FvH4_1g26762

Zinc finger MYM-type protein 1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
18623357 .. 18625383
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26762.t1

Sequence Viewer

Length: 468 bp
ATGGCGGTTGTGAAAAGACTTGCAAAAAACAATTTGGCATTTTGTGGGAGCAATGAGAAATTGTGTGAGGAGAACAATGGGGTTTTCTTACAAGTGATTGAGATGATCGCTGAGTTTGATCCAGTGATGCATGAACATGTTCGGCGTGTTTTTAAAAAAGAAACTCATTACCATTACTTGAGTCATAAGATCCAGAATGAAATGATTCAGCTTCTAGCAAATGAGGTAAAAGCTTCCATAGTTACAGCAATCAAAGAGGCAAAATACTTTTCAGTTATACTTGATTGCACTCTAAATGCGAGCCATGAGGAACAAATGTCGTTTGTTGGCCGGTGTGTTGATGTTACAGCAAGTCCTATTGTGGTGAAAGAATACTTTTTGGTATTTTTAAAGGGGGATGATACATCAGGACTTGGACGTACTAGCCCTGAAATTGTCATGGATGATCCTGTTGATACCGATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

156

Amino Acids

17.52

Weight (kDa)

5.33

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 3 - 140 2.5e-10 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 3 cut(s) 113, 184, 440
AcoI YGGCCR 1 cut(s) 328
AfaI GTAC 1 cut(s) 421
AflIII ACRYGT 1 cut(s) 136
AluBI AGCT 2 cut(s) 211, 233
AluI AGCT 2 cut(s) 211, 233
AlwI GGATC 3 cut(s) 113, 184, 440
AoxI GGCC 1 cut(s) 328
Asp700I GAANNNNTTC 2 cut(s) 138, 204
AsuHPI GGTGA 1 cut(s) 376
BfaI CTAG 2 cut(s) 215, 423
BmsI GCATC 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 199
Bse118I RCCGGY 1 cut(s) 330
Bse1I ACTGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 58
BseGI GGATG 2 cut(s) 403, 448
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 83
BshFI GGCC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 331
BsnI GGCC 1 cut(s) 330
Bsp143I GATC 4 cut(s) 105, 118, 189, 445
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 103
BspPI GGATC 3 cut(s) 113, 184, 440
BsrDI GCAATG 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 330
BsrI ACTGG 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 330
BssMI GATC 4 cut(s) 105, 118, 189, 445
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 403, 448
BstKTI GATC 4 cut(s) 108, 121, 192, 448
BstMBI GATC 4 cut(s) 105, 118, 189, 445
BstNSI RCATGY 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BsuRI GGCC 1 cut(s) 330
BtsCI GGATG 2 cut(s) 403, 448
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 330
Csp6I GTAC 1 cut(s) 420
CviAII CATG 5 cut(s) 131, 137, 305, 439, 465
CviJI RGCY 5 cut(s) 211, 233, 303, 330, 426
CviKI_1 RGCY 5 cut(s) 211, 233, 303, 330, 426
CviQI GTAC 1 cut(s) 420
DdeI CTNAG 1 cut(s) 111
DpnI GATC 4 cut(s) 107, 120, 191, 447
DpnII GATC 4 cut(s) 105, 118, 189, 445
DraI TTTAAA 2 cut(s) 154, 390
EaeI YGGCCR 1 cut(s) 328
EcoT22I ATGCAT 1 cut(s) 132
FaeI CATG 5 cut(s) 134, 140, 308, 442, 468
FaiI YATR 8 cut(s) 132, 138, 186, 239, 278, 306, 440, 466
FatI CATG 5 cut(s) 130, 136, 304, 438, 464
FokI GGATG 2 cut(s) 410, 455
FspBI CTAG 2 cut(s) 215, 423
HaeIII GGCC 1 cut(s) 330
HapII CCGG 1 cut(s) 331
Hin1II CATG 5 cut(s) 134, 140, 308, 442, 468
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 2 cut(s) 181, 205
HpaII CCGG 1 cut(s) 331
HphI GGTGA 1 cut(s) 376
Hpy188III TCNNGA 2 cut(s) 193, 408
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 3 cut(s) 23, 130, 288
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 418
Hsp92II CATG 5 cut(s) 134, 140, 308, 442, 468
Kzo9I GATC 4 cut(s) 105, 118, 189, 445
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 6 cut(s) 135, 206, 344, 393, 441, 462
LweI GCATC 1 cut(s) 117
MaeI CTAG 2 cut(s) 215, 423
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 2 cut(s) 241, 343
MalI GATC 4 cut(s) 107, 120, 191, 447
MboI GATC 4 cut(s) 105, 118, 189, 445
MflI RGATCY 1 cut(s) 189
MluCI AATT 3 cut(s) 31, 59, 432
MlyI GAGTC 1 cut(s) 190
MnlI CCTC 4 cut(s) 61, 217, 250, 301
Mph1103I ATGCAT 1 cut(s) 132
MroXI GAANNNNTTC 2 cut(s) 138, 204
MseI TTAA 2 cut(s) 153, 389
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 1 cut(s) 331
NdeII GATC 4 cut(s) 105, 118, 189, 445
NlaIII CATG 5 cut(s) 134, 140, 308, 442, 468
NsiI ATGCAT 1 cut(s) 132
NspI RCATGY 1 cut(s) 140
PciI ACATGT 1 cut(s) 136
PdmI GAANNNNTTC 2 cut(s) 138, 204
PfeI GAWTC 1 cut(s) 205
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PscI ACATGT 1 cut(s) 136
PsuI RGATCY 1 cut(s) 189
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 2 cut(s) 153, 389
Sau3AI GATC 4 cut(s) 105, 118, 189, 445
SchI GAGTC 1 cut(s) 190
SetI ASST 4 cut(s) 213, 228, 235, 421
SfaNI GCATC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
Sse9I AATT 3 cut(s) 31, 59, 432
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 215, 423
TaiI ACGT 1 cut(s) 421
TasI AATT 3 cut(s) 31, 59, 432
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 153, 389
Tru9I TTAA 2 cut(s) 153, 389
TscAI CASTG 1 cut(s) 129
TspDTI ATGAA 2 cut(s) 147, 213
TspRI CASTG 1 cut(s) 129
XceI RCATGY 1 cut(s) 140
XmnI GAANNNNTTC 2 cut(s) 138, 204
XspI CTAG 2 cut(s) 215, 423
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.