Rmu_sc0000475.1_g000004

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000475.1
OG0000215
Physical Location & Seq
Reverse (-)
15292 .. 16852
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000475.1_g000004.1.cds

Sequence Viewer

Length: 726 bp
atgcctcttgatgttgccgtgaagaacttagagggactagtttcttattttgaaaagtataggcaaaatgggtttaattttgccatgactggagctaaagaaattgcaaatgacatgggagttgagcctatatttcctataaaacgtcatgtttgcagaaaaaagcattttgatgaaattccaaatactgaaagggaacaacaatctgctcaagagtcctttagaactgattacgttttggttttagttgatatggctctttctcaattaaaaagcaggtttgaacaaatgaaaacttttgaatctatatttggcttcttgtttgatgcatcaaagttagcttatttggatgatgatgacttgagaagttgttgtttgaatcttgaaactgctttgagaaatggtgatggttctgacattgatgggaaatatttgcttatggagttacaaattttgcaggagatgttgccgaatgaggcatatgaaacagataggccttggacatccattcaaattatggtgtttgcaaagaaaatggatatgtttccaagtgttatggttgcctataggattttattaactataccgttttggggtcgaatgggttttggtgctgtcgagtttaggtttcgggggggggcaaaaaaagaagaagaaggagtaggaggaaaccgcatagtcgcccagaacgcccagagcgcccaggcggatgaccaggctgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

241

Amino Acids

27.48

Weight (kDa)

4.98

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 267
AciI CCGC 2 cut(s) 673, 707
AcsI RAATTY 2 cut(s) 177, 450
AfiI CCNNNNNNNGG 1 cut(s) 593
AgsI TTSAA 6 cut(s) 53, 284, 302, 379, 386, 512
AhlI ACTAGT 1 cut(s) 37
AjnI CCWGG 2 cut(s) 702, 714
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 2 cut(s) 95, 341
AluI AGCT 2 cut(s) 95, 341
AoxI GGCC 1 cut(s) 494
ApeKI GCWGC 1 cut(s) 719
ApoI RAATTY 2 cut(s) 177, 450
AspLEI GCGC 1 cut(s) 701
AsuHPI GGTGA 1 cut(s) 416
BbvI GCAGC 1 cut(s) 706
BccI CCATC 2 cut(s) 401, 416
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 2 cut(s) 704, 716
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 2 cut(s) 38, 724
BfmI CTRYAG 1 cut(s) 565
BfoI RGCGCY 1 cut(s) 702
BfuAI ACCTGC 1 cut(s) 267
BisI GCNGC 1 cut(s) 720
BlsI GCNGC 1 cut(s) 721
Bme1390I CCNGG 2 cut(s) 704, 716
BmrFI CCNGG 2 cut(s) 704, 716
BmsI GCATC 2 cut(s) 316, 338
BpmI CTGGAG 1 cut(s) 111
BpuEI CTTGAG 2 cut(s) 195, 382
BsaJI CCNNGG 2 cut(s) 497, 702
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse1I ACTGG 1 cut(s) 94
BseBI CCWGG 2 cut(s) 704, 716
BseDI CCNNGG 2 cut(s) 497, 702
BseGI GGATG 3 cut(s) 355, 503, 715
BseLI CCNNNNNNNGG 1 cut(s) 593
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 706
BshFI GGCC 1 cut(s) 496
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 593
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 1 cut(s) 496
BspACI CCGC 2 cut(s) 673, 707
BspANI GGCC 1 cut(s) 496
BspMI ACCTGC 1 cut(s) 267
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 497, 702
BssT1I CCWWGG 1 cut(s) 497
Bst2UI CCWGG 2 cut(s) 704, 716
Bst4CI ACNGT 1 cut(s) 588
BstDEI CTNAG 1 cut(s) 28
BstF5I GGATG 3 cut(s) 355, 503, 715
BstH2I RGCGCY 1 cut(s) 702
BstHHI GCGC 1 cut(s) 701
BstMWI GCNNNNNNNGC 2 cut(s) 689, 698
BstNI CCWGG 2 cut(s) 704, 716
BstSCI CCNGG 2 cut(s) 702, 714
BstSFI CTRYAG 1 cut(s) 565
BstV1I GCAGC 1 cut(s) 706
BsuRI GGCC 1 cut(s) 496
BtsCI GGATG 3 cut(s) 355, 503, 715
BveI ACCTGC 1 cut(s) 267
CfoI GCGC 1 cut(s) 701
CviAII CATG 3 cut(s) 85, 115, 149
CviJI RGCY 7 cut(s) 95, 127, 257, 315, 341, 496, 719
CviKI_1 RGCY 7 cut(s) 95, 127, 257, 315, 341, 496, 719
DdeI CTNAG 1 cut(s) 28
EciI GGCGGA 1 cut(s) 722
Eco130I CCWWGG 1 cut(s) 497
Eco147I AGGCCT 1 cut(s) 496
EcoRII CCWGG 2 cut(s) 702, 714
EcoT14I CCWWGG 1 cut(s) 497
EcoT22I ATGCAT 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 3 cut(s) 88, 118, 152
FaqI GGGAC 1 cut(s) 48
FatI CATG 3 cut(s) 84, 114, 148
FauNDI CATATG 1 cut(s) 481
Fnu4HI GCNGC 1 cut(s) 720
FokI GGATG 3 cut(s) 362, 490, 722
Fsp4HI GCNGC 1 cut(s) 720
FspBI CTAG 2 cut(s) 38, 724
GlaI GCGC 1 cut(s) 700
GluI GCNGC 1 cut(s) 720
GsuI CTGGAG 1 cut(s) 111
HaeII RGCGCY 1 cut(s) 702
HaeIII GGCC 1 cut(s) 496
HhaI GCGC 1 cut(s) 701
Hin1II CATG 3 cut(s) 88, 118, 152
Hin6I GCGC 1 cut(s) 699
HinP1I GCGC 1 cut(s) 699
HinfI GANTC 3 cut(s) 215, 302, 379
HphI GGTGA 1 cut(s) 416
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 3 cut(s) 8, 212, 383
HpyAV CCTTC 1 cut(s) 650
HpyCH4III ACNGT 1 cut(s) 588
HpyCH4IV ACGT 2 cut(s) 145, 234
HpyCH4V TGCA 5 cut(s) 107, 156, 329, 457, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 689, 698
HpyF3I CTNAG 1 cut(s) 28
HpySE526I ACGT 2 cut(s) 145, 234
Hsp92II CATG 3 cut(s) 88, 118, 152
HspAI GCGC 1 cut(s) 699
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 8 cut(s) 75, 262, 443, 689, 698, 701, 707, 716
Lsp1109I GCAGC 1 cut(s) 706
LweI GCATC 2 cut(s) 316, 338
MaeI CTAG 2 cut(s) 38, 724
MaeII ACGT 2 cut(s) 145, 234
MaeIII GTNAC 1 cut(s) 444
MboII GAAGA 3 cut(s) 34, 662, 665
MluCI AATT 6 cut(s) 76, 102, 177, 266, 450, 513
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 4 cut(s) 15, 25, 469, 659
Mph1103I ATGCAT 1 cut(s) 331
MseI TTAA 3 cut(s) 75, 269, 578
MslI CAYNNNNRTG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 704, 716
MvaI CCWGG 2 cut(s) 704, 716
MwoI GCNNNNNNNGC 2 cut(s) 689, 698
NdeI CATATG 1 cut(s) 481
NlaIII CATG 3 cut(s) 88, 118, 152
NsiI ATGCAT 1 cut(s) 331
PceI AGGCCT 1 cut(s) 496
PfeI GAWTC 2 cut(s) 302, 379
PkrI GCNGC 1 cut(s) 721
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 702, 714
PspGI CCWGG 2 cut(s) 702, 714
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 3 cut(s) 75, 269, 578
SatI GCNGC 1 cut(s) 720
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 704, 716
SetI ASST 6 cut(s) 97, 148, 237, 281, 343, 629
SfaNI GCATC 2 cut(s) 316, 338
SfcI CTRYAG 1 cut(s) 565
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 2 cut(s) 210, 361
SmoI CTYRAG 2 cut(s) 210, 361
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 6 cut(s) 76, 102, 177, 266, 450, 513
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 2 cut(s) 673, 707
SspI AATATT 1 cut(s) 431
SspMI CTAG 2 cut(s) 38, 724
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 2 cut(s) 702, 714
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 1 cut(s) 588
TaiI ACGT 2 cut(s) 148, 237
TaqI TCGA 2 cut(s) 598, 618
TasI AATT 6 cut(s) 76, 102, 177, 266, 450, 513
TfiI GAWTC 2 cut(s) 302, 379
Tru1I TTAA 3 cut(s) 75, 269, 578
Tru9I TTAA 3 cut(s) 75, 269, 578
TseI GCWGC 1 cut(s) 719
TspDTI ATGAA 3 cut(s) 189, 305, 498
XapI RAATTY 2 cut(s) 177, 450
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
XspI CTAG 2 cut(s) 38, 724
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.