 1976, 2107
NlaIV GGNNCC 3 cut(s) 6, 159, 1594
NmuCI GTSAC 3 cut(s) 1010, 1702, 2161
NsiI ATGCAT 1 cut(s) 1974
NspI RCATGY 5 cut(s) 129, 1499, 1703, 1931, 1976
PagI TCATGA 1 cut(s) 1213
PaqCI CACCTGC 1 cut(s) 157
PceI AGGCCT 1 cut(s) 969
PciI ACATGT 1 cut(s) 1495
PfeI GAWTC 3 cut(s) 1478, 1647, 2180
PinAI ACCGGT 1 cut(s) 2095
PkrI GCNGC 1 cut(s) 2176
PleI GAGTC 4 cut(s) 202, 1537, 1630, 2056
PpsI GAGTC 4 cut(s) 202, 1537, 1630, 2056
Ppu21I YACGTR 1 cut(s) 71
PscI ACATGT 1 cut(s) 1495
PshBI ATTAAT 1 cut(s) 843
Psp6I CCWGG 2 cut(s) 913, 2240
PspGI CCWGG 2 cut(s) 913, 2240
PspN4I GGNNCC 3 cut(s) 6, 159, 1594
PstI CTGCAG 1 cut(s) 2179
PsuI RGATCY 1 cut(s) 1592
PvuII CAGCTG 1 cut(s) 2174
SatI GCNGC 1 cut(s) 2175
Sau3AI GATC 6 cut(s) 178, 910, 1198, 1592, 1806, 2215
SchI GAGTC 4 cut(s) 203, 1537, 1631, 2057
ScrFI CCNGG 3 cut(s) 28, 915, 2242
SexAI ACCWGGT 1 cut(s) 2240
SfaNI GCATC 2 cut(s) 1285, 1840
SfcI CTRYAG 1 cut(s) 2175
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
SnaBI TACGTA 1 cut(s) 71
SseBI AGGCCT 1 cut(s) 969
SsiI CCGC 1 cut(s) 2159
SspI AATATT 2 cut(s) 943, 1192
SspMI CTAG 2 cut(s) 12, 2151
StuI AGGCCT 1 cut(s) 969
StyD4I CCNGG 3 cut(s) 26, 913, 2240
TaaI ACNGT 1 cut(s) 1717
TaiI ACGT 3 cut(s) 73, 1507, 2005
TaqI TCGA 3 cut(s) 1201, 1481, 1501
TfiI GAWTC 3 cut(s) 1478, 1647, 2180
TscAI CASTG 1 cut(s) 1340
TseFI GTSAC 3 cut(s) 1010, 1702, 2161
TseI GCWGC 1 cut(s) 2174
Tsp45I GTSAC 3 cut(s) 1010, 1702, 2161
TspGWI ACGGA 1 cut(s) 2128
TspRI CASTG 1 cut(s) 1340
VspI ATTAAT 1 cut(s) 843
XceI RCATGY 5 cut(s) 129, 1499, 1703, 1931, 1976
XcmI CCANNNNNNNNNTGG 2 cut(s) 1817, 1993
XmiI GTMKAC 1 cut(s) 1303
XspI CTAG 2 cut(s) 12, 2151
ZraI GACGTC 1 cut(s) 1505
Zsp2I ATGCAT 1 cut(s) 1974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.