Rw5G034080

Domain of unknown function (DUF4371)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000215
Physical Location & Seq
Forward (+)
58430138 .. 58444658
14521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G034080.1

Sequence Viewer

Length: 1242 bp
ATGTCATTGATACTTAGATGTGTGAATGCTTCAAAGAGTCCAATACAAATTGAAGAGTTCTTTGCGGAGTTTTTAAATGTACATGACACTTCTGGTCAGGGACTATCACTACTACACAAAACACATATCTGGACACCTCGGTTTTTTTTGAAGGACCTGCAGGCTGTGGTACAATCATTGGATCTTGATATTAACAATGTGAGGGGACAAGGATATGACAATGGGTCAAATATGAAAGGCAAACACCAAGGGGTGCAAAAAAAATTGTTAGATATCAATCCTAGGGCATTATACACTCCGTGTGGTTGTCATTGTTTAAACTTAACTCTTTGTGATGTGGCAAATTCTTGTGGGAAAGCAGTGGATTTTTTTGGAATATTACAACGTCTTTATACCTTGTTTGCAGACAACCTAAAAGGATTCACTCTCAAATCATTATCCACTACGCGTTGGGAGAGTCGTATTGAAAGTGTTAAGCCTCTACGATTCAACGCCGTTGAAATAAGAGAAGCATTAGTTCAATTGGCAGAAATTGACAAGGATCCCAAAATTAAAAGTGGTGCAAAGTCAATAGCAACTAATGATCTGGGAGACTTTGAGTTTTTGCTAAGCATGGTGATTTGGTATGAAATTTTGTTTGCTTTTAATAGGGTTAGCAAAGTGCTGCAGTCTCATGATATGGAAATTAGTGTTGCTATAGCTGAAGTAAAAGGTCTAATTGCTTGGCTTGATAAGTTTAGAGAAACTGGCTTCACAGATGCAATAATTACTGCTAAAGAAATTGCTGCTTCATTAGATGTTGATCCTGTTTTTCCGGAAAAGCGTCAAATTCAAAGAAAAAGATTTTTTGATGAAAGCGGCAGTGAGTTTGAACAATACCAACGTTATAATGATATCTTTGGATTTTTATTCACTTCTGAAACTTTGAATTCCTTGAATGATAATGATTTGAAAGCTGCTTGTATTCATCTTGAGACTGTTTTGAGATATGGAGAGAGTTCAGATGTTGATGGGGAAGACATGGTTAGAGAGCTAAAACTCTTAAGGGAGATATTATCCAAACAGAAGATGACAGCTAGTGATATATTGAATTTCTTACAGGAAAGGAATACCTGCCCAGTTGTTAGACTTGCATATCGAATATTGTTAACTGAGTTTTTCCAAGTTAAAGTTATTGAAGTCTTATTTGCGATCAACTATGTCACAAGAAAGGCTAAATGGACTTGCTTTGATTTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

413

Amino Acids

47.22

Weight (kDa)

5.91

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 888
Acc36I ACCTGC 2 cut(s) 165, 1121
AccII CGCG 1 cut(s) 448
AccIII TCCGGA 1 cut(s) 814
AciI CCGC 2 cut(s) 65, 858
AclI AACGTT 1 cut(s) 883
AclWI GGATC 4 cut(s) 189, 536, 549, 797
AcsI RAATTY 5 cut(s) 343, 630, 828, 928, 1090
AcuI CTGAAG 1 cut(s) 723
AdeI CACNNNGTG 1 cut(s) 300
AfaI GTAC 2 cut(s) 81, 171
AflII CTTAAG 1 cut(s) 1042
AflIII ACRYGT 1 cut(s) 446
AhdI GACNNNNNGTC 1 cut(s) 223
AluBI AGCT 4 cut(s) 701, 956, 1033, 1076
AluI AGCT 4 cut(s) 701, 956, 1033, 1076
Alw26I GTCTC 3 cut(s) 585, 675, 968
AlwI GGATC 4 cut(s) 189, 536, 549, 797
Aor13HI TCCGGA 1 cut(s) 814
ApeKI GCWGC 3 cut(s) 664, 785, 956
ApoI RAATTY 5 cut(s) 343, 630, 828, 928, 1090
AspA2I CCTAGG 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 628
AvaII GGWCC 1 cut(s) 154
AvrII CCTAGG 1 cut(s) 281
BamHI GGATCC 1 cut(s) 541
BbsI GAAGAC 1 cut(s) 1023
BbvI GCAGC 3 cut(s) 651, 772, 943
BccI CCATC 1 cut(s) 1004
BceAI ACGGC 1 cut(s) 479
BcoDI GTCTC 3 cut(s) 585, 675, 968
BfaI CTAG 2 cut(s) 282, 1077
BfmI CTRYAG 3 cut(s) 158, 665, 696
BfrI CTTAAG 1 cut(s) 1042
BfuAI ACCTGC 2 cut(s) 165, 1121
BisI GCNGC 4 cut(s) 665, 786, 859, 957
BlnI CCTAGG 1 cut(s) 281
BlpI GCTNAGC 1 cut(s) 608
BlsI GCNGC 4 cut(s) 666, 787, 860, 958
Bme18I GGWCC 1 cut(s) 154
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 543
BmrI ACTGGG 1 cut(s) 1112
BmsI GCATC 1 cut(s) 748
BmuI ACTGGG 1 cut(s) 1112
BpiI GAAGAC 1 cut(s) 1023
Bpu1102I GCTNAGC 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 992
BsaBI GATNNNNATC 2 cut(s) 276, 801
BsaJI CCNNGG 3 cut(s) 137, 247, 281
BsaWI WCCGGW 1 cut(s) 814
Bse1I ACTGG 2 cut(s) 751, 1118
Bse8I GATNNNNATC 2 cut(s) 276, 801
BseAI TCCGGA 1 cut(s) 814
BseDI CCNNGG 3 cut(s) 137, 247, 281
BseJI GATNNNNATC 2 cut(s) 276, 801
BseMII CTCAG 1 cut(s) 1143
BseNI ACTGG 2 cut(s) 751, 1118
BseXI GCAGC 3 cut(s) 651, 772, 943
Bsh1236I CGCG 1 cut(s) 448
BsiSI CCGG 1 cut(s) 815
BslFI GGGAC 2 cut(s) 114, 219
BsmAI GTCTC 3 cut(s) 585, 675, 968
BsmFI GGGAC 2 cut(s) 114, 219
BsmI GAATGC 1 cut(s) 31
Bsp13I TCCGGA 1 cut(s) 814
Bsp1407I TGTACA 1 cut(s) 79
Bsp143I GATC 5 cut(s) 181, 541, 583, 802, 1191
Bsp1720I GCTNAGC 1 cut(s) 608
BspACI CCGC 2 cut(s) 65, 858
BspCNI CTCAG 1 cut(s) 1144
BspEI TCCGGA 1 cut(s) 814
BspFNI CGCG 1 cut(s) 448
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 1 cut(s) 543
BspMAI CTGCAG 2 cut(s) 162, 669
BspMI ACCTGC 2 cut(s) 165, 1121
BspPI GGATC 4 cut(s) 189, 536, 549, 797
BspTI CTTAAG 1 cut(s) 1042
BsrGI TGTACA 1 cut(s) 79
BsrI ACTGG 2 cut(s) 751, 1118
BssECI CCNNGG 3 cut(s) 137, 247, 281
BssMI GATC 5 cut(s) 181, 541, 583, 802, 1191
BssT1I CCWWGG 2 cut(s) 247, 281
Bst4CI ACNGT 1 cut(s) 979
Bst6I CTCTTC 1 cut(s) 48
BstAFI CTTAAG 1 cut(s) 1042
BstAUI TGTACA 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 3 cut(s) 14, 608, 1152
BstFNI CGCG 1 cut(s) 448
BstKTI GATC 5 cut(s) 184, 544, 586, 805, 1194
BstMAI GTCTC 3 cut(s) 585, 675, 968
BstMBI GATC 5 cut(s) 181, 541, 583, 802, 1191
BstSFI CTRYAG 3 cut(s) 158, 665, 696
BstUI CGCG 1 cut(s) 448
BstV1I GCAGC 3 cut(s) 651, 772, 943
BstV2I GAAGAC 1 cut(s) 1023
BstX2I RGATCY 2 cut(s) 181, 541
BstYI RGATCY 2 cut(s) 181, 541
BtsI GCAGTG 2 cut(s) 366, 868
BtsIMutI CAGTG 2 cut(s) 366, 868
BveI ACCTGC 2 cut(s) 165, 1121
Cac8I GCNNGC 1 cut(s) 162
CciI TCATGA 1 cut(s) 673
Cfr13I GGNCC 1 cut(s) 154
CseI GACGC 1 cut(s) 812
Csp6I GTAC 2 cut(s) 80, 170
CviAII CATG 4 cut(s) 83, 613, 674, 1021
CviJI RGCY 9 cut(s) 164, 478, 701, 727, 750, 956, 1033, 1076, 1214
CviKI_1 RGCY 9 cut(s) 164, 478, 701, 727, 750, 956, 1033, 1076, 1214
CviQI GTAC 2 cut(s) 80, 170
DdeI CTNAG 3 cut(s) 14, 608, 1152
DpnI GATC 5 cut(s) 183, 543, 585, 804, 1193
DpnII GATC 5 cut(s) 181, 541, 583, 802, 1191
DraI TTTAAA 2 cut(s) 75, 318
DraIII CACNNNGTG 1 cut(s) 300
DriI GACNNNNNGTC 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 48
Eam1105I GACNNNNNGTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 48
Eco130I CCWWGG 2 cut(s) 247, 281
Eco32I GATATC 2 cut(s) 274, 895
Eco47I GGWCC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 723
EcoO109I RGGNCCY 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 928
EcoRV GATATC 2 cut(s) 274, 895
EcoT14I CCWWGG 2 cut(s) 247, 281
ErhI CCWWGG 2 cut(s) 247, 281
FaeI CATG 4 cut(s) 86, 616, 677, 1024
FaqI GGGAC 2 cut(s) 114, 219
FatI CATG 4 cut(s) 82, 612, 673, 1020
Fnu4HI GCNGC 4 cut(s) 665, 786, 859, 957
Fsp4HI GCNGC 4 cut(s) 665, 786, 859, 957
FspBI CTAG 2 cut(s) 282, 1077
GluI GCNGC 4 cut(s) 665, 786, 859, 957
HapII CCGG 1 cut(s) 815
HgaI GACGC 1 cut(s) 812
Hin1II CATG 4 cut(s) 86, 616, 677, 1024
HincII GTYRAC 1 cut(s) 1149
HindII GTYRAC 1 cut(s) 1149
HinfI GANTC 4 cut(s) 37, 420, 457, 486
HpaI GTTAAC 1 cut(s) 1149
HpaII CCGG 1 cut(s) 815
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 1 cut(s) 1149
Hpy188I TCNGA 2 cut(s) 919, 1003
Hpy188III TCNNGA 5 cut(s) 130, 185, 674, 815, 971
Hpy8I GTNNAC 1 cut(s) 1149
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 979
HpyCH4IV ACGT 2 cut(s) 385, 883
HpyCH4V TGCA 7 cut(s) 160, 256, 404, 563, 667, 761, 1133
HpyF3I CTNAG 3 cut(s) 14, 608, 1152
HpySE526I ACGT 2 cut(s) 385, 883
Hsp92II CATG 4 cut(s) 86, 616, 677, 1024
Kpn2I TCCGGA 1 cut(s) 814
KspAI GTTAAC 1 cut(s) 1149
Kzo9I GATC 5 cut(s) 181, 541, 583, 802, 1191
Lsp1109I GCAGC 3 cut(s) 651, 772, 943
LweI GCATC 1 cut(s) 748
MaeI CTAG 2 cut(s) 282, 1077
MaeII ACGT 2 cut(s) 385, 883
MaeIII GTNAC 1 cut(s) 1201
MalI GATC 5 cut(s) 183, 543, 585, 804, 1193
MboI GATC 5 cut(s) 181, 541, 583, 802, 1191
MboII GAAGA 3 cut(s) 65, 1028, 1078
MfeI CAATTG 1 cut(s) 521
MflI RGATCY 2 cut(s) 181, 541
MluI ACGCGT 1 cut(s) 446
MlyI GAGTC 2 cut(s) 46, 466
MnlI CCTC 3 cut(s) 147, 195, 489
MroI TCCGGA 1 cut(s) 814
MspCI CTTAAG 1 cut(s) 1042
MspI CCGG 1 cut(s) 815
MssI GTTTAAAC 1 cut(s) 318
MunI CAATTG 1 cut(s) 521
Mva1269I GAATGC 1 cut(s) 31
MvnI CGCG 1 cut(s) 448
NdeII GATC 5 cut(s) 181, 541, 583, 802, 1191
NlaIII CATG 4 cut(s) 86, 616, 677, 1024
NlaIV GGNNCC 1 cut(s) 543
NmuCI GTSAC 1 cut(s) 1201
PagI TCATGA 1 cut(s) 673
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 2 cut(s) 420, 486
PkrI GCNGC 4 cut(s) 666, 787, 860, 958
PleI GAGTC 2 cut(s) 45, 465
PmeI GTTTAAAC 1 cut(s) 318
PpsI GAGTC 2 cut(s) 45, 465
PpuMI RGGWCCY 1 cut(s) 154
PsiI TTATAA 1 cut(s) 888
Psp1406I AACGTT 1 cut(s) 883
Psp5II RGGWCCY 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 543
PspPI GGNCC 1 cut(s) 154
PspPPI RGGWCCY 1 cut(s) 154
PstI CTGCAG 2 cut(s) 162, 669
PsuI RGATCY 2 cut(s) 181, 541
RsaI GTAC 2 cut(s) 81, 171
RsaNI GTAC 2 cut(s) 80, 170
SatI GCNGC 4 cut(s) 665, 786, 859, 957
Sau3AI GATC 5 cut(s) 181, 541, 583, 802, 1191
Sau96I GGNCC 1 cut(s) 154
SbfI CCTGCAGG 1 cut(s) 162
SchI GAGTC 2 cut(s) 46, 466
SdaI CCTGCAGG 1 cut(s) 162
SfaNI GCATC 1 cut(s) 748
SfcI CTRYAG 3 cut(s) 158, 665, 696
SinI GGWCC 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 971, 1042
SmoI CTYRAG 2 cut(s) 971, 1042
Sse8387I CCTGCAGG 1 cut(s) 162
SsiI CCGC 2 cut(s) 65, 858
SspI AATATT 2 cut(s) 378, 1143
SspMI CTAG 2 cut(s) 282, 1077
StyI CCWWGG 2 cut(s) 247, 281
TaaI ACNGT 1 cut(s) 979
TaiI ACGT 2 cut(s) 388, 886
TaqI TCGA 2 cut(s) 1138, 1236
TatI WGTACW 1 cut(s) 79
TauI GCSGC 1 cut(s) 861
TfiI GAWTC 2 cut(s) 420, 486
TscAI CASTG 2 cut(s) 366, 868
TseFI GTSAC 1 cut(s) 1201
TseI GCWGC 3 cut(s) 664, 785, 956
Tsp45I GTSAC 1 cut(s) 1201
TspDTI ATGAA 5 cut(s) 248, 642, 780, 867, 956
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 2 cut(s) 366, 868
Vha464I CTTAAG 1 cut(s) 1042
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 5 cut(s) 343, 630, 828, 928, 1090
XmaJI CCTAGG 1 cut(s) 281
XspI CTAG 2 cut(s) 282, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.