FvH4_4g14421

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000215
Physical Location & Seq
Forward (+)
18057268 .. 18059292
2025 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14421.t1

Sequence Viewer

Length: 1152 bp
ATGGCTCCAATTAGGAAGTATCCTTCAGGGGCTAAAAAAAGAAAACAGAAGAAAAAGAGAGATGCATTGGCTAAAGTTCAATCTGGATCTATCAATAAGTACTTCAAGCCAAATAAGAAACAAGAACAGACATGTACTGATAAGAATGTGCATGAGAATGAGAACGAGAACGAGAATGCAGATGTTATTGGTAATGGGGAAGAACCAAATCTCAGAGTGAATGAGGAAGAAAGAATTATTACTGAAGATGATCAACAAGATGCAGATAATAGTGGTAGCATAGAAGAACCAGATCTCATAATGAATGAGGAAGAAATAAACATTGCTGAAGATGATCAACAAGATGCAGATTATAGTGGTAGTATGGAAGAACGAGATCTCACAATGAATGAGGAAGAAATAATTGTTGCCGAACATGATCAACAAGATTCAACTTCAACATTTGATTTACCATTTGATGTTGATGATCTAGGAAATTGGGAGAAGATAAAACAAAATGTCAGAGATTTTTTAGTCCAAAGAGGACAAGGATATGACAACGGATCTAACATGAGAGGAAAACACAAAGGTGTGCAGAAGAGACTCCTTGAGGTAAATCCTAGAGCATTTTATACGCCTTGTGGTTATCACAGTCTAAATCTTGCTATTTGTGATATGGCTAATTGTACTCCTAAAGCTGATTATTTTTTTGGAGTGGTACAACGGATATATTCATTCTTCTCATCTTCTACAAAGCGATGGCAAGGTTTCAGGGATCATGTGGAAGGGCTCACTCTTAAACCATTGTCTGAAACAAGATGGGAGAGTCGTGTTGACAGTATAAAAACATTTAGATTCCAAGCTCCCAAAATGAGAGAGGCTTTAGCTTACTTGGGAAAAAATGGTGTTGATTCCAAAACAAGGTGTGAAGCCGAATGCATGGCAACATATGAAATGGGGAATTTTGAGTTCTTGTTCGGGATGGTTATTTGGTATGATTTATTACATGCTATCAATATTGTCAGTAAAGTTCTGCAAACCGAAGACATGCATATTGATGTTGCCATTGAAGAATTGGAGAAGCTTATTTCATTTATCCAGAAGTACAGAGAAACTGGATTTAATGATGCCTTGATCATAGCTAAAGAAATTGCAAGTGAGATGAAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

384

Amino Acids

44.1

Weight (kDa)

4.93

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 94, 550, 762
AcsI RAATTY 1 cut(s) 940
AcuI CTGAAG 3 cut(s) 9, 264, 348
AfaI GTAC 5 cut(s) 101, 136, 667, 699, 1085
AfiI CCNNNNNNNGG 1 cut(s) 900
AflIII ACRYGT 1 cut(s) 131
AgsI TTSAA 5 cut(s) 80, 106, 432, 438, 1049
AleI CACNNNNGTG 1 cut(s) 567
AluBI AGCT 5 cut(s) 677, 842, 866, 1063, 1121
AluI AGCT 5 cut(s) 677, 842, 866, 1063, 1121
Alw26I GTCTC 1 cut(s) 574
AlwI GGATC 3 cut(s) 94, 550, 762
ApoI RAATTY 1 cut(s) 940
BanII GRGCYC 1 cut(s) 771
BbsI GAAGAC 1 cut(s) 1029
BccI CCATC 3 cut(s) 732, 792, 955
BciVI GTATCC 1 cut(s) 30
BclI TGATCA 4 cut(s) 250, 334, 418, 1113
BcoDI GTCTC 1 cut(s) 574
BfaI CTAG 2 cut(s) 470, 600
BfuI GTATCC 1 cut(s) 30
BglII AGATCT 2 cut(s) 292, 376
BmcAI AGTACT 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 4 cut(s) 52, 250, 334, 1096
BpiI GAAGAC 1 cut(s) 1029
BpuEI CTTGAG 1 cut(s) 608
Bsc4I CCNNNNNNNGG 1 cut(s) 900
Bse1I ACTGG 1 cut(s) 1099
Bse3DI GCAATG 1 cut(s) 321
BseGI GGATG 1 cut(s) 966
BseLI CCNNNNNNNGG 1 cut(s) 900
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 1099
BsgI GTGCAG 1 cut(s) 593
BslI CCNNNNNNNGG 1 cut(s) 900
BsmAI GTCTC 1 cut(s) 574
BsmI GAATGC 2 cut(s) 181, 920
Bsp1286I GDGCHC 1 cut(s) 771
BspCNI CTCAG 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 3 cut(s) 94, 550, 762
BsrDI GCAATG 1 cut(s) 321
BsrI ACTGG 1 cut(s) 1099
Bst4CI ACNGT 2 cut(s) 632, 818
Bst6I CTCTTC 1 cut(s) 572
BstDEI CTNAG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 966
BstMAI GTCTC 1 cut(s) 574
BstNSI RCATGY 3 cut(s) 135, 989, 1030
BstV2I GAAGAC 1 cut(s) 1029
BstX2I RGATCY 4 cut(s) 86, 292, 376, 542
BstYI RGATCY 4 cut(s) 86, 292, 376, 542
BsuI GTATCC 1 cut(s) 30
BtgZI GCGATG 1 cut(s) 751
BtsCI GGATG 1 cut(s) 966
Csp6I GTAC 5 cut(s) 100, 135, 666, 698, 1084
CviAII CATG 8 cut(s) 132, 152, 416, 550, 758, 919, 986, 1027
CviQI GTAC 5 cut(s) 100, 135, 666, 698, 1084
DdeI CTNAG 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Eco24I GRGCYC 1 cut(s) 771
Eco57I CTGAAG 3 cut(s) 9, 264, 348
EcoT22I ATGCAT 3 cut(s) 67, 920, 1032
EcoT38I GRGCYC 1 cut(s) 771
FaeI CATG 8 cut(s) 135, 155, 419, 553, 761, 922, 989, 1030
FatI CATG 8 cut(s) 131, 151, 415, 549, 757, 918, 985, 1026
FauNDI CATATG 1 cut(s) 928
FbaI TGATCA 4 cut(s) 250, 334, 418, 1113
FokI GGATG 1 cut(s) 973
FriOI GRGCYC 1 cut(s) 771
FspBI CTAG 2 cut(s) 470, 600
Hin1II CATG 8 cut(s) 135, 155, 419, 553, 761, 922, 989, 1030
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HindIII AAGCTT 1 cut(s) 1061
HinfI GANTC 5 cut(s) 428, 582, 805, 834, 890
Hpy166II GTNNAC 1 cut(s) 814
Hpy188I TCNGA 3 cut(s) 215, 503, 790
Hpy188III TCNNGA 3 cut(s) 84, 958, 1078
Hpy8I GTNNAC 1 cut(s) 814
HpyAV CCTTC 2 cut(s) 33, 758
HpyCH4III ACNGT 2 cut(s) 632, 818
HpyF3I CTNAG 1 cut(s) 212
Hsp92II CATG 8 cut(s) 135, 155, 419, 553, 761, 922, 989, 1030
Ksp22I TGATCA 4 cut(s) 250, 334, 418, 1113
LmnI GCTCC 2 cut(s) 10, 847
LpnPI CCDG 6 cut(s) 12, 69, 303, 736, 1080, 1091
LweI GCATC 4 cut(s) 52, 250, 334, 1096
MaeI CTAG 2 cut(s) 470, 600
MflI RGATCY 4 cut(s) 86, 292, 376, 542
MhlI GDGCHC 1 cut(s) 771
MluCI AATT 8 cut(s) 9, 234, 402, 475, 661, 940, 1052, 1128
MlyI GAGTC 2 cut(s) 576, 814
MnlI CCTC 7 cut(s) 217, 301, 385, 515, 548, 583, 850
Mph1103I ATGCAT 3 cut(s) 67, 920, 1032
MseI TTAA 3 cut(s) 777, 1101, 1150
MslI CAYNNNNRTG 3 cut(s) 156, 567, 1035
Mva1269I GAATGC 2 cut(s) 181, 920
NdeI CATATG 1 cut(s) 928
NlaIII CATG 8 cut(s) 135, 155, 419, 553, 761, 922, 989, 1030
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 3 cut(s) 67, 920, 1032
NspI RCATGY 3 cut(s) 135, 989, 1030
OliI CACNNNNGTG 1 cut(s) 567
PciI ACATGT 1 cut(s) 131
PctI GAATGC 2 cut(s) 181, 920
PfeI GAWTC 3 cut(s) 428, 834, 890
PleI GAGTC 2 cut(s) 576, 813
PpsI GAGTC 2 cut(s) 576, 813
PscI ACATGT 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 4 cut(s) 86, 292, 376, 542
RsaI GTAC 5 cut(s) 101, 136, 667, 699, 1085
RsaNI GTAC 5 cut(s) 100, 135, 666, 698, 1084
RseI CAYNNNNRTG 3 cut(s) 156, 567, 1035
SaqAI TTAA 3 cut(s) 777, 1101, 1150
ScaI AGTACT 1 cut(s) 101
SchI GAGTC 2 cut(s) 576, 814
SduI GDGCHC 1 cut(s) 771
SetI ASST 9 cut(s) 571, 594, 679, 748, 844, 868, 905, 1065, 1123
SfaNI GCATC 4 cut(s) 52, 250, 334, 1096
SmiMI CAYNNNNRTG 3 cut(s) 156, 567, 1035
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
Sse9I AATT 8 cut(s) 9, 234, 402, 475, 661, 940, 1052, 1128
SspI AATATT 1 cut(s) 997
SspMI CTAG 2 cut(s) 470, 600
TaaI ACNGT 2 cut(s) 632, 818
TasI AATT 8 cut(s) 9, 234, 402, 475, 661, 940, 1052, 1128
TatI WGTACW 4 cut(s) 99, 134, 665, 1083
TfiI GAWTC 3 cut(s) 428, 834, 890
Tru1I TTAA 3 cut(s) 777, 1101, 1150
Tru9I TTAA 3 cut(s) 777, 1101, 1150
TspDTI ATGAA 5 cut(s) 317, 401, 702, 945, 1059
TspGWI ACGGA 2 cut(s) 555, 718
XapI RAATTY 1 cut(s) 940
XceI RCATGY 3 cut(s) 135, 989, 1030
XcmI CCANNNNNNNNNTGG 1 cut(s) 1051
XspI CTAG 2 cut(s) 470, 600
ZrmI AGTACT 1 cut(s) 101
Zsp2I ATGCAT 3 cut(s) 67, 920, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.