Rw3G019510

Domain of unknown function (DUF4371)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000215
Physical Location & Seq
Reverse (-)
22273004 .. 22276648
3645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G019510.1

Sequence Viewer

Length: 1653 bp
ATGCGAGGTCAGTTACCGAATGATGGGTACAATGATTGGGGTCACCTTAGTAAAAGACTTAAGGAGCATGAAATGAGCACTGATCATCTCATTAATGCAAATACTTGGACTGATTTGCGTCTTAGATTGCAGAGGCATGAAACCATTGATAAAGCTTTTCAAGACCAGATTAGGAAAGAGAAAGAACACTGGAGGAATGTGCTGAAAAGAATAATTGCAATTGTCAAATTTCTTGCTAAAAATAACTTAGCTTTCCGTGGAACTAATGAGAGGCTTTATGAACCTAATAATGGACACTTTTTGGGTCTAGTTGAAATGGTGGCAGAATGTGAAGAAGTGATGGAGGAGCATTGTAGACGCATAAATAGTTCTGAAATTCATCATCACTATCTTGGTCATAACATTCAGAATGAGTTGCTGCATATGATAGCTATTGAAATCAAAGCTGAAATCATAAAAAAAATTAAAGATGCTGAATATTTCTCTGTTATTCTTGATTGCACACCAGATATTAGTCACCAAGAGCAGATGTCATTGATACTTAGATGTGTGAATGCTTCAAAGAGTCCAATACAAATTGAAGAGTTCTTTGTGGAGTTTTTAAATGTACATGACACTTCTGGTCAGGGACTATTTGAAGAGCTGCAGGCTGTGGTACAATCATTGGATCTTGATATTAACAATGTGAGGGGACAAGGATATGACAACGGGTCAAATATGAAAGGTTCTACAAAGCGATGGCAGGTTTTGAAGGACAACCTAAAAGGATTCACTCTCAAATCATTATCCACTACGCGTTGGGAGAGTCGTATTGAAAGTGTTAAGCCTCTACGATTCAACGCCGTTGAAATAAGAGAAGCATTACTTCAATTGGCAGAAATTGACAAGGATCCCAAAATTAAAAGTGGTGCAAAGTCAATAGCAACTAATGATCTGGGAGACTTTGAGTTTTTGCTAAGCATGGTGATTTGGTATGAAATTTTGTTTGCTTTTAATAAGGTTAGCAAAGTGCTGCAGTCTCATGATATGCAAATTAGTGTTGCTATAGCTGAAGTAAAAGGTCTAATTGCTTGGCTTGATAAGTTTAGAGAAAATGGCTTCACAGATGCAATAATTACTGCTAAAGAAATTGCTGTTGCATTAGATGTTGATCCTGTTTTTCCTGAAAAGCGTCAAATTCAAAGAAAAAGATTTTTTGATGAAAGCGGCAGTGAGCCATCTCCATCATCTTCAAGTGAGGAATCTTTTAGACTACATTATTTCTTATATATTATAGATCAAGCTAAGGGGTCATTAAATAGAAGGTTTGAACAATACCAACGTTATGATGATATCTTTGGATTTTTATTCACTTCTGAAACTTTGAATTCCTTGAATGATAATGATTTGAAAGCTGCTTGTATTCATCTTGAGACTGTTTTGAGATATGGAGAGAGTTCAGATGTTGATGGGGAAGACATGTTTAGAGAGCTAAAACTCTTAAGGGAGATATTACCCAAACAGAAGATGACAGCTAGTGATATATTGAATTTCTTACTGGAAAGGAATAGCTGCCCAGTTGTTAGACTTGCATATCGAATATTGTTAACTGTGCCTGTTACTGTTGCTTCAGCTGAGAGGAGTTTTTCCAAGTTAAAAGAAGAAGGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

550

Amino Acids

63.55

Weight (kDa)

5.86

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 42 - 243 1.1e-20 Domain of unknown function (DUF4371)
Dimer_Tnp_hAT PF05699 499 - 546 1.5e-06 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 733
AccI GTMKAC 1 cut(s) 355
AccII CGCG 1 cut(s) 796
AciI CCGC 1 cut(s) 1206
AclI AACGTT 1 cut(s) 1321
AclWI GGATC 4 cut(s) 675, 884, 897, 1145
AcsI RAATTY 6 cut(s) 227, 375, 978, 1176, 1366, 1528
AcuI CTGAAG 2 cut(s) 1071, 1593
AfaI GTAC 3 cut(s) 29, 609, 657
AfiI CCNNNNNNNGG 2 cut(s) 23, 290
AflII CTTAAG 2 cut(s) 59, 1480
AflIII ACRYGT 2 cut(s) 794, 1458
AhdI GACNNNNNGTC 1 cut(s) 709
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 3 cut(s) 933, 1023, 1406
AlwI GGATC 4 cut(s) 675, 884, 897, 1145
ApeKI GCWGC 5 cut(s) 418, 643, 1012, 1394, 1551
ApoI RAATTY 6 cut(s) 227, 375, 978, 1176, 1366, 1528
AseI ATTAAT 1 cut(s) 93
AsuHPI GGTGA 3 cut(s) 35, 509, 976
BamHI GGATCC 1 cut(s) 889
BbsI GAAGAC 1 cut(s) 1461
Bbv12I GWGCWC 1 cut(s) 80
BbvI GCAGC 5 cut(s) 405, 630, 999, 1381, 1538
BccI CCATC 6 cut(s) 17, 334, 732, 1225, 1231, 1442
BceAI ACGGC 1 cut(s) 827
BclI TGATCA 1 cut(s) 82
BcoDI GTCTC 3 cut(s) 933, 1023, 1406
BfaI CTAG 2 cut(s) 308, 1515
BfmI CTRYAG 3 cut(s) 644, 1013, 1044
BfrI CTTAAG 2 cut(s) 59, 1480
BfuAI ACCTGC 1 cut(s) 733
BisI GCNGC 6 cut(s) 419, 644, 1013, 1207, 1395, 1552
BlpI GCTNAGC 1 cut(s) 956
BlsI GCNGC 6 cut(s) 420, 645, 1014, 1208, 1396, 1553
BmeRI GACNNNNNGTC 1 cut(s) 709
BmiI GGNNCC 1 cut(s) 891
BmrI ACTGGG 1 cut(s) 1550
BmsI GCATC 2 cut(s) 460, 1096
BmuI ACTGGG 1 cut(s) 1550
BpiI GAAGAC 1 cut(s) 1461
BpmI CTGGAG 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 1284
Bpu1102I GCTNAGC 1 cut(s) 956
BpuEI CTTGAG 1 cut(s) 1430
BsaBI GATNNNNATC 1 cut(s) 1149
BsaJI CCNNGG 1 cut(s) 256
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 290
Bse1I ACTGG 3 cut(s) 194, 1542, 1556
Bse8I GATNNNNATC 1 cut(s) 1149
BseDI CCNNGG 1 cut(s) 256
BseJI GATNNNNATC 1 cut(s) 1149
BseLI CCNNNNNNNGG 2 cut(s) 23, 290
BseMII CTCAG 1 cut(s) 1605
BseNI ACTGG 3 cut(s) 194, 1542, 1556
BseRI GAGGAG 2 cut(s) 359, 1633
BseXI GCAGC 5 cut(s) 405, 630, 999, 1381, 1538
Bsh1236I CGCG 1 cut(s) 796
BsiHKAI GWGCWC 1 cut(s) 80
BslFI GGGAC 2 cut(s) 642, 705
BslI CCNNNNNNNGG 2 cut(s) 23, 290
BsmAI GTCTC 3 cut(s) 933, 1023, 1406
BsmFI GGGAC 2 cut(s) 642, 705
BsmI GAATGC 1 cut(s) 559
Bsp1286I GDGCHC 1 cut(s) 80
Bsp1407I TGTACA 1 cut(s) 607
Bsp143I GATC 6 cut(s) 82, 667, 889, 931, 1150, 1276
Bsp1720I GCTNAGC 1 cut(s) 956
BspACI CCGC 1 cut(s) 1206
BspCNI CTCAG 1 cut(s) 1606
BspFNI CGCG 1 cut(s) 796
BspHI TCATGA 1 cut(s) 1021
BspLI GGNNCC 1 cut(s) 891
BspMAI CTGCAG 2 cut(s) 648, 1017
BspMI ACCTGC 1 cut(s) 733
BspPI GGATC 4 cut(s) 675, 884, 897, 1145
BspQI GCTCTTC 1 cut(s) 633
BspTI CTTAAG 2 cut(s) 59, 1480
BsrGI TGTACA 1 cut(s) 607
BsrI ACTGG 3 cut(s) 194, 1542, 1556
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 6 cut(s) 82, 667, 889, 931, 1150, 1276
Bst4CI ACNGT 3 cut(s) 1417, 1591, 1603
Bst6I CTCTTC 2 cut(s) 576, 633
BstAFI CTTAAG 2 cut(s) 59, 1480
BstAUI TGTACA 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 648
BstDEI CTNAG 7 cut(s) 47, 122, 247, 542, 956, 1284, 1614
BstDSI CCRYGG 1 cut(s) 256
BstEII GGTNACC 1 cut(s) 41
BstFNI CGCG 1 cut(s) 796
BstKTI GATC 6 cut(s) 85, 670, 892, 934, 1153, 1279
BstMAI GTCTC 3 cut(s) 933, 1023, 1406
BstMBI GATC 6 cut(s) 82, 667, 889, 931, 1150, 1276
BstNSI RCATGY 1 cut(s) 1462
BstPI GGTNACC 1 cut(s) 41
BstSFI CTRYAG 3 cut(s) 644, 1013, 1044
BstUI CGCG 1 cut(s) 796
BstV1I GCAGC 5 cut(s) 405, 630, 999, 1381, 1538
BstV2I GAAGAC 1 cut(s) 1461
BstX2I RGATCY 2 cut(s) 667, 889
BstYI RGATCY 2 cut(s) 667, 889
BtgI CCRYGG 1 cut(s) 256
BtgZI GCGATG 1 cut(s) 751
BtsI GCAGTG 1 cut(s) 1216
BtsIMutI CAGTG 3 cut(s) 78, 187, 1216
BveI ACCTGC 1 cut(s) 733
Cac8I GCNNGC 1 cut(s) 648
CciI TCATGA 1 cut(s) 1021
CseI GACGC 3 cut(s) 107, 366, 1160
Csp6I GTAC 3 cut(s) 28, 608, 656
CviAII CATG 6 cut(s) 68, 137, 611, 961, 1022, 1459
CviQI GTAC 3 cut(s) 28, 608, 656
DdeI CTNAG 7 cut(s) 47, 122, 247, 542, 956, 1284, 1614
DpnI GATC 6 cut(s) 84, 669, 891, 933, 1152, 1278
DpnII GATC 6 cut(s) 82, 667, 889, 931, 1150, 1276
DraI TTTAAA 1 cut(s) 603
DriI GACNNNNNGTC 1 cut(s) 709
Eam1104I CTCTTC 2 cut(s) 576, 633
Eam1105I GACNNNNNGTC 1 cut(s) 709
EarI CTCTTC 2 cut(s) 576, 633
Eco32I GATATC 1 cut(s) 1333
Eco57I CTGAAG 2 cut(s) 1071, 1593
Eco91I GGTNACC 1 cut(s) 41
EcoO65I GGTNACC 1 cut(s) 41
EcoRI GAATTC 1 cut(s) 1366
EcoRV GATATC 1 cut(s) 1333
FaeI CATG 6 cut(s) 71, 140, 614, 964, 1025, 1462
FalI AAGNNNNNCTT 2 cut(s) 849, 881
FaqI GGGAC 2 cut(s) 642, 705
FatI CATG 6 cut(s) 67, 136, 610, 960, 1021, 1458
FauNDI CATATG 1 cut(s) 423
FbaI TGATCA 1 cut(s) 82
FblI GTMKAC 1 cut(s) 355
Fnu4HI GCNGC 6 cut(s) 419, 644, 1013, 1207, 1395, 1552
Fsp4HI GCNGC 6 cut(s) 419, 644, 1013, 1207, 1395, 1552
FspBI CTAG 2 cut(s) 308, 1515
GluI GCNGC 6 cut(s) 419, 644, 1013, 1207, 1395, 1552
GsuI CTGGAG 1 cut(s) 211
HgaI GACGC 3 cut(s) 107, 366, 1160
Hin1II CATG 6 cut(s) 71, 140, 614, 964, 1025, 1462
HincII GTYRAC 1 cut(s) 1587
HindII GTYRAC 1 cut(s) 1587
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 5 cut(s) 565, 768, 805, 834, 1241
HpaI GTTAAC 1 cut(s) 1587
HphI GGTGA 3 cut(s) 35, 509, 976
Hpy166II GTNNAC 2 cut(s) 356, 1587
Hpy188I TCNGA 4 cut(s) 373, 408, 1357, 1441
Hpy188III TCNNGA 6 cut(s) 161, 494, 671, 1022, 1163, 1409
Hpy8I GTNNAC 2 cut(s) 356, 1587
HpyAV CCTTC 3 cut(s) 745, 1296, 1637
HpyCH4III ACNGT 3 cut(s) 1417, 1591, 1603
HpyCH4IV ACGT 1 cut(s) 1321
HpyF3I CTNAG 7 cut(s) 47, 122, 247, 542, 956, 1284, 1614
HpySE526I ACGT 1 cut(s) 1321
Hsp92II CATG 6 cut(s) 71, 140, 614, 964, 1025, 1462
Ksp22I TGATCA 1 cut(s) 82
KspAI GTTAAC 1 cut(s) 1587
Kzo9I GATC 6 cut(s) 82, 667, 889, 931, 1150, 1276
LguI GCTCTTC 1 cut(s) 633
LmnI GCTCC 2 cut(s) 64, 346
Lsp1109I GCAGC 5 cut(s) 405, 630, 999, 1381, 1538
LweI GCATC 2 cut(s) 460, 1096
MaeI CTAG 2 cut(s) 308, 1515
MaeII ACGT 1 cut(s) 1321
MaeIII GTNAC 4 cut(s) 12, 41, 515, 1597
MalI GATC 6 cut(s) 84, 669, 891, 933, 1152, 1278
MboI GATC 6 cut(s) 82, 667, 889, 931, 1150, 1276
MboII GAAGA 7 cut(s) 344, 593, 650, 1221, 1466, 1516, 1652
MfeI CAATTG 2 cut(s) 219, 869
MflI RGATCY 2 cut(s) 667, 889
MhlI GDGCHC 1 cut(s) 80
MluI ACGCGT 1 cut(s) 794
MlyI GAGTC 2 cut(s) 574, 814
MnlI CCTC 8 cut(s) 126, 186, 264, 337, 681, 837, 1231, 1611
MspA1I CMGCKG 1 cut(s) 1613
MspCI CTTAAG 2 cut(s) 59, 1480
MunI CAATTG 2 cut(s) 219, 869
Mva1269I GAATGC 1 cut(s) 559
MvnI CGCG 1 cut(s) 796
NdeI CATATG 1 cut(s) 423
NdeII GATC 6 cut(s) 82, 667, 889, 931, 1150, 1276
NlaIII CATG 6 cut(s) 71, 140, 614, 964, 1025, 1462
NlaIV GGNNCC 1 cut(s) 891
NmuCI GTSAC 2 cut(s) 41, 515
NspI RCATGY 1 cut(s) 1462
PagI TCATGA 1 cut(s) 1021
PciI ACATGT 1 cut(s) 1458
PciSI GCTCTTC 1 cut(s) 633
PctI GAATGC 1 cut(s) 559
PfeI GAWTC 3 cut(s) 768, 834, 1241
PkrI GCNGC 6 cut(s) 420, 645, 1014, 1208, 1396, 1553
PleI GAGTC 2 cut(s) 573, 813
PpsI GAGTC 2 cut(s) 573, 813
PscI ACATGT 1 cut(s) 1458
PshBI ATTAAT 1 cut(s) 93
Psp1406I AACGTT 1 cut(s) 1321
PspEI GGTNACC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 891
PstI CTGCAG 2 cut(s) 648, 1017
PsuI RGATCY 2 cut(s) 667, 889
PvuII CAGCTG 1 cut(s) 1613
RsaI GTAC 3 cut(s) 29, 609, 657
RsaNI GTAC 3 cut(s) 28, 608, 656
SapI GCTCTTC 1 cut(s) 633
SatI GCNGC 6 cut(s) 419, 644, 1013, 1207, 1395, 1552
Sau3AI GATC 6 cut(s) 82, 667, 889, 931, 1150, 1276
SchI GAGTC 2 cut(s) 574, 814
SduI GDGCHC 1 cut(s) 80
SfaNI GCATC 2 cut(s) 460, 1096
SfcI CTRYAG 3 cut(s) 644, 1013, 1044
SmlI CTYRAG 3 cut(s) 59, 1409, 1480
SmoI CTYRAG 3 cut(s) 59, 1409, 1480
SsiI CCGC 1 cut(s) 1206
SspI AATATT 2 cut(s) 479, 1581
SspMI CTAG 2 cut(s) 308, 1515
TaaI ACNGT 3 cut(s) 1417, 1591, 1603
TaiI ACGT 1 cut(s) 1324
TaqI TCGA 1 cut(s) 1576
TatI WGTACW 1 cut(s) 607
TauI GCSGC 1 cut(s) 1209
TfiI GAWTC 3 cut(s) 768, 834, 1241
TscAI CASTG 3 cut(s) 85, 194, 1216
TseFI GTSAC 2 cut(s) 41, 515
TseI GCWGC 5 cut(s) 418, 643, 1012, 1394, 1551
Tsp45I GTSAC 2 cut(s) 41, 515
TspDTI ATGAA 8 cut(s) 84, 153, 294, 368, 734, 990, 1215, 1394
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 3 cut(s) 85, 194, 1216
Vha464I CTTAAG 2 cut(s) 59, 1480
VspI ATTAAT 1 cut(s) 93
XapI RAATTY 6 cut(s) 227, 375, 978, 1176, 1366, 1528
XceI RCATGY 1 cut(s) 1462
XmiI GTMKAC 1 cut(s) 355
XspI CTAG 2 cut(s) 308, 1515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.