RchiOBHm_Chr5g0034331

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000215
Physical Location & Seq
Forward (+)
28169640 .. 28171144
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31335

Sequence Viewer

Length: 591 bp
ATGTTTCCTAGGAAACAAATCTCAGGTTCTCAAAAAAGAAAAAGAAAGAAAAGAGAAGAAGAAATTATTCAATCTCAACGGGGATCTTTAGATAGATATTTTGTTAAAGAAACAAATGAATCTGTTGAAAATCATGTTGAGAATTTAGTAAATGAACCTGAACTACATATTCATTGTTGTTTGAATCTTGAAACTGCTTTGAGAAATGGTGATGGTTCTGACATTGATGCGAAATATTTGCTTATGGAGTTACAAATTTTGCAGGAAATGTTGCCGAATGAGGCATATGAAACAGATAGGCCTTGGACATCCATTCAAATTATGGAGTTTGCAAAGAAAATGGATATGTTTCCAAGTGTTATGGTTGCCTATAGGATTTTATTAACTATACCGGTGACGGTAGCATCCGCTGAAAGAAGTTTTTCAAAATTAAAATTATTAAAATCTTATTTGCGGACTACCATGACTCAAGATAGGCTGAATAGATTAGCTATTTTAACCATTGAAAGAAATATGTTGGTAAATGTTGACTATGAGAAGATAATTGATGATTTTGCTTCAAGAAATGCAAGAAGGCATCATTTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

196

Amino Acids

23.14

Weight (kDa)

8.83

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 105 - 172 6.9e-13 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 408, 454
AclWI GGATC 1 cut(s) 91
AcsI RAATTY 2 cut(s) 142, 255
AgeI ACCGGT 1 cut(s) 391
AgsI TTSAA 8 cut(s) 71, 128, 184, 191, 317, 426, 506, 561
AluBI AGCT 1 cut(s) 491
AluI AGCT 1 cut(s) 491
AlwI GGATC 1 cut(s) 91
AoxI GGCC 1 cut(s) 299
ApoI RAATTY 2 cut(s) 142, 255
AsiGI ACCGGT 1 cut(s) 391
Asp700I GAANNNNTTC 2 cut(s) 66, 421
AspA2I CCTAGG 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 221, 406
AvrII CCTAGG 1 cut(s) 8
BccI CCATC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 370
BlnI CCTAGG 1 cut(s) 8
BmsI GCATC 3 cut(s) 217, 413, 586
BpuEI CTTGAG 1 cut(s) 453
BsaJI CCNNGG 2 cut(s) 8, 302
BsaWI WCCGGW 1 cut(s) 391
Bse118I RCCGGY 1 cut(s) 391
BseDI CCNNGG 2 cut(s) 8, 302
BseGI GGATG 2 cut(s) 308, 404
BseMII CTCAG 1 cut(s) 36
BshFI GGCC 1 cut(s) 301
BshTI ACCGGT 1 cut(s) 391
BsiSI CCGG 1 cut(s) 392
BsnI GGCC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 83
BspACI CCGC 2 cut(s) 408, 454
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 35
BspPI GGATC 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 391
BssAI RCCGGY 1 cut(s) 391
BssECI CCNNGG 2 cut(s) 8, 302
BssMI GATC 1 cut(s) 83
BssT1I CCWWGG 2 cut(s) 8, 302
Bst4CI ACNGT 1 cut(s) 400
BstDEI CTNAG 1 cut(s) 22
BstF5I GGATG 2 cut(s) 308, 404
BstKTI GATC 1 cut(s) 86
BstMBI GATC 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 370
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 1 cut(s) 301
BtsCI GGATG 2 cut(s) 308, 404
Cfr10I RCCGGY 1 cut(s) 391
CspAI ACCGGT 1 cut(s) 391
CviAII CATG 2 cut(s) 134, 463
CviJI RGCY 3 cut(s) 301, 478, 491
CviKI_1 RGCY 3 cut(s) 301, 478, 491
DdeI CTNAG 1 cut(s) 22
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 8, 302
Eco147I AGGCCT 1 cut(s) 301
EcoT14I CCWWGG 2 cut(s) 8, 302
ErhI CCWWGG 2 cut(s) 8, 302
FaeI CATG 2 cut(s) 137, 466
FatI CATG 2 cut(s) 133, 462
FauNDI CATATG 1 cut(s) 286
FokI GGATG 2 cut(s) 295, 391
FspBI CTAG 1 cut(s) 9
HaeIII GGCC 1 cut(s) 301
HapII CCGG 1 cut(s) 392
Hin1II CATG 2 cut(s) 137, 466
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HinfI GANTC 3 cut(s) 119, 184, 466
HpaII CCGG 1 cut(s) 392
HphI GGTGA 2 cut(s) 221, 406
Hpy166II GTNNAC 1 cut(s) 529
Hpy188I TCNGA 2 cut(s) 220, 587
Hpy188III TCNNGA 3 cut(s) 188, 470, 561
Hpy8I GTNNAC 1 cut(s) 529
HpyAV CCTTC 1 cut(s) 567
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4V TGCA 3 cut(s) 262, 332, 569
HpyF3I CTNAG 1 cut(s) 22
Hsp92II CATG 2 cut(s) 137, 466
Kzo9I GATC 1 cut(s) 83
LpnPI CCDG 4 cut(s) 9, 171, 248, 405
LweI GCATC 3 cut(s) 217, 413, 586
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 249, 394
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 3 cut(s) 68, 71, 550
MflI RGATCY 1 cut(s) 83
MluCI AATT 7 cut(s) 63, 142, 255, 318, 428, 434, 543
MlyI GAGTC 1 cut(s) 460
MnlI CCTC 1 cut(s) 274
MroXI GAANNNNTTC 2 cut(s) 66, 421
MseI TTAA 5 cut(s) 105, 383, 431, 440, 497
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 1 cut(s) 392
NdeI CATATG 1 cut(s) 286
NdeII GATC 1 cut(s) 83
NlaIII CATG 2 cut(s) 137, 466
NmuCI GTSAC 1 cut(s) 394
PceI AGGCCT 1 cut(s) 301
PdmI GAANNNNTTC 2 cut(s) 66, 421
PfeI GAWTC 2 cut(s) 119, 184
PinAI ACCGGT 1 cut(s) 391
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
PsrI GAACNNNNNNTAC 2 cut(s) 147, 179
PsuI RGATCY 1 cut(s) 83
SaqAI TTAA 5 cut(s) 105, 383, 431, 440, 497
Sau3AI GATC 1 cut(s) 83
SchI GAGTC 1 cut(s) 460
SetI ASST 3 cut(s) 28, 160, 493
SfaNI GCATC 3 cut(s) 217, 413, 586
SfcI CTRYAG 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
Sse9I AATT 7 cut(s) 63, 142, 255, 318, 428, 434, 543
SseBI AGGCCT 1 cut(s) 301
SsiI CCGC 2 cut(s) 408, 454
SspI AATATT 1 cut(s) 236
SspMI CTAG 1 cut(s) 9
StuI AGGCCT 1 cut(s) 301
StyI CCWWGG 2 cut(s) 8, 302
TaaI ACNGT 1 cut(s) 400
TasI AATT 7 cut(s) 63, 142, 255, 318, 428, 434, 543
TfiI GAWTC 2 cut(s) 119, 184
Tru1I TTAA 5 cut(s) 105, 383, 431, 440, 497
Tru9I TTAA 5 cut(s) 105, 383, 431, 440, 497
TseFI GTSAC 1 cut(s) 394
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 4 cut(s) 132, 161, 168, 303
XapI RAATTY 2 cut(s) 142, 255
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 2 cut(s) 66, 421
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.