Rh1CG203400

chromatin organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000215
Physical Location & Seq
Forward (+)
44100324 .. 44101598
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG203400.1

Sequence Viewer

Length: 1275 bp
ATGTGTAGTTGGTTTGAGTTAGAAGAGAGACTCTTAAAAAATAAGACGATTGATAGAGCTCTACAACAACAAGTTAACAAAGAAAAAGTTCATTGGAGAAAAGTATTGAAAAGAATTATTGCTGTTGTTAAAGGTCTTTCTAAAAACAATTTGGCATTTAGGGGAACAAATGAGAAGATAGGTGAGGACAACAATGGAATTTTTCTGAGTTTTATTGAGACAATTGGAGAGTTTGATCCAATAATGAAAGAACATCTTCGGCGTATAAAAGATGATGAAATTCATAGTCATTATCTTGGACCTAAAATACAAAATGAATTGATAGATCTCTTAGCTTCTGAAATTAAAACTGAAATCCTAAGAATAGTAAAAGAGGCAAAGTATTTTTCTATCATTCTTGATTGTACTTCTGACATTAGTAAAAGAGAACAAATGACTTTGATTTTGAGATGTGTGAATATATCAAAAACCCCAGCAAAATTAGAAGAATATTTCTTAGAGTTTTTAAGAGTAGATGACACCACTGGAAAAGGACTTTTTGATGAACTTATAAGTGTTATAGCCAAACTAGAACTTGATATTAATGATGCTAGAGGGCAGGGGTATGATAATGGTTCTAACATGAAGGGAAAACATCAAGGTGTCCAGAAAAGGTTGTTAGAAATTAATCCAAGAGCATTCTACACACCATGTGGCTCTCATAATCTGAACCTTGTGCTTTCTGACATGGCTAACTCTTGTCCTAAAGCTAAAACTTTTTTTGGAATTGTACAGAAAATATATGTATTATTTTCTCCTTCAACAAAGAGGTGGAAAATTTTAGAAGATAATGTAAGTGATTTAACTATCAAAGCATTGGCTACAACACGATGGGAAAGTCGGGTAGGAAGTGTCAAGGCTATTAGATATCAAGCTCCACAAATTAGAGCTGCTTTACAACAATTAGCAAATGTAGATGACTTAGATGGTGCACTAAAATGTGAAGCTGAAATGTTAGCAGACTATGCTTTTGCAAACTTTGAATTTTTATTAGGCATGATTATTTGGTATGATATGCTATATGCTGTTGACTTGGTTAGTAAAAAGCTACAATCTAAAGACATGGATATTGGTGATGCTATTAAATTGTTAGAAGGCTTGGTTTCTTTTTTTATAAAGTATAGAGAATATGGATTTACATCTGCTATGATTTCAGCTAGAGAGATTGCACTTGAAATGGAAATAGAACCTATATTCCGTGAGAAACGTAGGACTTGTAGAAAAAAAACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alfin

Protein Analysis

424

Amino Acids

48.74

Weight (kDa)

8.61

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 10 - 214 2.8e-20 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 551, 1154
AclWI GGATC 1 cut(s) 230
AcsI RAATTY 4 cut(s) 198, 279, 816, 1022
AdeI CACNNNGTG 1 cut(s) 692
AfaI GTAC 2 cut(s) 406, 771
AgsI TTSAA 4 cut(s) 109, 801, 1022, 1214
AloI GAACNNNNNNTCC 2 cut(s) 1218, 1250
AluBI AGCT 8 cut(s) 59, 335, 749, 914, 929, 986, 1087, 1196
AluI AGCT 8 cut(s) 59, 335, 749, 914, 929, 986, 1087, 1196
Alw21I GWGCWC 2 cut(s) 61, 973
Alw26I GTCTC 2 cut(s) 22, 212
Alw44I GTGCAC 1 cut(s) 969
AlwI GGATC 1 cut(s) 230
ApaLI GTGCAC 1 cut(s) 969
ApeKI GCWGC 1 cut(s) 929
ApoI RAATTY 4 cut(s) 198, 279, 816, 1022
ArsI GACNNNNNNTTYG 4 cut(s) 427, 459, 992, 1024
AseI ATTAAT 2 cut(s) 582, 666
Asp700I GAANNNNTTC 2 cut(s) 87, 255
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 194, 1124
AvaII GGWCC 1 cut(s) 299
BaeGI GKGCMC 1 cut(s) 973
BanII GRGCYC 1 cut(s) 61
Bbv12I GWGCWC 2 cut(s) 61, 973
BbvI GCAGC 1 cut(s) 916
BccI CCATC 2 cut(s) 864, 959
BcoDI GTCTC 2 cut(s) 22, 212
BfaI CTAG 3 cut(s) 569, 591, 1197
BglII AGATCT 1 cut(s) 325
BisI GCNGC 1 cut(s) 930
BlsI GCNGC 1 cut(s) 931
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmsI GCATC 2 cut(s) 577, 1105
BsaBI GATNNNNATC 1 cut(s) 1177
Bse1I ACTGG 1 cut(s) 529
Bse8I GATNNNNATC 1 cut(s) 1177
BseJI GATNNNNATC 1 cut(s) 1177
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 529
BseSI GKGCMC 1 cut(s) 973
BseXI GCAGC 1 cut(s) 916
BseYI CCCAGC 1 cut(s) 472
BsiHKAI GWGCWC 2 cut(s) 61, 973
BsmAI GTCTC 2 cut(s) 22, 212
BsmI GAATGC 1 cut(s) 677
Bsp1286I GDGCHC 2 cut(s) 61, 973
Bsp1407I TGTACA 1 cut(s) 769
Bsp143I GATC 2 cut(s) 235, 325
BspCNI CTCAG 1 cut(s) 198
BspPI GGATC 1 cut(s) 230
BsrGI TGTACA 1 cut(s) 769
BsrI ACTGG 1 cut(s) 529
BssMI GATC 2 cut(s) 235, 325
Bst4CI ACNGT 1 cut(s) 1270
Bst6I CTCTTC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 1004
BstAUI TGTACA 1 cut(s) 769
BstDEI CTNAG 5 cut(s) 206, 331, 359, 496, 961
BstKTI GATC 2 cut(s) 238, 328
BstMAI GTCTC 2 cut(s) 22, 212
BstMBI GATC 2 cut(s) 235, 325
BstMWI GCNNNNNNNGC 1 cut(s) 1004
BstSLI GKGCMC 1 cut(s) 973
BstV1I GCAGC 1 cut(s) 916
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 522
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 2 cut(s) 405, 770
CviAII CATG 5 cut(s) 622, 690, 727, 1036, 1102
CviQI GTAC 2 cut(s) 405, 770
DdeI CTNAG 5 cut(s) 206, 331, 359, 496, 961
DpnI GATC 2 cut(s) 237, 327
DpnII GATC 2 cut(s) 235, 325
DraIII CACNNNGTG 1 cut(s) 692
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 61
Eco32I GATATC 1 cut(s) 908
Eco47I GGWCC 1 cut(s) 299
Eco53kI GAGCTC 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 59
EcoRV GATATC 1 cut(s) 908
EcoT38I GRGCYC 1 cut(s) 61
FaeI CATG 5 cut(s) 625, 693, 730, 1039, 1105
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FatI CATG 5 cut(s) 621, 689, 726, 1035, 1101
Fnu4HI GCNGC 1 cut(s) 930
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 930
FspBI CTAG 3 cut(s) 569, 591, 1197
GluI GCNGC 1 cut(s) 930
GsaI CCCAGC 1 cut(s) 476
Hin1II CATG 5 cut(s) 625, 693, 730, 1039, 1105
HincII GTYRAC 2 cut(s) 76, 1069
HindII GTYRAC 2 cut(s) 76, 1069
HinfI GANTC 1 cut(s) 30
HpaI GTTAAC 1 cut(s) 76
HphI GGTGA 2 cut(s) 194, 1124
Hpy166II GTNNAC 3 cut(s) 76, 971, 1069
Hpy188I TCNGA 5 cut(s) 207, 340, 412, 708, 724
Hpy188III TCNNGA 2 cut(s) 398, 646
Hpy8I GTNNAC 3 cut(s) 76, 971, 1069
HpyAV CCTTC 3 cut(s) 619, 807, 1127
HpyCH4III ACNGT 1 cut(s) 1270
HpyCH4IV ACGT 1 cut(s) 1246
HpyCH4V TGCA 3 cut(s) 971, 1013, 1208
HpyF10VI GCNNNNNNNGC 1 cut(s) 1004
HpyF3I CTNAG 5 cut(s) 206, 331, 359, 496, 961
HpySE526I ACGT 1 cut(s) 1246
Hsp92II CATG 5 cut(s) 625, 693, 730, 1039, 1105
KspAI GTTAAC 1 cut(s) 76
Kzo9I GATC 2 cut(s) 235, 325
LmnI GCTCC 1 cut(s) 919
LpnPI CCDG 4 cut(s) 486, 510, 584, 659
Lsp1109I GCAGC 1 cut(s) 916
LweI GCATC 2 cut(s) 577, 1105
MaeI CTAG 3 cut(s) 569, 591, 1197
MaeII ACGT 1 cut(s) 1246
MalI GATC 2 cut(s) 237, 327
MboI GATC 2 cut(s) 235, 325
MboII GAAGA 5 cut(s) 35, 187, 248, 497, 836
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 2 cut(s) 61, 973
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 4 cut(s) 178, 367, 587, 801
MroXI GAANNNNTTC 2 cut(s) 87, 255
MseI TTAA 9 cut(s) 35, 75, 129, 345, 506, 582, 666, 842, 1122
MslI CAYNNNNRTG 2 cut(s) 639, 976
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 677
MwoI GCNNNNNNNGC 1 cut(s) 1004
NdeII GATC 2 cut(s) 235, 325
NlaIII CATG 5 cut(s) 625, 693, 730, 1039, 1105
PctI GAATGC 1 cut(s) 677
PdmI GAANNNNTTC 2 cut(s) 87, 255
PkrI GCNGC 1 cut(s) 931
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PshBI ATTAAT 2 cut(s) 582, 666
PsiI TTATAA 2 cut(s) 551, 1154
Psp124BI GAGCTC 1 cut(s) 61
PspFI CCCAGC 1 cut(s) 472
PspPI GGNCC 1 cut(s) 299
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 2 cut(s) 406, 771
RsaNI GTAC 2 cut(s) 405, 770
RseI CAYNNNNRTG 2 cut(s) 639, 976
SacI GAGCTC 1 cut(s) 61
SaqAI TTAA 9 cut(s) 35, 75, 129, 345, 506, 582, 666, 842, 1122
SatI GCNGC 1 cut(s) 930
Sau3AI GATC 2 cut(s) 235, 325
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 1 cut(s) 24
SduI GDGCHC 2 cut(s) 61, 973
SfaNI GCATC 2 cut(s) 577, 1105
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 2 cut(s) 639, 976
SspI AATATT 1 cut(s) 491
SspMI CTAG 3 cut(s) 569, 591, 1197
SstI GAGCTC 1 cut(s) 61
TaaI ACNGT 1 cut(s) 1270
TaiI ACGT 1 cut(s) 1249
TatI WGTACW 2 cut(s) 404, 769
Tru1I TTAA 9 cut(s) 35, 75, 129, 345, 506, 582, 666, 842, 1122
Tru9I TTAA 9 cut(s) 35, 75, 129, 345, 506, 582, 666, 842, 1122
TscAI CASTG 1 cut(s) 529
TseI GCWGC 1 cut(s) 929
TspDTI ATGAA 7 cut(s) 80, 260, 272, 291, 330, 558, 638
TspGWI ACGGA 1 cut(s) 1226
TspRI CASTG 1 cut(s) 529
VneI GTGCAC 1 cut(s) 969
VpaK11BI GGWCC 1 cut(s) 299
VspI ATTAAT 2 cut(s) 582, 666
XapI RAATTY 4 cut(s) 198, 279, 816, 1022
XmnI GAANNNNTTC 2 cut(s) 87, 255
XspI CTAG 3 cut(s) 569, 591, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.