Rmu_sc0008191.1_g000019

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008191.1
OG0000215
Physical Location & Seq
Reverse (-)
112285 .. 114237
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008191.1_g000019.1.cds

Sequence Viewer

Length: 1176 bp
atggctcctactagaaaatttaagtctggccctcagaaaagaaaagagaaagagaggagaaaagctttacataaaactcaagttggttctcttaaaaaatattttagtagcaacaaagaagaagcatgtcaagctgtgaatgatactgaagaggcagaagagctaaatcaatcaaagaatgaggaaaataatgaaattctcaatgaagatgttcacattacagagccaaatcagtcagaaaatgaggaaattaatgacactatcaatgaagatgttcacactacaagttcaagggaggaaattcttttcaacatggatgatcaagggaattggaataggacaaaccaaaatattacagattttttggtggttgaaagagacccgaaaagagacaataatgtcatctttctgaaagataaatgtgacagatgtttttcttcaaaacatgcaagtaatgcagaacaaacgtctcttgtattaagaagtgtcaatgtttcggctactccaattgtggttgaagaatattttttagaattcttgaaggctgctgacacatctggtcttggactgcttaatgaacttctaactgcattgaagactcttggacttgatgtcaatgatataagaggccaagggtatgacaatggatccaacatgaaaggaaaaaacaaagcttttacaaagagatggcaggtttttacagagcatgtgacaggtcctactgttaagccattattagaaactcgttggggaagtcatgtggagagtgtcaaagcaataaggtatcaagctccaaaaataagagaggctttgattcacttggtgaatggtaaagaagatgccaagacaaaatttgatgctgatactatagcaacatataatcttcagaattttgagttcttgttgggtatgattatatggtatgaattgttacaagttgttaacaatgtcagcaaagttctgcaaactaaagatatgcatattgatactgccattaaacaattggaacgtcttctttcatttcttcaaaagtttagagaaactggatttgaggagtccttgattgaagctaaagagattacaagtgagatggagattgaaccattaattgtgttgccctacttattgatctccaaatatcgtgaaattttgatagatttctcttctgctagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

391

Amino Acids

44.84

Weight (kDa)

5.36

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 398
Acc36I ACCTGC 1 cut(s) 682
AclWI GGATC 2 cut(s) 642, 655
AcsI RAATTY 7 cut(s) 17, 195, 300, 533, 851, 889, 1146
AcuI CTGAAG 2 cut(s) 168, 869
AdeI CACNNNGTG 1 cut(s) 823
AhdI GACNNNNNGTC 1 cut(s) 611
AluBI AGCT 6 cut(s) 65, 134, 163, 674, 791, 1070
AluI AGCT 6 cut(s) 65, 134, 163, 674, 791, 1070
Alw26I GTCTC 3 cut(s) 372, 384, 474
AlwI GGATC 2 cut(s) 642, 655
AoxI GGCC 2 cut(s) 28, 628
ApeKI GCWGC 1 cut(s) 545
ApoI RAATTY 7 cut(s) 17, 195, 300, 533, 851, 889, 1146
AseI ATTAAT 2 cut(s) 252, 1106
Asp700I GAANNNNTTC 3 cut(s) 210, 273, 1011
AspS9I GGNCC 2 cut(s) 29, 716
AsuHPI GGTGA 1 cut(s) 835
AvaII GGWCC 1 cut(s) 716
BamHI GGATCC 1 cut(s) 647
BbsI GAAGAC 2 cut(s) 602, 1004
BbvI GCAGC 1 cut(s) 532
BccI CCATC 2 cut(s) 681, 1084
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 3 cut(s) 372, 384, 474
BfaI CTAG 2 cut(s) 12, 1170
BfmI CTRYAG 1 cut(s) 867
BfuAI ACCTGC 1 cut(s) 682
BisI GCNGC 1 cut(s) 546
BlsI GCNGC 1 cut(s) 547
Bme18I GGWCC 1 cut(s) 716
BmeRI GACNNNNNGTC 1 cut(s) 611
BmgT120I GGNCC 2 cut(s) 29, 716
BmiI GGNNCC 2 cut(s) 6, 649
BmsI GCATC 2 cut(s) 829, 847
BpiI GAAGAC 2 cut(s) 602, 1004
BpuEI CTTGAG 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 631
Bse1I ACTGG 1 cut(s) 1048
BseDI CCNNGG 1 cut(s) 631
BseGI GGATG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 1048
BseRI GAGGAG 2 cut(s) 70, 1067
BseXI GCAGC 1 cut(s) 532
BshFI GGCC 2 cut(s) 30, 630
BsmAI GTCTC 3 cut(s) 372, 384, 474
BsmBI CGTCTC 1 cut(s) 474
BsnI GGCC 2 cut(s) 30, 630
Bso31I GGTCTC 1 cut(s) 372
Bsp143I GATC 3 cut(s) 319, 647, 1128
BspANI GGCC 2 cut(s) 30, 630
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 6, 649
BspMI ACCTGC 1 cut(s) 682
BspPI GGATC 2 cut(s) 642, 655
BspQI GCTCTTC 1 cut(s) 153
BspTNI GGTCTC 1 cut(s) 372
BsrI ACTGG 1 cut(s) 1048
BssECI CCNNGG 1 cut(s) 631
BssMI GATC 3 cut(s) 319, 647, 1128
BssT1I CCWWGG 1 cut(s) 631
Bst4CI ACNGT 1 cut(s) 724
Bst6I CTCTTC 3 cut(s) 144, 153, 1168
BstAPI GCANNNNNTGC 1 cut(s) 455
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 3 cut(s) 322, 650, 1131
BstMAI GTCTC 3 cut(s) 372, 384, 474
BstMBI GATC 3 cut(s) 319, 647, 1128
BstMWI GCNNNNNNNGC 2 cut(s) 131, 455
BstNSI RCATGY 3 cut(s) 129, 449, 710
BstSFI CTRYAG 1 cut(s) 867
BstV1I GCAGC 1 cut(s) 532
BstV2I GAAGAC 2 cut(s) 602, 1004
BstX2I RGATCY 1 cut(s) 647
BstYI RGATCY 1 cut(s) 647
BsuRI GGCC 2 cut(s) 30, 630
BtsCI GGATG 1 cut(s) 322
BveI ACCTGC 1 cut(s) 682
Cfr13I GGNCC 2 cut(s) 29, 716
CviAII CATG 6 cut(s) 126, 313, 446, 655, 707, 758
DdeI CTNAG 1 cut(s) 33
DpnI GATC 3 cut(s) 321, 649, 1130
DpnII GATC 3 cut(s) 319, 647, 1128
DraIII CACNNNGTG 1 cut(s) 823
DrdI GACNNNNNNGTC 1 cut(s) 398
DriI GACNNNNNGTC 1 cut(s) 611
DseDI GACNNNNNNGTC 1 cut(s) 398
Eam1104I CTCTTC 3 cut(s) 144, 153, 1168
Eam1105I GACNNNNNGTC 1 cut(s) 611
EarI CTCTTC 3 cut(s) 144, 153, 1168
Eco130I CCWWGG 1 cut(s) 631
Eco31I GGTCTC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 716
Eco57I CTGAAG 2 cut(s) 168, 869
EcoO109I RGGNCCY 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 533
EcoT14I CCWWGG 1 cut(s) 631
EcoT22I ATGCAT 1 cut(s) 981
ErhI CCWWGG 1 cut(s) 631
Esp3I CGTCTC 1 cut(s) 474
FaeI CATG 6 cut(s) 129, 316, 449, 658, 710, 761
FalI AAGNNNNNCTT 2 cut(s) 793, 825
FatI CATG 6 cut(s) 125, 312, 445, 654, 706, 757
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 1 cut(s) 546
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 546
FspBI CTAG 2 cut(s) 12, 1170
GluI GCNGC 1 cut(s) 546
HaeIII GGCC 2 cut(s) 30, 630
Hin1II CATG 6 cut(s) 129, 316, 449, 658, 710, 761
HincII GTYRAC 1 cut(s) 943
HindII GTYRAC 1 cut(s) 943
HindIII AAGCTT 2 cut(s) 63, 672
HinfI GANTC 3 cut(s) 598, 814, 1055
HpaI GTTAAC 1 cut(s) 943
HphI GGTGA 1 cut(s) 835
Hpy166II GTNNAC 3 cut(s) 214, 277, 943
Hpy188I TCNGA 4 cut(s) 36, 238, 411, 888
Hpy188III TCNNGA 2 cut(s) 538, 1142
Hpy8I GTNNAC 3 cut(s) 214, 277, 943
HpyAV CCTTC 1 cut(s) 535
HpyCH4III ACNGT 1 cut(s) 724
HpyCH4IV ACGT 2 cut(s) 467, 1009
HpyCH4V TGCA 5 cut(s) 449, 458, 590, 964, 979
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 455
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 2 cut(s) 467, 1009
Hsp92II CATG 6 cut(s) 129, 316, 449, 658, 710, 761
Ksp22I TGATCA 1 cut(s) 319
KspAI GTTAAC 1 cut(s) 943
Kzo9I GATC 3 cut(s) 319, 647, 1128
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 2 cut(s) 10, 796
LpnPI CCDG 5 cut(s) 12, 543, 677, 699, 1029
Lsp1109I GCAGC 1 cut(s) 532
LweI GCATC 2 cut(s) 829, 847
MaeI CTAG 2 cut(s) 12, 1170
MaeII ACGT 2 cut(s) 467, 1009
MaeIII GTNAC 3 cut(s) 422, 709, 930
MalI GATC 3 cut(s) 321, 649, 1130
MboI GATC 3 cut(s) 319, 647, 1128
MfeI CAATTG 2 cut(s) 507, 1001
MflI RGATCY 1 cut(s) 647
MlyI GAGTC 2 cut(s) 592, 1064
MmeI TCCRAC 1 cut(s) 675
MnlI CCTC 9 cut(s) 42, 48, 145, 175, 238, 289, 620, 799, 1045
Mph1103I ATGCAT 1 cut(s) 981
MroXI GAANNNNTTC 3 cut(s) 210, 273, 1011
MunI CAATTG 2 cut(s) 507, 1001
MwoI GCNNNNNNNGC 2 cut(s) 131, 455
NdeII GATC 3 cut(s) 319, 647, 1128
NlaIII CATG 6 cut(s) 129, 316, 449, 658, 710, 761
NlaIV GGNNCC 2 cut(s) 6, 649
NmuCI GTSAC 2 cut(s) 422, 709
NsiI ATGCAT 1 cut(s) 981
NspI RCATGY 3 cut(s) 129, 449, 710
PciSI GCTCTTC 1 cut(s) 153
PdmI GAANNNNTTC 3 cut(s) 210, 273, 1011
PfeI GAWTC 1 cut(s) 814
PkrI GCNGC 1 cut(s) 547
PleI GAGTC 2 cut(s) 592, 1063
PpsI GAGTC 2 cut(s) 592, 1063
PpuMI RGGWCCY 1 cut(s) 716
PshBI ATTAAT 2 cut(s) 252, 1106
Psp5II RGGWCCY 1 cut(s) 716
PspN4I GGNNCC 2 cut(s) 6, 649
PspPI GGNCC 2 cut(s) 29, 716
PspPPI RGGWCCY 1 cut(s) 716
PsuI RGATCY 1 cut(s) 647
SapI GCTCTTC 1 cut(s) 153
SatI GCNGC 1 cut(s) 546
Sau3AI GATC 3 cut(s) 319, 647, 1128
Sau96I GGNCC 2 cut(s) 29, 716
SchI GAGTC 2 cut(s) 592, 1064
SfaNI GCATC 2 cut(s) 829, 847
SfcI CTRYAG 1 cut(s) 867
SinI GGWCC 1 cut(s) 716
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
SspI AATATT 3 cut(s) 101, 352, 524
SspMI CTAG 2 cut(s) 12, 1170
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 1 cut(s) 724
TaiI ACGT 2 cut(s) 470, 1012
TfiI GAWTC 1 cut(s) 814
TseFI GTSAC 2 cut(s) 422, 709
TseI GCWGC 1 cut(s) 545
Tsp45I GTSAC 2 cut(s) 422, 709
TspDTI ATGAA 7 cut(s) 207, 219, 282, 591, 671, 939, 1008
VpaK11BI GGWCC 1 cut(s) 716
VspI ATTAAT 2 cut(s) 252, 1106
XapI RAATTY 7 cut(s) 17, 195, 300, 533, 851, 889, 1146
XceI RCATGY 3 cut(s) 129, 449, 710
XcmI CCANNNNNNNNNTGG 1 cut(s) 1000
XmnI GAANNNNTTC 3 cut(s) 210, 273, 1011
XspI CTAG 2 cut(s) 12, 1170
Zsp2I ATGCAT 1 cut(s) 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.