FvH4_2g29241

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000215
Physical Location & Seq
Forward (+)
22716122 .. 22718098
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29241.t1

Sequence Viewer

Length: 1041 bp
ATGGTGAATGATCATGATGTTAAAGAGGCAGAGATTGAGAAAAATAATGATCATGATGTTGAAGAGGAAGAGATTGAGGAAAATAGTGATCATGATGTTGAAGAGGCAGAGATTGAGGAAAATATTGAAGATGTTCACACTATAGAGCCAAATCAGTCAGTAGGGAAAAACAATGATATTATCAATGAAGAAAGTCATACTGCAAATTCAAGAGAAGAAGTTCCGTTTGACATGGATGATCCAGGGAATTGGAATAAAACATACCAAAATATTACAGAATTTTTGGTTGAAAGAGGCACCAAAAGAGTCAATAATGTGATCTTTCCGAAAGATACATGTGAGAGTGAATTGAAGACTCTTGAACTTGATGCAAGTGATATAAGAGGACAAGGGTATGACAATGGATCCAACATGAAAGCTTCTACAAAAAGATGGCAGGTTTTTAAAGAGCATGTGACAGTTCTCACTTTAAAACCATTATCAGAAACTTGTTGGAAAAGCCGTGTGGAGAGTATTAAAGCAATAAGGTATCAAACTCCAGAAATAAGACAAGCTTTGATGCATATTGTGAACAACAAAAAAGAAGATGCCAAGGCAAAAAGTGATGCTGATGCTGATGCTTTAGCAAAATATAATCTTCAGAATTTTGAGTTCTTGTTGGGAATGTTTATATGGTATGAGTTGTTATATGCGGTTAACAATGTCAGCAAAGTTCTGCAAACTGAAGATACGCATATTGATATAGCCATCAAAGAATTGGAACGTCTTCTTTCTTTGCTTCAAAAGTTCAGAGAAACTGGGTTTGAGGAGTCTTTGATTGAAGCTAAAAAGATTGCAAGTGAGATGGAGATTGAACCGATATTCATGGAAAAACAGACAATTCACACAAAAAGACAATTTGATGAAAGCTCTACTGAAGCAGTGATACAATCAGCTACAGAATCATTCAAAACCAACTACTTTCTCTACATAGTTGATCAAGCTATTTCTTCATTCAAAACCAGGTTAGAACTATATACATTATATTTAATTTTTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

347

Amino Acids

40.18

Weight (kDa)

4.66

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 427
AccB1I GGYRCC 1 cut(s) 296
AciI CCGC 1 cut(s) 692
AclWI GGATC 3 cut(s) 233, 399, 412
AcsI RAATTY 3 cut(s) 205, 278, 643
AcuI CTGAAG 3 cut(s) 623, 744, 936
AflIII ACRYGT 1 cut(s) 335
AjnI CCWGG 2 cut(s) 241, 1001
AluBI AGCT 6 cut(s) 419, 554, 824, 909, 935, 983
AluI AGCT 6 cut(s) 419, 554, 824, 909, 935, 983
AlwI GGATC 3 cut(s) 233, 399, 412
ApoI RAATTY 3 cut(s) 205, 278, 643
Asp700I GAANNNNTTC 3 cut(s) 132, 219, 765
AsuHPI GGTGA 1 cut(s) 16
BamHI GGATCC 1 cut(s) 404
BanI GGYRCC 1 cut(s) 296
BarI GAAGNNNNNNTAC 2 cut(s) 909, 941
BbsI GAAGAC 2 cut(s) 359, 758
BccI CCATC 3 cut(s) 426, 755, 838
BceAI ACGGC 1 cut(s) 486
BciT130I CCWGG 2 cut(s) 243, 1003
BclI TGATCA 4 cut(s) 10, 49, 88, 976
BfmI CTRYAG 2 cut(s) 141, 936
BfuAI ACCTGC 1 cut(s) 427
Bme1390I CCNGG 2 cut(s) 243, 1003
BmiI GGNNCC 2 cut(s) 298, 406
BmrFI CCNGG 2 cut(s) 243, 1003
BmrI ACTGGG 1 cut(s) 807
BmsI GCATC 6 cut(s) 358, 549, 577, 595, 601, 607
BmuI ACTGGG 1 cut(s) 807
BpiI GAAGAC 2 cut(s) 359, 758
BpmI CTGGAG 1 cut(s) 522
BsaJI CCNNGG 2 cut(s) 242, 591
Bse1I ACTGG 1 cut(s) 802
BseBI CCWGG 2 cut(s) 243, 1003
BseDI CCNNGG 2 cut(s) 242, 591
BseGI GGATG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 802
BseRI GAGGAG 1 cut(s) 821
BshNI GGYRCC 1 cut(s) 296
Bsp143I GATC 7 cut(s) 10, 49, 88, 238, 318, 404, 976
BspACI CCGC 1 cut(s) 692
BspHI TCATGA 3 cut(s) 13, 52, 91
BspLI GGNNCC 2 cut(s) 298, 406
BspMI ACCTGC 1 cut(s) 427
BspPI GGATC 3 cut(s) 233, 399, 412
BspT107I GGYRCC 1 cut(s) 296
BsrI ACTGG 1 cut(s) 802
BssECI CCNNGG 2 cut(s) 242, 591
BssMI GATC 7 cut(s) 10, 49, 88, 238, 318, 404, 976
BssT1I CCWWGG 1 cut(s) 591
Bst2UI CCWGG 2 cut(s) 243, 1003
Bst4CI ACNGT 1 cut(s) 460
Bst6I CTCTTC 3 cut(s) 57, 63, 96
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 7 cut(s) 13, 52, 91, 241, 321, 407, 979
BstMBI GATC 7 cut(s) 10, 49, 88, 238, 318, 404, 976
BstNI CCWGG 2 cut(s) 243, 1003
BstNSI RCATGY 2 cut(s) 339, 455
BstSCI CCNGG 2 cut(s) 241, 1001
BstSFI CTRYAG 2 cut(s) 141, 936
BstV2I GAAGAC 2 cut(s) 359, 758
BstX2I RGATCY 1 cut(s) 404
BstXI CCANNNNNNTGG 1 cut(s) 249
BstYI RGATCY 1 cut(s) 404
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 927
BtsIMutI CAGTG 1 cut(s) 927
BveI ACCTGC 1 cut(s) 427
CciI TCATGA 3 cut(s) 13, 52, 91
CsiI ACCWGGT 1 cut(s) 1001
CviAII CATG 8 cut(s) 14, 53, 92, 232, 336, 412, 452, 865
CviJI RGCY 9 cut(s) 148, 419, 501, 554, 746, 824, 909, 935, 983
CviKI_1 RGCY 9 cut(s) 148, 419, 501, 554, 746, 824, 909, 935, 983
DpnI GATC 7 cut(s) 12, 51, 90, 240, 320, 406, 978
DpnII GATC 7 cut(s) 10, 49, 88, 238, 318, 404, 976
DraI TTTAAA 2 cut(s) 445, 471
Eam1104I CTCTTC 3 cut(s) 57, 63, 96
EarI CTCTTC 3 cut(s) 57, 63, 96
Eco130I CCWWGG 1 cut(s) 591
Eco57I CTGAAG 3 cut(s) 623, 744, 936
EcoRII CCWGG 2 cut(s) 241, 1001
EcoT14I CCWWGG 1 cut(s) 591
EcoT22I ATGCAT 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 591
FaeI CATG 8 cut(s) 17, 56, 95, 235, 339, 415, 455, 868
FalI AAGNNNNNCTT 2 cut(s) 538, 570
FatI CATG 8 cut(s) 13, 52, 91, 231, 335, 411, 451, 864
FbaI TGATCA 4 cut(s) 10, 49, 88, 976
FokI GGATG 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 522
Hin1II CATG 8 cut(s) 17, 56, 95, 235, 339, 415, 455, 868
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HindIII AAGCTT 2 cut(s) 417, 552
HinfI GANTC 4 cut(s) 306, 355, 809, 941
HpaI GTTAAC 1 cut(s) 697
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 3 cut(s) 136, 571, 697
Hpy188I TCNGA 4 cut(s) 327, 484, 642, 791
Hpy188III TCNNGA 6 cut(s) 14, 53, 92, 210, 359, 539
Hpy8I GTNNAC 3 cut(s) 136, 571, 697
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4IV ACGT 1 cut(s) 763
HpyCH4V TGCA 5 cut(s) 203, 371, 562, 718, 836
HpySE526I ACGT 1 cut(s) 763
Hsp92II CATG 8 cut(s) 17, 56, 95, 235, 339, 415, 455, 868
Ksp22I TGATCA 4 cut(s) 10, 49, 88, 976
KspAI GTTAAC 1 cut(s) 697
Kzo9I GATC 7 cut(s) 10, 49, 88, 238, 318, 404, 976
LpnPI CCDG 7 cut(s) 228, 255, 422, 552, 783, 988, 1015
LweI GCATC 6 cut(s) 358, 549, 577, 595, 601, 607
MabI ACCWGGT 1 cut(s) 1001
MaeII ACGT 1 cut(s) 763
MaeIII GTNAC 1 cut(s) 454
MalI GATC 7 cut(s) 12, 51, 90, 240, 320, 406, 978
MboI GATC 7 cut(s) 10, 49, 88, 238, 318, 404, 976
MflI RGATCY 1 cut(s) 404
MluCI AATT 9 cut(s) 205, 247, 278, 347, 643, 755, 879, 896, 1029
MlyI GAGTC 3 cut(s) 315, 349, 818
MmeI TCCRAC 2 cut(s) 432, 473
MnlI CCTC 8 cut(s) 19, 58, 70, 97, 109, 287, 377, 799
Mph1103I ATGCAT 1 cut(s) 564
MroXI GAANNNNTTC 3 cut(s) 132, 219, 765
MseI TTAA 7 cut(s) 21, 444, 470, 516, 696, 1028, 1039
MspR9I CCNGG 2 cut(s) 243, 1003
MvaI CCWGG 2 cut(s) 243, 1003
NdeII GATC 7 cut(s) 10, 49, 88, 238, 318, 404, 976
NlaIII CATG 8 cut(s) 17, 56, 95, 235, 339, 415, 455, 868
NlaIV GGNNCC 2 cut(s) 298, 406
NmuCI GTSAC 1 cut(s) 454
NsiI ATGCAT 1 cut(s) 564
NspI RCATGY 2 cut(s) 339, 455
PagI TCATGA 3 cut(s) 13, 52, 91
PciI ACATGT 1 cut(s) 335
PdmI GAANNNNTTC 3 cut(s) 132, 219, 765
PfeI GAWTC 1 cut(s) 941
PleI GAGTC 3 cut(s) 314, 349, 817
PpsI GAGTC 3 cut(s) 314, 349, 817
PscI ACATGT 1 cut(s) 335
Psp6I CCWGG 2 cut(s) 241, 1001
PspGI CCWGG 2 cut(s) 241, 1001
PspN4I GGNNCC 2 cut(s) 298, 406
PsuI RGATCY 1 cut(s) 404
SaqAI TTAA 7 cut(s) 21, 444, 470, 516, 696, 1028, 1039
Sau3AI GATC 7 cut(s) 10, 49, 88, 238, 318, 404, 976
SchI GAGTC 3 cut(s) 315, 349, 818
ScrFI CCNGG 2 cut(s) 243, 1003
SexAI ACCWGGT 1 cut(s) 1001
SfaNI GCATC 6 cut(s) 358, 549, 577, 595, 601, 607
SfcI CTRYAG 2 cut(s) 141, 936
Sse9I AATT 9 cut(s) 205, 247, 278, 347, 643, 755, 879, 896, 1029
SsiI CCGC 1 cut(s) 692
SspI AATATT 2 cut(s) 124, 271
StyD4I CCNGG 2 cut(s) 241, 1001
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 1 cut(s) 460
TaiI ACGT 1 cut(s) 766
TasI AATT 9 cut(s) 205, 247, 278, 347, 643, 755, 879, 896, 1029
TfiI GAWTC 1 cut(s) 941
Tru1I TTAA 7 cut(s) 21, 444, 470, 516, 696, 1028, 1039
Tru9I TTAA 7 cut(s) 21, 444, 470, 516, 696, 1028, 1039
TscAI CASTG 1 cut(s) 927
TseFI GTSAC 1 cut(s) 454
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 5 cut(s) 201, 428, 853, 918, 981
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 927
XapI RAATTY 3 cut(s) 205, 278, 643
XceI RCATGY 2 cut(s) 339, 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 754
XmnI GAANNNNTTC 3 cut(s) 132, 219, 765
Zsp2I ATGCAT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.