Rorug07G0226000

Domain of unknown function (DUF4371)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000215
Physical Location & Seq
Forward (+)
20621257 .. 20624459
3203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0226000.1

Sequence Viewer

Length: 690 bp
ATGTATATAGAAGGTTCTCACCCAAAATATAAAGAAGCTCATTTTTGTGCTGCTGTAGGTGGAGCTGGGAGTAGCACAGCAGGTCGAAAAGGCATGGCTGATGCTCTAGCAGATATGAAAAAAGATGGTGCTTCACCTTCTGAAGGCCATCCTACAGTTAACCTAAAGAACAAACCTACTAAAGATGTCCACAAACATCCAGACACATCAAAACCAGCGTGGCTTTTGGCTTTGGAAATATTGGATTGGGGTGAGAACAATATTGCCATTGCTGCTGCAACTACTGCTCCTGGGGCGTTGTTTCAGCAAGTTGTTGTTGTTTGGCATAAGCTTGACCATCCAGATATTTCGAAGTTTGTTGGAGCTTCAATGGGAAGTTCGAATCTTAAAATCATTGCCAAAGGCACATCAAGTGGTGCAACAACAAATCCCGCGGCAAAGCGCGGGGTCATTGCTAGTTCCTTTAGAAATTCTGTCACTGAGGGCAATGCTCTCTACTTTCAAGTGCCTCAAATTAATGGCTCTAATGCACTAGGATTGACTGTGCGGTGCTTGTTCTCCAAGTATAGGCAAGTCGAAAGAGATGAACTTGATGTTATTTTAATCTGTAACCATAAGTTCAATCGGCCGGGAAAAATCGCAGCTGTTTATTCTTCGGAAACACATTCCAAGGTGATGAAAACTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

229

Amino Acids

24.43

Weight (kDa)

9.38

Isoelectric Point (pI)

27.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 71
AccII CGCG 2 cut(s) 434, 444
AciI CCGC 4 cut(s) 432, 434, 444, 547
AcoI YGGCCR 1 cut(s) 626
AcsI RAATTY 1 cut(s) 469
AcuI CTGAAG 1 cut(s) 162
AfiI CCNNNNNNNGG 2 cut(s) 143, 567
AgsI TTSAA 3 cut(s) 369, 503, 622
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 5 cut(s) 38, 65, 331, 365, 644
AluI AGCT 5 cut(s) 38, 65, 331, 365, 644
AoxI GGCC 2 cut(s) 145, 626
ApeKI GCWGC 4 cut(s) 50, 272, 275, 641
ApoI RAATTY 1 cut(s) 469
AseI ATTAAT 1 cut(s) 516
AspLEI GCGC 1 cut(s) 444
AsuC2I CCSGG 1 cut(s) 630
AsuHPI GGTGA 4 cut(s) 11, 126, 263, 685
AsuII TTCGAA 2 cut(s) 350, 380
BbvI GCAGC 4 cut(s) 37, 259, 262, 653
BccI CCATC 3 cut(s) 119, 156, 345
BciT130I CCWGG 1 cut(s) 291
BcnI CCSGG 1 cut(s) 630
BfaI CTAG 3 cut(s) 107, 456, 533
BfmI CTRYAG 2 cut(s) 54, 153
BfuAI ACCTGC 1 cut(s) 71
BisI GCNGC 5 cut(s) 51, 273, 276, 435, 642
BlsI GCNGC 5 cut(s) 52, 274, 277, 436, 643
Bme1390I CCNGG 2 cut(s) 291, 630
BmrFI CCNGG 2 cut(s) 291, 630
BmsI GCATC 1 cut(s) 91
Bpu14I TTCGAA 2 cut(s) 350, 380
BpuMI CCSGG 1 cut(s) 630
BsaJI CCNNGG 3 cut(s) 290, 432, 669
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 567
Bse1I ACTGG 1 cut(s) 688
Bse3DI GCAATG 4 cut(s) 267, 393, 450, 493
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 290, 432, 669
BseGI GGATG 3 cut(s) 148, 196, 337
BseLI CCNNNNNNNGG 2 cut(s) 143, 567
BseMI GCAATG 4 cut(s) 267, 393, 450, 493
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 1 cut(s) 688
BseX3I CGGCCG 1 cut(s) 626
BseXI GCAGC 4 cut(s) 37, 259, 262, 653
BseYI CCCAGC 1 cut(s) 65
Bsh1236I CGCG 2 cut(s) 434, 444
Bsh1285I CGRYCG 1 cut(s) 629
BshFI GGCC 2 cut(s) 147, 628
BsiEI CGRYCG 1 cut(s) 629
BsiSI CCGG 1 cut(s) 629
BslI CCNNNNNNNGG 2 cut(s) 143, 567
BsnI GGCC 2 cut(s) 147, 628
Bsp119I TTCGAA 2 cut(s) 350, 380
BspACI CCGC 4 cut(s) 432, 434, 444, 547
BspANI GGCC 2 cut(s) 147, 628
BspCNI CTCAG 1 cut(s) 472
BspFNI CGCG 2 cut(s) 434, 444
BspMI ACCTGC 1 cut(s) 71
BspT104I TTCGAA 2 cut(s) 350, 380
BsrDI GCAATG 4 cut(s) 267, 393, 450, 493
BsrI ACTGG 1 cut(s) 688
BssECI CCNNGG 3 cut(s) 290, 432, 669
BssT1I CCWWGG 1 cut(s) 669
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 157, 544
BstAPI GCANNNNNTGC 1 cut(s) 284
BstBI TTCGAA 2 cut(s) 350, 380
BstDEI CTNAG 1 cut(s) 480
BstDSI CCRYGG 1 cut(s) 432
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 3 cut(s) 148, 196, 337
BstFNI CGCG 2 cut(s) 434, 444
BstHHI GCGC 1 cut(s) 444
BstMCI CGRYCG 1 cut(s) 629
BstMWI GCNNNNNNNGC 3 cut(s) 272, 284, 293
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 2 cut(s) 289, 628
BstSFI CTRYAG 2 cut(s) 54, 153
BstUI CGCG 2 cut(s) 434, 444
BstV1I GCAGC 4 cut(s) 37, 259, 262, 653
BstZI CGGCCG 1 cut(s) 626
BsuRI GGCC 2 cut(s) 147, 628
BtgI CCRYGG 1 cut(s) 432
BtsCI GGATG 3 cut(s) 148, 196, 337
BtsIMutI CAGTG 1 cut(s) 477
BveI ACCTGC 1 cut(s) 71
CfoI GCGC 1 cut(s) 444
Cfr42I CCGCGG 1 cut(s) 435
CviAII CATG 1 cut(s) 94
DdeI CTNAG 1 cut(s) 480
EaeI YGGCCR 1 cut(s) 626
EagI CGGCCG 1 cut(s) 626
EclXI CGGCCG 1 cut(s) 626
Eco130I CCWWGG 1 cut(s) 669
Eco52I CGGCCG 1 cut(s) 626
Eco57I CTGAAG 1 cut(s) 162
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 1 cut(s) 97
FaiI YATR 8 cut(s) 6, 8, 30, 95, 116, 327, 567, 615
FatI CATG 1 cut(s) 93
FauI CCCGC 2 cut(s) 437, 439
Fnu4HI GCNGC 5 cut(s) 51, 273, 276, 435, 642
FokI GGATG 3 cut(s) 135, 183, 324
Fsp4HI GCNGC 5 cut(s) 51, 273, 276, 435, 642
FspBI CTAG 3 cut(s) 107, 456, 533
GlaI GCGC 1 cut(s) 443
GluI GCNGC 5 cut(s) 51, 273, 276, 435, 642
GsaI CCCAGC 1 cut(s) 69
HaeIII GGCC 2 cut(s) 147, 628
HapII CCGG 1 cut(s) 629
HhaI GCGC 1 cut(s) 444
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 1 cut(s) 442
HinP1I GCGC 1 cut(s) 442
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 1 cut(s) 382
HpaI GTTAAC 1 cut(s) 160
HpaII CCGG 1 cut(s) 629
HphI GGTGA 4 cut(s) 11, 126, 263, 685
Hpy166II GTNNAC 2 cut(s) 160, 190
Hpy188I TCNGA 2 cut(s) 142, 658
Hpy188III TCNNGA 2 cut(s) 200, 341
Hpy8I GTNNAC 2 cut(s) 160, 190
HpyAV CCTTC 3 cut(s) 5, 137, 147
HpyCH4III ACNGT 2 cut(s) 157, 544
HpyCH4V TGCA 3 cut(s) 278, 419, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 284, 293
HpyF3I CTNAG 1 cut(s) 480
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 1 cut(s) 442
KspAI GTTAAC 1 cut(s) 160
KspI CCGCGG 1 cut(s) 435
LmnI GCTCC 3 cut(s) 62, 292, 362
LpnPI CCDG 9 cut(s) 51, 66, 213, 228, 276, 303, 354, 642, 669
Lsp1109I GCAGC 4 cut(s) 37, 259, 262, 653
LweI GCATC 1 cut(s) 91
MaeI CTAG 3 cut(s) 107, 456, 533
MaeIII GTNAC 2 cut(s) 475, 608
MboII GAAGA 1 cut(s) 645
MluCI AATT 2 cut(s) 469, 513
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 2 cut(s) 475, 519
MseI TTAA 4 cut(s) 159, 387, 516, 602
MslI CAYNNNNRTG 1 cut(s) 45
MspA1I CMGCKG 2 cut(s) 434, 644
MspI CCGG 1 cut(s) 629
MspR9I CCNGG 2 cut(s) 291, 630
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 2 cut(s) 434, 444
MwoI GCNNNNNNNGC 3 cut(s) 272, 284, 293
NciI CCSGG 1 cut(s) 630
NlaIII CATG 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 475
NspV TTCGAA 2 cut(s) 350, 380
PfeI GAWTC 1 cut(s) 382
PkrI GCNGC 5 cut(s) 52, 274, 277, 436, 643
PshBI ATTAAT 1 cut(s) 516
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 644
RseI CAYNNNNRTG 1 cut(s) 45
SacII CCGCGG 1 cut(s) 435
SaqAI TTAA 4 cut(s) 159, 387, 516, 602
SatI GCNGC 5 cut(s) 51, 273, 276, 435, 642
ScrFI CCNGG 2 cut(s) 291, 630
SfaNI GCATC 1 cut(s) 91
SfcI CTRYAG 2 cut(s) 54, 153
Sfr303I CCGCGG 1 cut(s) 435
SfuI TTCGAA 2 cut(s) 350, 380
SgrBI CCGCGG 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 2 cut(s) 469, 513
SsiI CCGC 4 cut(s) 432, 434, 444, 547
SspI AATATT 2 cut(s) 240, 262
SspMI CTAG 3 cut(s) 107, 456, 533
StyD4I CCNGG 2 cut(s) 289, 628
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 2 cut(s) 157, 544
TaqI TCGA 4 cut(s) 85, 350, 380, 576
TasI AATT 2 cut(s) 469, 513
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 4 cut(s) 159, 387, 516, 602
Tru9I TTAA 4 cut(s) 159, 387, 516, 602
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 4 cut(s) 50, 272, 275, 641
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 2 cut(s) 131, 600
TspRI CASTG 1 cut(s) 484
VspI ATTAAT 1 cut(s) 516
XagI CCTNNNNNAGG 1 cut(s) 141
XapI RAATTY 1 cut(s) 469
XspI CTAG 3 cut(s) 107, 456, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.