AT3G29794

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000215
Physical Location & Seq
Reverse (-)
14884504 .. 14885709
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G29794.1

Sequence Viewer

Length: 1206 bp
ATGATAGACGATTTTGATCATGTGATGATAGAACATCTTAGAAGATATAGAGAGGGTATATCTCGTTCCCATTATCTCAGCAACAGAATTCAGAATGAGTTAATAGCTTTGTTAGCTAATGAAGTAAAAGCTATGATTGTCAAGAAAATCCAAGCTGCAAAGTACTTCTCTTTGATTCTTGATTGCACTCCAGATATTAGTCATCATGAACAAATGACTGTCATCATTAGGTGTGTAGATGTTTCAACAACTTCAACAAAGGTCAAAGAATTTTTCTTAACGTTCTTGAAAGTTGATGATACATCAGGTGAAGAACTTTTTCGTGAGCTTCAAGATGTTTTGACTGCTTTTGATTTAAAAATTAACAATGTGAGGGGACAAGGTTATGATAATGGCTCTAATATGAAGGGAAAGCATAAGGGAGTACAAAAAAGATTTCTTGAGATAAGTCCTAGGACGTTTTATACACCATGTAGTTGTCACAGTTTGAATCTTGCACTTTGTGATATGGCAACCACTTCTTCAAAGGCTATATCATTTTTGGGGATTATTCATTGTACTTATTGCTTCTTTTCATCTTCAGTTAAGCGATGGAAACTATTTGAGGATCATGTGGGTGGCCTAACTCTTAAGCCTTTATCACAGACTCATTGGGAGAGCCATGTTGAAAGTGTAAAGGCAATACGATTTCAGGCTTCTAAAATCATGAATGCGTTAATGTACATAGCTGAAAATAGTGATGATCCGAAAGAGCAGAGCGACGCTGAATGTCTTGCAACAAGTGAAACACAGGGAATTGGAAGTTTTGAGTTCCTAGTTTCCATGGTTATTTGGTACAATCTTCTATCTGTTGTTAACATCATGACTAAGAGTTTACAGTCAGAAGACATGAACATCGATGTAGCGATTTCTCAACTCAAGGGGTTGGTTTCATATTTTAGAAAATATAGAGAGTCAGGCTTCAAGAAAGCAAAAGTGGAAGCTAAAGAAATTGTAGTTCCTTTGGAGATTGATCCTATATTTGCCAGAAAAGCAAAGCGGGTGATTAAAAGAAAAAGACATTATGGCGAAGAATCAGAAAATATGGAGGGAAGTGTGATATTATCACCCGAGGAGAGCTTTAGGATTGACTACTTTATCCAAATCATGGATCAAGCTCTTTACCCACTTGAGACAAGGTTTGAGCAATTTCAGAGGTATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

401

Amino Acids

46.21

Weight (kDa)

6.65

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 26 - 141 2.2e-15 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1147
AciI CCGC 1 cut(s) 1039
AclI AACGTT 1 cut(s) 281
AclWI GGATC 4 cut(s) 615, 737, 1007, 1158
AcsI RAATTY 2 cut(s) 87, 269
AcuI CTGAAG 1 cut(s) 564
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 5 cut(s) 164, 426, 559, 722, 836
AfiI CCNNNNNNNGG 1 cut(s) 1147
AflII CTTAAG 1 cut(s) 629
AgsI TTSAA 8 cut(s) 246, 255, 289, 332, 490, 525, 668, 964
AluBI AGCT 9 cut(s) 107, 116, 131, 155, 328, 728, 983, 1119, 1157
AluI AGCT 9 cut(s) 107, 116, 131, 155, 328, 728, 983, 1119, 1157
Alw26I GTCTC 1 cut(s) 1166
AlwI GGATC 4 cut(s) 615, 737, 1007, 1158
Ama87I CYCGRG 1 cut(s) 1109
AoxI GGCC 1 cut(s) 619
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 2 cut(s) 87, 269
Asp700I GAANNNNTTC 1 cut(s) 318
AspA2I CCTAGG 1 cut(s) 452
AsuHPI GGTGA 3 cut(s) 320, 1054, 1098
AvaI CYCGRG 1 cut(s) 1109
AvrII CCTAGG 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 891
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 585
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 1166
BfaI CTAG 2 cut(s) 453, 815
BfrI CTTAAG 1 cut(s) 629
BisI GCNGC 1 cut(s) 156
BlnI CCTAGG 1 cut(s) 452
BlsI GCNGC 1 cut(s) 157
BmcAI AGTACT 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 1109
BpiI GAAGAC 1 cut(s) 891
BpmI CTGGAG 1 cut(s) 174
BpuEI CTTGAG 3 cut(s) 461, 902, 1190
Bsa29I ATCGAT 1 cut(s) 897
BsaBI GATNNNNATC 1 cut(s) 15
BsaJI CCNNGG 3 cut(s) 452, 822, 1110
Bsc4I CCNNNNNNNGG 1 cut(s) 1147
Bse8I GATNNNNATC 1 cut(s) 15
BseCI ATCGAT 1 cut(s) 897
BseDI CCNNGG 3 cut(s) 452, 822, 1110
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 1147
BseMII CTCAG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 1127
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 1 cut(s) 621
BshVI ATCGAT 1 cut(s) 897
BsiHKCI CYCGRG 1 cut(s) 1109
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 1 cut(s) 1147
BsmAI GTCTC 1 cut(s) 1166
BsmFI GGGAC 1 cut(s) 390
BsmI GAATGC 1 cut(s) 715
BsnI GGCC 1 cut(s) 621
BsoBI CYCGRG 1 cut(s) 1109
Bsp1407I TGTACA 1 cut(s) 720
Bsp143I GATC 5 cut(s) 16, 607, 742, 1012, 1150
Bsp19I CCATGG 1 cut(s) 822
BspACI CCGC 1 cut(s) 1039
BspANI GGCC 1 cut(s) 621
BspCNI CTCAG 1 cut(s) 90
BspDI ATCGAT 1 cut(s) 897
BspHI TCATGA 3 cut(s) 205, 705, 861
BspPI GGATC 4 cut(s) 615, 737, 1007, 1158
BspTI CTTAAG 1 cut(s) 629
BsrGI TGTACA 1 cut(s) 720
BssECI CCNNGG 3 cut(s) 452, 822, 1110
BssMI GATC 5 cut(s) 16, 607, 742, 1012, 1150
BssT1I CCWWGG 2 cut(s) 452, 822
Bst4CI ACNGT 3 cut(s) 220, 485, 879
BstAFI CTTAAG 1 cut(s) 629
BstAUI TGTACA 1 cut(s) 720
BstDEI CTNAG 3 cut(s) 38, 77, 867
BstDSI CCRYGG 1 cut(s) 822
BstKTI GATC 5 cut(s) 19, 610, 745, 1015, 1153
BstMAI GTCTC 1 cut(s) 1166
BstMBI GATC 5 cut(s) 16, 607, 742, 1012, 1150
BstMWI GCNNNNNNNGC 2 cut(s) 113, 1031
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 891
Bsu15I ATCGAT 1 cut(s) 897
BsuRI GGCC 1 cut(s) 621
BsuTUI ATCGAT 1 cut(s) 897
BtgI CCRYGG 1 cut(s) 822
BtgZI GCGATG 1 cut(s) 604
CciI TCATGA 3 cut(s) 205, 705, 861
ClaI ATCGAT 1 cut(s) 897
CseI GACGC 1 cut(s) 770
Csp6I GTAC 5 cut(s) 163, 425, 558, 721, 835
CviQI GTAC 5 cut(s) 163, 425, 558, 721, 835
DdeI CTNAG 3 cut(s) 38, 77, 867
DpnI GATC 5 cut(s) 18, 609, 744, 1014, 1152
DpnII GATC 5 cut(s) 16, 607, 742, 1012, 1150
DraI TTTAAA 1 cut(s) 357
DraIII CACNNNGTG 1 cut(s) 503
Eco130I CCWWGG 2 cut(s) 452, 822
Eco57I CTGAAG 1 cut(s) 564
Eco88I CYCGRG 1 cut(s) 1109
EcoRI GAATTC 1 cut(s) 87
EcoT14I CCWWGG 2 cut(s) 452, 822
ErhI CCWWGG 2 cut(s) 452, 822
FaqI GGGAC 1 cut(s) 390
FauI CCCGC 1 cut(s) 1032
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 2 cut(s) 453, 815
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 1 cut(s) 621
HgaI GACGC 1 cut(s) 770
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HinfI GANTC 5 cut(s) 175, 490, 646, 953, 1073
HpaI GTTAAC 1 cut(s) 856
HphI GGTGA 3 cut(s) 320, 1054, 1098
Hpy166II GTNNAC 2 cut(s) 856, 875
Hpy188I TCNGA 5 cut(s) 93, 747, 883, 1078, 1194
Hpy8I GTNNAC 2 cut(s) 856, 875
Hpy99I CGWCG 1 cut(s) 764
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 3 cut(s) 220, 485, 879
HpyCH4IV ACGT 2 cut(s) 281, 458
HpyCH4V TGCA 4 cut(s) 158, 186, 497, 776
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 1031
HpyF3I CTNAG 3 cut(s) 38, 77, 867
HpySE526I ACGT 2 cut(s) 281, 458
Ksp22I TGATCA 1 cut(s) 16
KspAI GTTAAC 1 cut(s) 856
Kzo9I GATC 5 cut(s) 16, 607, 742, 1012, 1150
LpnPI CCDG 6 cut(s) 204, 291, 677, 776, 942, 1039
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 2 cut(s) 453, 815
MaeII ACGT 2 cut(s) 281, 458
MaeIII GTNAC 1 cut(s) 479
MalI GATC 5 cut(s) 18, 609, 744, 1014, 1152
MboI GATC 5 cut(s) 16, 607, 742, 1012, 1150
MboII GAAGA 7 cut(s) 54, 323, 513, 570, 833, 896, 1082
MluCI AATT 6 cut(s) 87, 269, 360, 795, 990, 1187
MlyI GAGTC 2 cut(s) 640, 962
MnlI CCTC 6 cut(s) 46, 366, 598, 1081, 1105, 1188
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 9 cut(s) 101, 278, 356, 363, 585, 630, 716, 855, 1047
MslI CAYNNNNRTG 1 cut(s) 615
MspCI CTTAAG 1 cut(s) 629
Mva1269I GAATGC 1 cut(s) 715
MwoI GCNNNNNNNGC 2 cut(s) 113, 1031
NcoI CCATGG 1 cut(s) 822
NdeII GATC 5 cut(s) 16, 607, 742, 1012, 1150
NmuCI GTSAC 1 cut(s) 479
PagI TCATGA 3 cut(s) 205, 705, 861
PctI GAATGC 1 cut(s) 715
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 3 cut(s) 175, 490, 1073
PflMI CCANNNNNTGG 1 cut(s) 1147
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 2 cut(s) 640, 961
PpsI GAGTC 2 cut(s) 640, 961
Psp1406I AACGTT 1 cut(s) 281
PsrI GAACNNNNNNTAC 2 cut(s) 49, 81
RsaI GTAC 5 cut(s) 164, 426, 559, 722, 836
RsaNI GTAC 5 cut(s) 163, 425, 558, 721, 835
RseI CAYNNNNRTG 1 cut(s) 615
SaqAI TTAA 9 cut(s) 101, 278, 356, 363, 585, 630, 716, 855, 1047
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 5 cut(s) 16, 607, 742, 1012, 1150
ScaI AGTACT 1 cut(s) 164
SchI GAGTC 2 cut(s) 640, 962
SmiMI CAYNNNNRTG 1 cut(s) 615
SmlI CTYRAG 4 cut(s) 440, 629, 917, 1169
SmoI CTYRAG 4 cut(s) 440, 629, 917, 1169
Sse9I AATT 6 cut(s) 87, 269, 360, 795, 990, 1187
SsiI CCGC 1 cut(s) 1039
SspMI CTAG 2 cut(s) 453, 815
StyI CCWWGG 2 cut(s) 452, 822
TaaI ACNGT 3 cut(s) 220, 485, 879
TaiI ACGT 2 cut(s) 284, 461
TaqI TCGA 1 cut(s) 897
TasI AATT 6 cut(s) 87, 269, 360, 795, 990, 1187
TatI WGTACW 4 cut(s) 162, 424, 557, 720
TfiI GAWTC 3 cut(s) 175, 490, 1073
Tru1I TTAA 9 cut(s) 101, 278, 356, 363, 585, 630, 716, 855, 1047
Tru9I TTAA 9 cut(s) 101, 278, 356, 363, 585, 630, 716, 855, 1047
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 8 cut(s) 135, 222, 419, 542, 564, 722, 905, 921
Van91I CCANNNNNTGG 1 cut(s) 1147
Vha464I CTTAAG 1 cut(s) 629
XapI RAATTY 2 cut(s) 87, 269
XmaJI CCTAGG 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 2 cut(s) 453, 815
ZrmI AGTACT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.