Rw6G025080

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000215
Physical Location & Seq
Reverse (-)
48274833 .. 48277309
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G025080.1

Sequence Viewer

Length: 1035 bp
ATGGCTCCTACTAGAAAATTTCAATCTGGCCATGAGAAACGAGTGAAAAAGAGAAAAGCCGAACAATTTTTGGAATCTCAAAGAGGAGCACTAGATAGATTTATTGTTAAACAACCTCAAAATCAAGGAAGTGCAGATATAGTGAATGAAGAACAAACTGATGTTGTTGAGGAAGTAGATGATATCGATATCAATGTTGAAGAAGATGTAGATGATCTTGGCCATAGTGATAGTGATCACAACGAAATTTTTGATGATGAAGAATTTGATAGTGATGGGTATGAAGATGAGGTTGATACTAATTTAGTGAATGAAGAATCAAGACTTTTTGAAAAGTTGCAAGATGTGTTAAAAAGTCTTGATCTTGATATCGACAACGTAAGAGGGCAAGGATATGACAATGGATCAAATATGAGAGGAAAACACCAAGGTGTACAAAAGAAACTCTTAGAGATAAATCCTAGAGCATTTTACACGCCATCTAATTCTCTGGCAACAAATGAACTTGGGAATTTTGAGTTTTTACTAGGCATGGTCGTTTGGTATGACATTTTGGCCGAAGTTAACATAGTTAGCAAGAAACTACAGTCTGCAAACATGCTTATTGATGTCGCTATGGATTTAGTACAAAAGTTGATTAGCTTTTTTGAAGAATACAGAGAAACAGGCTTTTCACAAGCAATGACTAGAGCTAAAGAAATTGCAGCTAGAATGGAAGTTGATCCTGTCTTTCCTGAAAAAAGACAAATACGTAGAAAAAGACACTTTGATGAGATTGCTAATGAGTCGTCCCGATCAGCTCCTCCTGAATCTGCTGAAGAATCCTTTCGGGTACACTATTTTTTATTCATAATTGATCAAGCTATTGGTTCTTTGAAGAGAAGGTTTGAACAATATCAAGAATATGAGGATATTTTTGGGTTCCTATTTACATCAGATAAAGAGAAGTTTTTCAAAACTAAAACTATTAAAATCTTATTTGAGGTCAACCATGTTGCAGAAGAGATTAAATGGATTAGCTCTGATCTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

344

Amino Acids

39.98

Weight (kDa)

4.71

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 412, 716
AcoI YGGCCR 3 cut(s) 28, 220, 555
AcsI RAATTY 4 cut(s) 17, 246, 263, 511
AcuI CTGAAG 1 cut(s) 837
AfaI GTAC 3 cut(s) 435, 627, 834
AgsI TTSAA 7 cut(s) 23, 200, 332, 650, 877, 890, 955
AleI CACNNNNGTG 1 cut(s) 429
AluBI AGCT 6 cut(s) 642, 692, 707, 800, 863, 1020
AluI AGCT 6 cut(s) 642, 692, 707, 800, 863, 1020
Alw21I GWGCWC 1 cut(s) 91
AlwI GGATC 2 cut(s) 412, 716
AoxI GGCC 3 cut(s) 28, 220, 555
ApeKI GCWGC 1 cut(s) 704
ApoI RAATTY 4 cut(s) 17, 246, 263, 511
Asp700I GAANNNNTTC 2 cut(s) 825, 950
BalI TGGCCA 2 cut(s) 30, 222
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 716
BccI CCATC 2 cut(s) 269, 487
BclI TGATCA 2 cut(s) 235, 856
BfaI CTAG 6 cut(s) 12, 92, 462, 527, 687, 708
BfmI CTRYAG 1 cut(s) 584
BisI GCNGC 1 cut(s) 705
BlsI GCNGC 1 cut(s) 706
BmiI GGNNCC 2 cut(s) 6, 923
Bsa29I ATCGAT 1 cut(s) 186
BsaAI YACGTR 1 cut(s) 752
BsaBI GATNNNNATC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 427
Bse3DI GCAATG 1 cut(s) 687
Bse8I GATNNNNATC 1 cut(s) 234
BseCI ATCGAT 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 427
BseJI GATNNNNATC 1 cut(s) 234
BseMI GCAATG 1 cut(s) 687
BseRI GAGGAG 2 cut(s) 99, 792
BseXI GCAGC 1 cut(s) 716
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 3 cut(s) 30, 222, 557
BshVI ATCGAT 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 91
BslFI GGGAC 1 cut(s) 775
BsmFI GGGAC 1 cut(s) 775
BsnI GGCC 3 cut(s) 30, 222, 557
Bsp1286I GDGCHC 1 cut(s) 91
Bsp1407I TGTACA 1 cut(s) 433
Bsp143I GATC 8 cut(s) 214, 235, 361, 404, 721, 794, 856, 1024
BspANI GGCC 3 cut(s) 30, 222, 557
BspDI ATCGAT 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 6, 923
BspPI GGATC 2 cut(s) 412, 716
BsrDI GCAATG 1 cut(s) 687
BsrGI TGTACA 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 8 cut(s) 214, 235, 361, 404, 721, 794, 856, 1024
BssT1I CCWWGG 1 cut(s) 427
Bst4CI ACNGT 1 cut(s) 588
Bst6I CTCTTC 2 cut(s) 872, 996
BstAUI TGTACA 1 cut(s) 433
BstBAI YACGTR 1 cut(s) 752
BstDEI CTNAG 1 cut(s) 448
BstKTI GATC 8 cut(s) 217, 238, 364, 407, 724, 797, 859, 1027
BstMBI GATC 8 cut(s) 214, 235, 361, 404, 721, 794, 856, 1024
BstNSI RCATGY 1 cut(s) 601
BstSFI CTRYAG 1 cut(s) 584
BstSNI TACGTA 1 cut(s) 752
BstV1I GCAGC 1 cut(s) 716
Bsu15I ATCGAT 1 cut(s) 186
BsuRI GGCC 3 cut(s) 30, 222, 557
BsuTUI ATCGAT 1 cut(s) 186
ClaI ATCGAT 1 cut(s) 186
Csp6I GTAC 3 cut(s) 434, 626, 833
CviAII CATG 4 cut(s) 32, 532, 598, 992
CviQI GTAC 3 cut(s) 434, 626, 833
DdeI CTNAG 1 cut(s) 448
DpnI GATC 8 cut(s) 216, 237, 363, 406, 723, 796, 858, 1026
DpnII GATC 8 cut(s) 214, 235, 361, 404, 721, 794, 856, 1024
EaeI YGGCCR 3 cut(s) 28, 220, 555
Eam1104I CTCTTC 2 cut(s) 872, 996
EarI CTCTTC 2 cut(s) 872, 996
Eco105I TACGTA 1 cut(s) 752
Eco130I CCWWGG 1 cut(s) 427
Eco32I GATATC 3 cut(s) 184, 190, 370
Eco57I CTGAAG 1 cut(s) 837
EcoRV GATATC 3 cut(s) 184, 190, 370
EcoT14I CCWWGG 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 4 cut(s) 35, 535, 601, 995
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FaqI GGGAC 1 cut(s) 775
FatI CATG 4 cut(s) 31, 531, 597, 991
FbaI TGATCA 2 cut(s) 235, 856
Fnu4HI GCNGC 1 cut(s) 705
Fsp4HI GCNGC 1 cut(s) 705
FspBI CTAG 6 cut(s) 12, 92, 462, 527, 687, 708
GluI GCNGC 1 cut(s) 705
HaeIII GGCC 3 cut(s) 30, 222, 557
Hin1II CATG 4 cut(s) 35, 535, 601, 995
HincII GTYRAC 2 cut(s) 565, 988
HindII GTYRAC 2 cut(s) 565, 988
HinfI GANTC 5 cut(s) 74, 317, 785, 809, 821
HpaI GTTAAC 1 cut(s) 565
Hpy166II GTNNAC 4 cut(s) 434, 565, 835, 988
Hpy188I TCNGA 2 cut(s) 937, 1024
Hpy188III TCNNGA 7 cut(s) 321, 359, 365, 734, 792, 806, 899
Hpy8I GTNNAC 4 cut(s) 434, 565, 835, 988
HpyAV CCTTC 1 cut(s) 876
HpyCH4III ACNGT 1 cut(s) 588
HpyCH4IV ACGT 2 cut(s) 378, 751
HpyCH4V TGCA 5 cut(s) 134, 340, 593, 704, 998
HpyF3I CTNAG 1 cut(s) 448
HpySE526I ACGT 2 cut(s) 378, 751
Hsp92II CATG 4 cut(s) 35, 535, 601, 995
Ksp22I TGATCA 2 cut(s) 235, 856
KspAI GTTAAC 1 cut(s) 565
Kzo9I GATC 8 cut(s) 214, 235, 361, 404, 721, 794, 856, 1024
LmnI GCTCC 3 cut(s) 10, 86, 805
LpnPI CCDG 6 cut(s) 12, 476, 651, 738, 747, 819
Lsp1109I GCAGC 1 cut(s) 716
MaeI CTAG 6 cut(s) 12, 92, 462, 527, 687, 708
MaeII ACGT 2 cut(s) 378, 751
MalI GATC 8 cut(s) 216, 237, 363, 406, 723, 796, 858, 1026
MboI GATC 8 cut(s) 214, 235, 361, 404, 721, 794, 856, 1024
MfeI CAATTG 1 cut(s) 1030
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 2 cut(s) 30, 222
MluNI TGGCCA 2 cut(s) 30, 222
MlyI GAGTC 1 cut(s) 794
MnlI CCTC 9 cut(s) 77, 126, 163, 283, 377, 410, 813, 901, 976
Mox20I TGGCCA 2 cut(s) 30, 222
MroXI GAANNNNTTC 2 cut(s) 825, 950
MscI TGGCCA 2 cut(s) 30, 222
MseI TTAA 5 cut(s) 108, 350, 564, 969, 1008
MslI CAYNNNNRTG 2 cut(s) 429, 768
Msp20I TGGCCA 2 cut(s) 30, 222
MunI CAATTG 1 cut(s) 1030
NdeII GATC 8 cut(s) 214, 235, 361, 404, 721, 794, 856, 1024
NlaIII CATG 4 cut(s) 35, 535, 601, 995
NlaIV GGNNCC 2 cut(s) 6, 923
NspI RCATGY 1 cut(s) 601
OliI CACNNNNGTG 1 cut(s) 429
PdmI GAANNNNTTC 2 cut(s) 825, 950
PfeI GAWTC 4 cut(s) 74, 317, 809, 821
PkrI GCNGC 1 cut(s) 706
PleI GAGTC 1 cut(s) 793
PpsI GAGTC 1 cut(s) 793
Ppu21I YACGTR 1 cut(s) 752
PspN4I GGNNCC 2 cut(s) 6, 923
RsaI GTAC 3 cut(s) 435, 627, 834
RsaNI GTAC 3 cut(s) 434, 626, 833
RseI CAYNNNNRTG 2 cut(s) 429, 768
SaqAI TTAA 5 cut(s) 108, 350, 564, 969, 1008
SatI GCNGC 1 cut(s) 705
Sau3AI GATC 8 cut(s) 214, 235, 361, 404, 721, 794, 856, 1024
SchI GAGTC 1 cut(s) 794
SduI GDGCHC 1 cut(s) 91
SfcI CTRYAG 1 cut(s) 584
SmiMI CAYNNNNRTG 2 cut(s) 429, 768
SnaBI TACGTA 1 cut(s) 752
SspMI CTAG 6 cut(s) 12, 92, 462, 527, 687, 708
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 1 cut(s) 588
TaiI ACGT 2 cut(s) 381, 754
TaqI TCGA 2 cut(s) 186, 372
TatI WGTACW 2 cut(s) 433, 625
TfiI GAWTC 4 cut(s) 74, 317, 809, 821
Tru1I TTAA 5 cut(s) 108, 350, 564, 969, 1008
Tru9I TTAA 5 cut(s) 108, 350, 564, 969, 1008
TseI GCWGC 1 cut(s) 704
TspDTI ATGAA 6 cut(s) 162, 273, 297, 327, 516, 838
XapI RAATTY 4 cut(s) 17, 246, 263, 511
XceI RCATGY 1 cut(s) 601
XmnI GAANNNNTTC 2 cut(s) 825, 950
XspI CTAG 6 cut(s) 12, 92, 462, 527, 687, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.