FvH4_6g47642

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000215
Physical Location & Seq
Reverse (-)
36041948 .. 36043368
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47642.t1

Sequence Viewer

Length: 903 bp
ATGATTTTGAAAGTTGGTCTGCACAGGGACTTTGAAGCAGCTCTTCAGTGTTTGAGAGGAAAGAATGCCAACATTGGCAACATATCTCAAGAAGGGGCTAATATCATGCGTTGGGACTATATCATTGTCTCTCATTGGGGTAAACACACAAGTTTTAGAATTGCTCCTACAAGAAAGCATGCAGCTGGTAATTCCAAACGCAAAAGAAAAAAGAAAGGGGACAAGTTTGTTCAAAGTCAATCAGGAGCTATGGAAAAATTTGTTTTCAAGAAAGGGAAGCAACCACAATGTCCAGTGGATGTAGATGTTGATGTAGATGTTGATCTAGAAGAAAATGTAGATGTAGATGTTAATGTTGGTCTAGAAGAAAATGTGGAGCAGCCAATGGAGGAACCTTTGGAAGAAGATGTTGATGTTAATGTAGAAGAAACTATGGAGCCTGGTTTGGAAGGGAATGATGATATTCCCTTAAACATCTTTGATCCTAAAAATTGGGATAATCTTGCTCCTAAATGGAGGGATTTATTGGTGAAAAGAGGTCCTGTAAGAGATTTGTTGACAGGAAAAGGTCCGAGAGATGGATCCAAAAGGTGTTTCTCATCTGAATTTTATACCAAGTACTTATCAAATGGAGAGAAGCATCATCGGGATTGGCTTGTTTATTGTAAGGATCTTGACAGAGTATTCTGCTTCTGTTGTAAAGTGTTCAAGACCAAACGACAACCAACTCAGTTAGCACATGATGGAATAAGGGATTGGGGGCATCTTTCTCATAGTTTGAAGGCACATGAAAAAAGTTCAGACCATATAGATCATATGTTGATTTGGGTTGAGTTACGCATAAGGCTGGAAACTAATCAAGTAATTGACAAAGTTTTGCGATCAAATCAAAAAAGAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

301

Amino Acids

34.68

Weight (kDa)

7.19

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 476, 576, 589, 678
AcsI RAATTY 2 cut(s) 257, 605
AcuI CTGAAG 1 cut(s) 29
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 1 cut(s) 578
AgsI TTSAA 6 cut(s) 10, 35, 233, 268, 709, 781
AjnI CCWGG 1 cut(s) 439
AjuI GAANNNNNNNTTGG 4 cut(s) 578, 610, 739, 771
AluBI AGCT 3 cut(s) 41, 185, 248
AluI AGCT 3 cut(s) 41, 185, 248
Alw26I GTCTC 2 cut(s) 133, 891
AlwI GGATC 4 cut(s) 476, 576, 589, 678
ApeKI GCWGC 3 cut(s) 38, 182, 379
ApoI RAATTY 2 cut(s) 257, 605
AspS9I GGNCC 2 cut(s) 539, 569
AsuHPI GGTGA 1 cut(s) 541
AvaII GGWCC 2 cut(s) 539, 569
BamHI GGATCC 1 cut(s) 581
BbvI GCAGC 3 cut(s) 50, 194, 391
BccI CCATC 2 cut(s) 572, 737
BciT130I CCWGG 1 cut(s) 441
BcoDI GTCTC 2 cut(s) 133, 891
BfaI CTAG 2 cut(s) 326, 362
BisI GCNGC 3 cut(s) 39, 183, 380
BlsI GCNGC 3 cut(s) 40, 184, 381
BmcAI AGTACT 1 cut(s) 620
Bme1390I CCNGG 1 cut(s) 441
Bme18I GGWCC 2 cut(s) 539, 569
BmgT120I GGNCC 2 cut(s) 539, 569
BmiI GGNNCC 3 cut(s) 393, 438, 583
BmrFI CCNGG 1 cut(s) 441
BmsI GCATC 2 cut(s) 649, 772
BpuEI CTTGAG 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 321
Bsc4I CCNNNNNNNGG 1 cut(s) 578
Bse1I ACTGG 1 cut(s) 293
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 1 cut(s) 441
BseGI GGATG 1 cut(s) 304
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 578
BseMII CTCAG 1 cut(s) 743
BseNI ACTGG 1 cut(s) 293
BseXI GCAGC 3 cut(s) 50, 194, 391
BsgI GTGCAG 1 cut(s) 5
BslFI GGGAC 3 cut(s) 41, 128, 233
BslI CCNNNNNNNGG 1 cut(s) 578
BsmAI GTCTC 2 cut(s) 133, 891
BsmFI GGGAC 3 cut(s) 41, 128, 233
BsmI GAATGC 1 cut(s) 70
Bsp143I GATC 6 cut(s) 322, 481, 581, 670, 811, 881
BspCNI CTCAG 1 cut(s) 742
BspLI GGNNCC 3 cut(s) 393, 438, 583
BspPI GGATC 4 cut(s) 476, 576, 589, 678
BspQI GCTCTTC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 293
BssMI GATC 6 cut(s) 322, 481, 581, 670, 811, 881
Bst2UI CCWGG 1 cut(s) 441
Bst6I CTCTTC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 729
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 6 cut(s) 325, 484, 584, 673, 814, 884
BstMAI GTCTC 2 cut(s) 133, 891
BstMBI GATC 6 cut(s) 322, 481, 581, 670, 811, 881
BstNI CCWGG 1 cut(s) 441
BstNSI RCATGY 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 439
BstV1I GCAGC 3 cut(s) 50, 194, 391
BstX2I RGATCY 2 cut(s) 581, 670
BstYI RGATCY 2 cut(s) 581, 670
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 53, 300
Cac8I GCNNGC 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 539, 569
Csp6I GTAC 1 cut(s) 619
CviAII CATG 4 cut(s) 106, 179, 740, 788
CviJI RGCY 8 cut(s) 41, 98, 185, 248, 382, 439, 655, 847
CviKI_1 RGCY 8 cut(s) 41, 98, 185, 248, 382, 439, 655, 847
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 1 cut(s) 729
DpnI GATC 6 cut(s) 324, 483, 583, 672, 813, 883
DpnII GATC 6 cut(s) 322, 481, 581, 670, 811, 881
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 539, 569
Eco57I CTGAAG 1 cut(s) 29
EcoO109I RGGNCCY 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 439
FaeI CATG 4 cut(s) 109, 182, 743, 791
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 3 cut(s) 41, 128, 233
FatI CATG 4 cut(s) 105, 178, 739, 787
FauNDI CATATG 1 cut(s) 816
Fnu4HI GCNGC 3 cut(s) 39, 183, 380
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 3 cut(s) 39, 183, 380
FspBI CTAG 2 cut(s) 326, 362
GluI GCNGC 3 cut(s) 39, 183, 380
Hin1II CATG 4 cut(s) 109, 182, 743, 791
HincII GTYRAC 1 cut(s) 558
HindII GTYRAC 1 cut(s) 558
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 2 cut(s) 143, 558
Hpy188I TCNGA 3 cut(s) 573, 604, 802
Hpy188III TCNNGA 8 cut(s) 89, 243, 268, 326, 362, 647, 674, 709
Hpy8I GTNNAC 2 cut(s) 143, 558
HpyAV CCTTC 3 cut(s) 86, 443, 775
HpyCH4V TGCA 2 cut(s) 22, 182
HpyF3I CTNAG 1 cut(s) 729
Hsp92II CATG 4 cut(s) 109, 182, 743, 791
Kzo9I GATC 6 cut(s) 322, 481, 581, 670, 811, 881
LguI GCTCTTC 1 cut(s) 48
LmnI GCTCC 5 cut(s) 169, 245, 376, 436, 511
LpnPI CCDG 9 cut(s) 10, 171, 228, 306, 426, 453, 546, 555, 833
Lsp1109I GCAGC 3 cut(s) 50, 194, 391
LweI GCATC 2 cut(s) 649, 772
MaeI CTAG 2 cut(s) 326, 362
MaeIII GTNAC 1 cut(s) 834
MalI GATC 6 cut(s) 324, 483, 583, 672, 813, 883
MboI GATC 6 cut(s) 322, 481, 581, 670, 811, 881
MboII GAAGA 6 cut(s) 35, 341, 377, 413, 416, 437
MflI RGATCY 2 cut(s) 581, 670
MluCI AATT 6 cut(s) 159, 190, 257, 490, 605, 864
MnlI CCTC 4 cut(s) 50, 382, 510, 530
MseI TTAA 3 cut(s) 351, 417, 470
MspA1I CMGCKG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 441
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 1 cut(s) 441
NdeI CATATG 1 cut(s) 816
NdeII GATC 6 cut(s) 322, 481, 581, 670, 811, 881
NlaIII CATG 4 cut(s) 109, 182, 743, 791
NlaIV GGNNCC 3 cut(s) 393, 438, 583
NspI RCATGY 1 cut(s) 182
PaeI GCATGC 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 48
PctI GAATGC 1 cut(s) 70
PkrI GCNGC 3 cut(s) 40, 184, 381
PpuMI RGGWCCY 1 cut(s) 539
Psp5II RGGWCCY 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 3 cut(s) 393, 438, 583
PspPI GGNCC 2 cut(s) 539, 569
PspPPI RGGWCCY 1 cut(s) 539
PsuI RGATCY 2 cut(s) 581, 670
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
SapI GCTCTTC 1 cut(s) 48
SaqAI TTAA 3 cut(s) 351, 417, 470
SatI GCNGC 3 cut(s) 39, 183, 380
Sau3AI GATC 6 cut(s) 322, 481, 581, 670, 811, 881
Sau96I GGNCC 2 cut(s) 539, 569
ScaI AGTACT 1 cut(s) 620
ScrFI CCNGG 1 cut(s) 441
SetI ASST 7 cut(s) 43, 187, 250, 397, 541, 571, 593
SfaNI GCATC 2 cut(s) 649, 772
SinI GGWCC 2 cut(s) 539, 569
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SphI GCATGC 1 cut(s) 182
Sse9I AATT 6 cut(s) 159, 190, 257, 490, 605, 864
SspMI CTAG 2 cut(s) 326, 362
StyD4I CCNGG 1 cut(s) 439
TasI AATT 6 cut(s) 159, 190, 257, 490, 605, 864
TatI WGTACW 1 cut(s) 618
Tru1I TTAA 3 cut(s) 351, 417, 470
Tru9I TTAA 3 cut(s) 351, 417, 470
TscAI CASTG 2 cut(s) 53, 300
TseI GCWGC 3 cut(s) 38, 182, 379
TspDTI ATGAA 1 cut(s) 804
TspRI CASTG 2 cut(s) 53, 300
VpaK11BI GGWCC 2 cut(s) 539, 569
XapI RAATTY 2 cut(s) 257, 605
XbaI TCTAGA 2 cut(s) 325, 361
XceI RCATGY 1 cut(s) 182
XspI CTAG 2 cut(s) 326, 362
ZrmI AGTACT 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.