Rorug05G0465700

Domain of unknown function (DUF4371)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000215
Physical Location & Seq
Reverse (-)
64141420 .. 64142486
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0465700.1

Sequence Viewer

Length: 744 bp
ATGCCGGCCACCGCAGGAAGGGTTCGCATGCCCCCAAACAATCGGGTACACAGTAGTGTTGCCCTTCAAACTCATGGTATATGGCAGAGTACAATTGGGTACGATCCCTATGCACCTCAGCCGAATTTGTCAAACTCAAAACCAGATGCTGAGAATGCATATGCTAGCTATCAAGGCCTTCTCCAACTCGCTCGTATAACTGGGCCGAATTCTGACGAGGTTCGTGGGGCGTGCAAGAGGTGCGGCCGGGTTGGGCACCTCACCTATCAATGTAGGAATTTTCTGAGTGCTAAGGACAAGGAGAAGGAGGACCCTGAAGCTATCCAGGCTGATGTTGCTTCTGAGTTGGGCAAGTTGAAGGGGAAGCTGGGTAAAGCGAAGGAAAAAGATGTTGTTAAGACTGATAGTGAGGAGGAGGATGAAGACATTGAGAGTTCAGATTCGGACTATGATTCTGATATGGAGAGGCTCATTGCTCAAAGATATGGGAAAAAGAGTTTTCGAAAGGAGAAGCTGAAAAAGAAGAACAAGGACTCGGATGTTGATGGTTCAGATACAGATTCTGGGGAGAGGAAGAAGAGAGGAAGGTCGAAGAAGAGGAGAAGCAGAAAGAGGAAACATGATGATTCAGATGATTCTGAAAAGGATAGGAAGAAAAGAGGAAAGGAGAAACGGAGAAAGAGAGATGAGTCCTCGGATGAGGATGATAAACGACGTCGACGACATGGGAAGAGTAGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

247

Amino Acids

28.16

Weight (kDa)

9.58

Isoelectric Point (pI)

64.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_3 PF13917 74 - 93 1.3e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 718
AccB1I GGYRCC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 718
AciI CCGC 2 cut(s) 12, 243
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 2 cut(s) 6, 244
AcsI RAATTY 3 cut(s) 124, 208, 277
AcuI CTGAAG 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 715
AfaI GTAC 3 cut(s) 48, 91, 101
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 2 cut(s) 68, 358
AjnI CCWGG 1 cut(s) 324
AleI CACNNNNGTG 1 cut(s) 54
AluBI AGCT 4 cut(s) 168, 320, 367, 514
AluI AGCT 4 cut(s) 168, 320, 367, 514
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 2 cut(s) 149, 563
AoxI GGCC 4 cut(s) 6, 175, 203, 244
ApoI RAATTY 3 cut(s) 124, 208, 277
AspS9I GGNCC 2 cut(s) 203, 310
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 253
AsuII TTCGAA 1 cut(s) 502
AsuNHI GCTAGC 1 cut(s) 164
AvaII GGWCC 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 429
BbvCI CCTCAGC 1 cut(s) 117
BccI CCATC 1 cut(s) 539
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 326
BcnI CCSGG 1 cut(s) 248
BfaI CTAG 1 cut(s) 165
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
Bme1390I CCNGG 2 cut(s) 248, 326
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 203, 310
BmiI GGNNCC 2 cut(s) 257, 312
BmrFI CCNGG 2 cut(s) 248, 326
BmrI ACTGGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 136
BmtI GCTAGC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 429
Bpu10I CCTNAGC 2 cut(s) 117, 291
Bpu14I TTCGAA 1 cut(s) 502
BpuMI CCSGG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 715
BsaJI CCNNGG 1 cut(s) 693
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 1 cut(s) 693
BseGI GGATG 4 cut(s) 424, 544, 703, 709
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 4 cut(s) 131, 141, 275, 333
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 3 cut(s) 425, 428, 613
BseSI GKGCMC 1 cut(s) 258
BseX3I CGGCCG 1 cut(s) 244
BseYI CCCAGC 1 cut(s) 367
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 4 cut(s) 8, 177, 205, 246
BshNI GGYRCC 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 247
BsiSI CCGG 2 cut(s) 5, 247
BslI CCNNNNNNNGG 1 cut(s) 18
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 4 cut(s) 8, 177, 205, 246
Bsp119I TTCGAA 1 cut(s) 502
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 2 cut(s) 12, 243
BspANI GGCC 4 cut(s) 8, 177, 205, 246
BspCNI CTCAG 4 cut(s) 130, 142, 276, 334
BspLI GGNNCC 2 cut(s) 257, 312
BspOI GCTAGC 1 cut(s) 168
BspPI GGATC 1 cut(s) 98
BspT104I TTCGAA 1 cut(s) 502
BspT107I GGYRCC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 693
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 715
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 3 cut(s) 572, 590, 725
BstACI GRCGYC 1 cut(s) 715
BstAPI GCANNNNNTGC 1 cut(s) 240
BstBI TTCGAA 1 cut(s) 502
BstC8I GCNNGC 4 cut(s) 6, 29, 166, 232
BstDEI CTNAG 5 cut(s) 117, 150, 284, 291, 342
BstF5I GGATG 4 cut(s) 424, 544, 703, 709
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 5 cut(s) 155, 174, 240, 326, 335
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 246, 324
BstSLI GKGCMC 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 429
BstZI CGGCCG 1 cut(s) 244
BsuRI GGCC 4 cut(s) 8, 177, 205, 246
BtsCI GGATG 4 cut(s) 424, 544, 703, 709
Cac8I GCNNGC 4 cut(s) 6, 29, 166, 232
CaiI CAGNNNCTG 2 cut(s) 149, 563
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 2 cut(s) 203, 310
Csp6I GTAC 3 cut(s) 47, 90, 100
CviAII CATG 4 cut(s) 28, 74, 620, 725
CviQI GTAC 3 cut(s) 47, 90, 100
DdeI CTNAG 5 cut(s) 117, 150, 284, 291, 342
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 2 cut(s) 6, 244
EagI CGGCCG 1 cut(s) 244
Eam1104I CTCTTC 3 cut(s) 572, 590, 725
EarI CTCTTC 3 cut(s) 572, 590, 725
EclXI CGGCCG 1 cut(s) 244
Eco147I AGGCCT 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 310
Eco52I CGGCCG 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 336
EcoO109I RGGNCCY 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 4 cut(s) 31, 77, 623, 728
FatI CATG 4 cut(s) 27, 73, 619, 724
FauNDI CATATG 1 cut(s) 160
FblI GTMKAC 1 cut(s) 718
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 4 cut(s) 431, 551, 710, 716
Fsp4HI GCNGC 1 cut(s) 244
FspBI CTAG 1 cut(s) 165
GluI GCNGC 1 cut(s) 244
GsaI CCCAGC 1 cut(s) 371
HaeIII GGCC 4 cut(s) 8, 177, 205, 246
HapII CCGG 2 cut(s) 5, 247
Hin1I GRCGYC 1 cut(s) 715
Hin1II CATG 4 cut(s) 31, 77, 623, 728
HincII GTYRAC 1 cut(s) 719
HindII GTYRAC 1 cut(s) 719
HinfI GANTC 7 cut(s) 440, 452, 533, 560, 626, 635, 689
HpaII CCGG 2 cut(s) 5, 247
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 49, 719
Hpy8I GTNNAC 2 cut(s) 49, 719
Hpy99I CGWCG 3 cut(s) 717, 720, 723
HpyAV CCTTC 7 cut(s) 12, 74, 188, 298, 352, 373, 579
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 715
HpyCH4V TGCA 3 cut(s) 113, 158, 234
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 174, 240, 326, 335
HpyF3I CTNAG 5 cut(s) 117, 150, 284, 291, 342
HpySE526I ACGT 1 cut(s) 715
Hsp92I GRCGYC 1 cut(s) 715
Hsp92II CATG 4 cut(s) 31, 77, 623, 728
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 9 cut(s) 18, 156, 186, 260, 311, 327, 338, 353, 549
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 715
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 8 cut(s) 434, 535, 586, 589, 604, 607, 664, 742
MfeI CAATTG 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 4 cut(s) 93, 124, 208, 277
MlyI GAGTC 2 cut(s) 527, 698
MmeI TCCRAC 1 cut(s) 208
Mph1103I ATGCAT 1 cut(s) 160
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 2 cut(s) 5, 247
MspR9I CCNGG 2 cut(s) 248, 326
MunI CAATTG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 5 cut(s) 155, 174, 240, 326, 335
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 1 cut(s) 248
NdeI CATATG 1 cut(s) 160
NdeII GATC 1 cut(s) 103
NgoMIV GCCGGC 1 cut(s) 4
NheI GCTAGC 1 cut(s) 164
NlaIII CATG 4 cut(s) 31, 77, 623, 728
NlaIV GGNNCC 2 cut(s) 257, 312
NsiI ATGCAT 1 cut(s) 160
NspI RCATGY 1 cut(s) 31
NspV TTCGAA 1 cut(s) 502
OliI CACNNNNGTG 1 cut(s) 54
PaeI GCATGC 1 cut(s) 31
PceI AGGCCT 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 718
PctI GAATGC 1 cut(s) 160
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 5 cut(s) 440, 452, 560, 626, 635
PkrI GCNGC 1 cut(s) 245
PleI GAGTC 2 cut(s) 527, 697
PpsI GAGTC 2 cut(s) 527, 697
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 367
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 2 cut(s) 257, 312
PspPI GGNCC 2 cut(s) 203, 310
PspPPI RGGWCCY 1 cut(s) 310
PstNI CAGNNNCTG 2 cut(s) 149, 563
RsaI GTAC 3 cut(s) 48, 91, 101
RsaNI GTAC 3 cut(s) 47, 90, 100
RseI CAYNNNNRTG 1 cut(s) 54
SalI GTCGAC 1 cut(s) 717
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 2 cut(s) 203, 310
SchI GAGTC 2 cut(s) 527, 698
ScrFI CCNGG 2 cut(s) 248, 326
SduI GDGCHC 1 cut(s) 258
SfaNI GCATC 1 cut(s) 136
SfuI TTCGAA 1 cut(s) 502
SgrDI CGTCGACG 1 cut(s) 717
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 54
SphI GCATGC 1 cut(s) 31
Sse9I AATT 4 cut(s) 93, 124, 208, 277
SseBI AGGCCT 1 cut(s) 177
SsiI CCGC 2 cut(s) 12, 243
SspMI CTAG 1 cut(s) 165
StuI AGGCCT 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 246, 324
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 718
TaqI TCGA 3 cut(s) 502, 590, 718
TasI AATT 4 cut(s) 93, 124, 208, 277
TatI WGTACW 1 cut(s) 89
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 5 cut(s) 440, 452, 560, 626, 635
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TspDTI ATGAA 1 cut(s) 435
TspGWI ACGGA 1 cut(s) 688
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 3 cut(s) 124, 208, 277
XceI RCATGY 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 718
XspI CTAG 1 cut(s) 165
ZraI GACGTC 1 cut(s) 716
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.