FvH4_2g32571

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000215
Physical Location & Seq
Forward (+)
24660353 .. 24663028
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32571.t1

Sequence Viewer

Length: 1653 bp
ATGGCTCCAATTAGGAAGTATCCTTCAGGGGCTAAAAAAAGAAAACAGAAGAAAAAGAGAGATGCATTGGCTAAAGTTCAATCTGGATCTATCAATAAGTACTTCAAGCCAAATAAGGAACAAGAACAGACAGGTACTGATGAGGATGTGCATGAGAATGAGAATGAGAACGAGAATGCAGATGTTATTGGTAATGGGGAAGAACCAAATCTCAGAGTGAATGAGGAAGAAAGAATTATTGCTGAAGATGATCAACAAGATGCATGTAATAGTGGTAGTATAGAAGAACCATATCTCATAATGAATGAGGAAGAAATAATTATTCCTGAAGATGATCAACAAGATGCAGATGATAGTGGTAGTATGGAAGAACGAGATCTCACAGTGAATGAGGAAGAAATAATTGTTGCCGAAGATGATCAACAAGATTCAACTTCAGCATGTGATTTACCATTCGATGTTGATGATCCAGGAAATTGGGAGAAGATAAAACAAAATGTTCGAGATTTTTTAGTCCAAAGAGGTCCTAAAAGAGAGATTGATTTGAGCTTTCCAGAAGATGCCATGGGGAGACAATTCAGTTCCAAACATTATTTTCGTGTCTTATCTAATGGTGAAAAGAAGAACAGAAGGTGGTTAGTGTACTCAATTTCTTCGGACAAGATATTCTGTTTTTGTTGTAAATTGTTCAAGCAAAATCACAACAAGACTTTGTTGGGTCAATTTGCTAATGAAGGATTGAATGATTGGAAAAATCTTAAAAATGCACTCGATACTGATGCACTTAATATTGGTGATGTACGAGGACAAGGATATGATAACGGATCTAACATGAGAGGAAAACACAAAGGTGTGCAGAAGAGACTTCTTGAGGTAAATCCTAGAGCATTTTATACGCCTTGTGGTTGTCATAGTCTAAATCTTGCTATTTGTGATATGGCTAATTGTACTCCTAAAGCTGATTATTTTTTTGGAGTGGTACAACGGATATATTCATTCTTCTCATCTTCTACAAAGCAATGGCAAGTTTTCAGGGATCATGTGGAAGGGCTCACTCTTAAACCATTGTCTGAAACAAGATGGGAGAGTCGTGTTGATAGTATAAAAACATTTAGATTCCAAGCTCCCAAAATAAGAGAGGCTTTAGCTTACTTGGGAAAAAATGGTGTTGATTCCAAAACAAGGTGTGAAGCCGAATGCATGGCAACATATGAAATGGGGAATTTTGAGTTCTTGTTCGGGATGGATATTTGGTATGATTTATTACATGCTATCAATATTGTCAGTAAAGTTCTTCAAACCGAAGACATGCATATTGATGTTGCCATTGAAGAATTGGAGAAGCTTATTTCATTTATTCAGAAGTACAGAGAAACTGGATTTAATAATGCCTTGATCATAGCTAAAGAAATTTTAAGTGAGATGAAAGTTGAAGCAGTATTCCGTGAAAAGAGAACCACCCGGAAAAGAAAGCATTTTGATGATAGCGATAGTGAAGAGGAGTTGGCACAATCAGCTTTGGAATCATTTAAGGAAAGATTGAATGGTTTAGCTTTGTTGTCGATTGAAAAAGAGTTGGCTCAAGAGCTTGATTATTCAAGCTTAATTGAAACTTTTGCAGCCAAGAATGCAAGAAGAGTTGTTTTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

551

Amino Acids

63.27

Weight (kDa)

5.06

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 94, 461, 832, 1044
AcsI RAATTY 2 cut(s) 1222, 1410
AcuI CTGAAG 4 cut(s) 9, 264, 348, 420
AfaI GTAC 7 cut(s) 101, 136, 644, 801, 949, 981, 1367
AfiI CCNNNNNNNGG 1 cut(s) 1182
AjnI CCWGG 1 cut(s) 469
AleI CACNNNNGTG 1 cut(s) 849
Alw26I GTCTC 2 cut(s) 565, 856
AlwI GGATC 4 cut(s) 94, 461, 832, 1044
AlwNI CAGNNNCTG 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 1619
ApoI RAATTY 2 cut(s) 1222, 1410
AspS9I GGNCC 1 cut(s) 524
AsuC2I CCSGG 1 cut(s) 1462
AsuHPI GGTGA 2 cut(s) 626, 806
AvaII GGWCC 1 cut(s) 524
BanII GRGCYC 1 cut(s) 1053
BbsI GAAGAC 1 cut(s) 1311
BbvI GCAGC 1 cut(s) 1631
BccI CCATC 2 cut(s) 1074, 1237
BcgI CGANNNNNNTGC 2 cut(s) 761, 795
BciT130I CCWGG 1 cut(s) 471
BciVI GTATCC 1 cut(s) 30
BclI TGATCA 4 cut(s) 250, 334, 418, 1395
BcnI CCSGG 1 cut(s) 1462
BcoDI GTCTC 2 cut(s) 565, 856
BfaI CTAG 1 cut(s) 882
BfuI GTATCC 1 cut(s) 30
BglII AGATCT 1 cut(s) 376
BisI GCNGC 1 cut(s) 1620
BlsI GCNGC 1 cut(s) 1621
BmcAI AGTACT 1 cut(s) 101
Bme1390I CCNGG 2 cut(s) 471, 1462
Bme18I GGWCC 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 524
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 471, 1462
BmsI GCATC 5 cut(s) 52, 250, 334, 550, 769
BpiI GAAGAC 1 cut(s) 1311
BpuEI CTTGAG 2 cut(s) 890, 1566
BpuMI CCSGG 1 cut(s) 1462
BsaJI CCNNGG 1 cut(s) 564
Bsc4I CCNNNNNNNGG 1 cut(s) 1182
Bse1I ACTGG 1 cut(s) 1381
Bse3DI GCAATG 1 cut(s) 1025
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 564
BseGI GGATG 2 cut(s) 151, 1248
BseLI CCNNNNNNNGG 1 cut(s) 1182
BseMI GCAATG 1 cut(s) 1025
BseMII CTCAG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 1381
BseRI GAGGAG 1 cut(s) 1514
BseXI GCAGC 1 cut(s) 1631
BsgI GTGCAG 1 cut(s) 875
BsiSI CCGG 1 cut(s) 1462
BslI CCNNNNNNNGG 1 cut(s) 1182
BsmAI GTCTC 2 cut(s) 565, 856
BsmI GAATGC 3 cut(s) 181, 1202, 1633
Bsp1286I GDGCHC 1 cut(s) 1053
Bsp143I GATC 9 cut(s) 86, 250, 334, 376, 418, 466, 824, 1036, 1395
Bsp19I CCATGG 1 cut(s) 564
BspCNI CTCAG 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 4 cut(s) 94, 461, 832, 1044
BsrDI GCAATG 1 cut(s) 1025
BsrI ACTGG 1 cut(s) 1381
BssECI CCNNGG 1 cut(s) 564
BssMI GATC 9 cut(s) 86, 250, 334, 376, 418, 466, 824, 1036, 1395
BssT1I CCWWGG 1 cut(s) 564
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 1 cut(s) 385
Bst6I CTCTTC 3 cut(s) 854, 1491, 1630
BstDEI CTNAG 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 2 cut(s) 151, 1248
BstKTI GATC 9 cut(s) 89, 253, 337, 379, 421, 469, 827, 1039, 1398
BstMAI GTCTC 2 cut(s) 565, 856
BstMBI GATC 9 cut(s) 86, 250, 334, 376, 418, 466, 824, 1036, 1395
BstMWI GCNNNNNNNGC 2 cut(s) 1514, 1628
BstNI CCWGG 1 cut(s) 471
BstNSI RCATGY 4 cut(s) 267, 444, 1271, 1312
BstSCI CCNGG 2 cut(s) 469, 1460
BstV1I GCAGC 1 cut(s) 1631
BstV2I GAAGAC 1 cut(s) 1311
BstX2I RGATCY 3 cut(s) 86, 376, 824
BstXI CCANNNNNNTGG 1 cut(s) 477
BstYI RGATCY 3 cut(s) 86, 376, 824
BsuI GTATCC 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 564
BtsCI GGATG 2 cut(s) 151, 1248
BtsIMutI CAGTG 1 cut(s) 390
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 524
Csp6I GTAC 7 cut(s) 100, 135, 643, 800, 948, 980, 1366
CviAII CATG 9 cut(s) 152, 264, 441, 565, 832, 1040, 1201, 1268, 1309
CviQI GTAC 7 cut(s) 100, 135, 643, 800, 948, 980, 1366
DdeI CTNAG 1 cut(s) 212
DpnI GATC 9 cut(s) 88, 252, 336, 378, 420, 468, 826, 1038, 1397
DpnII GATC 9 cut(s) 86, 250, 334, 376, 418, 466, 824, 1036, 1395
Eam1104I CTCTTC 3 cut(s) 854, 1491, 1630
EarI CTCTTC 3 cut(s) 854, 1491, 1630
Eco130I CCWWGG 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 1053
Eco47I GGWCC 1 cut(s) 524
Eco57I CTGAAG 4 cut(s) 9, 264, 348, 420
EcoO109I RGGNCCY 1 cut(s) 524
EcoRII CCWGG 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 564
EcoT22I ATGCAT 4 cut(s) 67, 265, 1202, 1314
EcoT38I GRGCYC 1 cut(s) 1053
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 9 cut(s) 155, 267, 444, 568, 835, 1043, 1204, 1271, 1312
FalI AAGNNNNNCTT 2 cut(s) 1126, 1158
FatI CATG 9 cut(s) 151, 263, 440, 564, 831, 1039, 1200, 1267, 1308
FauNDI CATATG 1 cut(s) 1210
FbaI TGATCA 4 cut(s) 250, 334, 418, 1395
Fnu4HI GCNGC 1 cut(s) 1620
FokI GGATG 2 cut(s) 158, 1255
FriOI GRGCYC 1 cut(s) 1053
Fsp4HI GCNGC 1 cut(s) 1620
FspBI CTAG 1 cut(s) 882
GluI GCNGC 1 cut(s) 1620
HapII CCGG 1 cut(s) 1462
Hin1II CATG 9 cut(s) 155, 267, 444, 568, 835, 1043, 1204, 1271, 1312
HindIII AAGCTT 2 cut(s) 1343, 1600
HinfI GANTC 5 cut(s) 428, 1087, 1116, 1172, 1523
HpaII CCGG 1 cut(s) 1462
HphI GGTGA 2 cut(s) 626, 806
Hpy166II GTNNAC 1 cut(s) 643
Hpy188I TCNGA 4 cut(s) 215, 658, 1072, 1362
Hpy188III TCNNGA 7 cut(s) 84, 326, 503, 554, 869, 1240, 1583
Hpy8I GTNNAC 1 cut(s) 643
HpyAV CCTTC 4 cut(s) 33, 624, 728, 1040
HpyCH4III ACNGT 1 cut(s) 385
HpyF10VI GCNNNNNNNGC 2 cut(s) 1514, 1628
HpyF3I CTNAG 1 cut(s) 212
Hsp92II CATG 9 cut(s) 155, 267, 444, 568, 835, 1043, 1204, 1271, 1312
Ksp22I TGATCA 4 cut(s) 250, 334, 418, 1395
Kzo9I GATC 9 cut(s) 86, 250, 334, 376, 418, 466, 824, 1036, 1395
LmnI GCTCC 2 cut(s) 10, 1129
Lsp1109I GCAGC 1 cut(s) 1631
LweI GCATC 5 cut(s) 52, 250, 334, 550, 769
MaeI CTAG 1 cut(s) 882
MalI GATC 9 cut(s) 88, 252, 336, 378, 420, 468, 826, 1038, 1397
MboI GATC 9 cut(s) 86, 250, 334, 376, 418, 466, 824, 1036, 1395
MflI RGATCY 3 cut(s) 86, 376, 824
MhlI GDGCHC 1 cut(s) 1053
MlyI GAGTC 1 cut(s) 1096
Mph1103I ATGCAT 4 cut(s) 67, 265, 1202, 1314
MseI TTAA 7 cut(s) 759, 786, 1059, 1383, 1415, 1530, 1604
MslI CAYNNNNRTG 4 cut(s) 156, 849, 1317, 1479
MspI CCGG 1 cut(s) 1462
MspR9I CCNGG 2 cut(s) 471, 1462
Mva1269I GAATGC 3 cut(s) 181, 1202, 1633
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 2 cut(s) 1514, 1628
NciI CCSGG 1 cut(s) 1462
NcoI CCATGG 1 cut(s) 564
NdeI CATATG 1 cut(s) 1210
NdeII GATC 9 cut(s) 86, 250, 334, 376, 418, 466, 824, 1036, 1395
NlaIII CATG 9 cut(s) 155, 267, 444, 568, 835, 1043, 1204, 1271, 1312
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 4 cut(s) 67, 265, 1202, 1314
NspI RCATGY 4 cut(s) 267, 444, 1271, 1312
OliI CACNNNNGTG 1 cut(s) 849
PctI GAATGC 3 cut(s) 181, 1202, 1633
PfeI GAWTC 4 cut(s) 428, 1116, 1172, 1523
PfoI TCCNGGA 1 cut(s) 469
PkrI GCNGC 1 cut(s) 1621
PleI GAGTC 1 cut(s) 1095
PpsI GAGTC 1 cut(s) 1095
PpuMI RGGWCCY 1 cut(s) 524
Psp5II RGGWCCY 1 cut(s) 524
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 524
PspPPI RGGWCCY 1 cut(s) 524
PstNI CAGNNNCTG 1 cut(s) 137
PsuI RGATCY 3 cut(s) 86, 376, 824
RsaI GTAC 7 cut(s) 101, 136, 644, 801, 949, 981, 1367
RsaNI GTAC 7 cut(s) 100, 135, 643, 800, 948, 980, 1366
RseI CAYNNNNRTG 4 cut(s) 156, 849, 1317, 1479
SaqAI TTAA 7 cut(s) 759, 786, 1059, 1383, 1415, 1530, 1604
SatI GCNGC 1 cut(s) 1620
Sau3AI GATC 9 cut(s) 86, 250, 334, 376, 418, 466, 824, 1036, 1395
Sau96I GGNCC 1 cut(s) 524
ScaI AGTACT 1 cut(s) 101
SchI GAGTC 1 cut(s) 1096
ScrFI CCNGG 2 cut(s) 471, 1462
SduI GDGCHC 1 cut(s) 1053
SfaNI GCATC 5 cut(s) 52, 250, 334, 550, 769
SinI GGWCC 1 cut(s) 524
SmiMI CAYNNNNRTG 4 cut(s) 156, 849, 1317, 1479
SmlI CTYRAG 2 cut(s) 869, 1581
SmoI CTYRAG 2 cut(s) 869, 1581
SspI AATATT 2 cut(s) 790, 1279
SspMI CTAG 1 cut(s) 882
StyD4I CCNGG 2 cut(s) 469, 1460
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 1 cut(s) 385
TaqI TCGA 4 cut(s) 456, 502, 771, 1562
TatI WGTACW 4 cut(s) 99, 642, 947, 1365
TfiI GAWTC 4 cut(s) 428, 1116, 1172, 1523
Tru1I TTAA 7 cut(s) 759, 786, 1059, 1383, 1415, 1530, 1604
Tru9I TTAA 7 cut(s) 759, 786, 1059, 1383, 1415, 1530, 1604
TscAI CASTG 1 cut(s) 390
TseI GCWGC 1 cut(s) 1619
TspDTI ATGAA 6 cut(s) 317, 747, 984, 1227, 1341, 1439
TspGWI ACGGA 3 cut(s) 837, 1000, 1433
TspRI CASTG 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 524
XapI RAATTY 2 cut(s) 1222, 1410
XceI RCATGY 4 cut(s) 267, 444, 1271, 1312
XcmI CCANNNNNNNNNTGG 1 cut(s) 1333
XspI CTAG 1 cut(s) 882
ZrmI AGTACT 1 cut(s) 101
Zsp2I ATGCAT 4 cut(s) 67, 265, 1202, 1314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.