Rmu_sc0010368.1_g000012

Zinc finger MYM-type protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010368.1
Physical Location & Seq
Reverse (-)
50467 .. 51111
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010368.1_g000012.1.cds

Sequence Viewer

Length: 645 bp
atgcaagagcatgttcgacgcattcaaagtcatgagacacactaccattatctcagtcacagaattcaaaatgaaatgatacaaatgttagcaagtgagataaaacaatcaattgttacaagtatcaaagaagtcaaatacttttccattattgtggattgcactcccgatgtaagtcatgaagagcaaatgtctcttgtagtacggtgtgtggatatttcttcaaagcctataatggttgaagagttctggctagaattcttgaaagtagatgatacgttaggtcttgggctttttactgagatttcaaatgcattgagcactcttcaacttgatattgatgatataagaggacaaggatatgacaatggagctaatatgaaaggaaaacacaaaggtgttcaaaagaggcttcttgaagtaaatcctaaggcattctacactccatgtggttgtcatagtctcaatcttgcactttgtgatatggcaaattcttgtcccaaagctatgtctttttttggagtgattcaaaggatatattcattgttttcatcatctacaaagcgatggcaagttttcaaagattttgtggatgtaaaacgtcaccatttaattaaagtggtaccttcgactatatttgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

214

Amino Acids

24.58

Weight (kDa)

7.14

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 622
AccB1I GGYRCC 1 cut(s) 622
AcsI RAATTY 3 cut(s) 63, 257, 490
AdeI CACNNNGTG 1 cut(s) 479
AfaI GTAC 2 cut(s) 204, 624
AleI CACNNNNGTG 1 cut(s) 396
AluBI AGCT 2 cut(s) 374, 506
AluI AGCT 2 cut(s) 374, 506
Alw21I GWGCWC 1 cut(s) 323
Alw26I GTCTC 3 cut(s) 29, 198, 467
ApoI RAATTY 3 cut(s) 63, 257, 490
Asp718I GGTACC 1 cut(s) 622
AsuHPI GGTGA 1 cut(s) 596
AxyI CCTNAGG 1 cut(s) 429
BaeI ACNNNNGTAYC 2 cut(s) 71, 104
BanI GGYRCC 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 323
BccI CCATC 1 cut(s) 561
BcoDI GTCTC 3 cut(s) 29, 198, 467
BfaI CTAG 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 624
Bse21I CCTNAGG 1 cut(s) 429
BseGI GGATG 1 cut(s) 598
BseMII CTCAG 2 cut(s) 67, 291
BshNI GGYRCC 1 cut(s) 622
BsiHKAI GWGCWC 1 cut(s) 323
BslFI GGGAC 1 cut(s) 483
BsmAI GTCTC 3 cut(s) 29, 198, 467
BsmFI GGGAC 1 cut(s) 483
BsmI GAATGC 2 cut(s) 21, 434
Bsp1286I GDGCHC 1 cut(s) 323
BspCNI CTCAG 2 cut(s) 66, 292
BspHI TCATGA 2 cut(s) 31, 178
BspLI GGNNCC 1 cut(s) 624
BspQI GCTCTTC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 622
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 3 cut(s) 177, 237, 330
BstDEI CTNAG 3 cut(s) 53, 300, 429
BstF5I GGATG 1 cut(s) 598
BstMAI GTCTC 3 cut(s) 29, 198, 467
BstNSI RCATGY 1 cut(s) 14
BstXI CCANNNNNNTGG 1 cut(s) 154
Bsu36I CCTNAGG 1 cut(s) 429
BtgZI GCGATG 1 cut(s) 580
BtsCI GGATG 1 cut(s) 598
CciI TCATGA 2 cut(s) 31, 178
CseI GACGC 1 cut(s) 27
Csp6I GTAC 2 cut(s) 203, 623
CviAII CATG 4 cut(s) 11, 32, 179, 447
CviJI RGCY 6 cut(s) 229, 253, 292, 374, 412, 506
CviKI_1 RGCY 6 cut(s) 229, 253, 292, 374, 412, 506
CviQI GTAC 2 cut(s) 203, 623
DdeI CTNAG 3 cut(s) 53, 300, 429
DraIII CACNNNGTG 1 cut(s) 479
Eam1104I CTCTTC 3 cut(s) 177, 237, 330
EarI CTCTTC 3 cut(s) 177, 237, 330
Eco81I CCTNAGG 1 cut(s) 429
EcoRI GAATTC 2 cut(s) 63, 257
EcoT22I ATGCAT 1 cut(s) 316
FaeI CATG 4 cut(s) 14, 35, 182, 450
FaqI GGGAC 1 cut(s) 483
FatI CATG 4 cut(s) 10, 31, 178, 446
FokI GGATG 1 cut(s) 605
FspBI CTAG 1 cut(s) 254
HgaI GACGC 1 cut(s) 27
Hin1II CATG 4 cut(s) 14, 35, 182, 450
HinfI GANTC 1 cut(s) 526
HphI GGTGA 1 cut(s) 596
Hpy188III TCNNGA 5 cut(s) 32, 167, 179, 262, 416
Hpy99I CGWCG 1 cut(s) 21
HpyAV CCTTC 1 cut(s) 636
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 2 cut(s) 278, 601
HpyCH4V TGCA 4 cut(s) 4, 162, 314, 473
HpyF3I CTNAG 3 cut(s) 53, 300, 429
HpySE526I ACGT 2 cut(s) 278, 601
Hsp92II CATG 4 cut(s) 14, 35, 182, 450
KpnI GGTACC 1 cut(s) 626
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 371
LpnPI CCDG 1 cut(s) 235
MaeI CTAG 1 cut(s) 254
MaeII ACGT 2 cut(s) 278, 601
MaeIII GTNAC 3 cut(s) 56, 115, 602
MboII GAAGA 4 cut(s) 194, 213, 254, 317
MfeI CAATTG 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 5 cut(s) 63, 111, 257, 490, 612
MnlI CCTC 2 cut(s) 344, 402
Mph1103I ATGCAT 1 cut(s) 316
MseI TTAA 2 cut(s) 611, 615
MslI CAYNNNNRTG 2 cut(s) 152, 396
MunI CAATTG 1 cut(s) 111
Mva1269I GAATGC 2 cut(s) 21, 434
NlaIII CATG 4 cut(s) 14, 35, 182, 450
NlaIV GGNNCC 1 cut(s) 624
NmuCI GTSAC 2 cut(s) 56, 602
NsiI ATGCAT 1 cut(s) 316
NspI RCATGY 1 cut(s) 14
OliI CACNNNNGTG 1 cut(s) 396
PacI TTAATTAA 1 cut(s) 615
PagI TCATGA 2 cut(s) 31, 178
PciSI GCTCTTC 1 cut(s) 177
PctI GAATGC 2 cut(s) 21, 434
PfeI GAWTC 1 cut(s) 526
PspN4I GGNNCC 1 cut(s) 624
RsaI GTAC 2 cut(s) 204, 624
RsaNI GTAC 2 cut(s) 203, 623
RseI CAYNNNNRTG 2 cut(s) 152, 396
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 611, 615
SduI GDGCHC 1 cut(s) 323
SetI ASST 7 cut(s) 281, 286, 376, 400, 508, 604, 628
SmiMI CAYNNNNRTG 2 cut(s) 152, 396
Sse9I AATT 5 cut(s) 63, 111, 257, 490, 612
SspMI CTAG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 2 cut(s) 281, 604
TaqI TCGA 2 cut(s) 16, 629
TasI AATT 5 cut(s) 63, 111, 257, 490, 612
TfiI GAWTC 1 cut(s) 526
Tru1I TTAA 2 cut(s) 611, 615
Tru9I TTAA 2 cut(s) 611, 615
TseFI GTSAC 2 cut(s) 56, 602
Tsp45I GTSAC 2 cut(s) 56, 602
TspDTI ATGAA 5 cut(s) 87, 195, 395, 531, 540
XapI RAATTY 3 cut(s) 63, 257, 490
XceI RCATGY 1 cut(s) 14
XspI CTAG 1 cut(s) 254
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.