Rw7G016630

Zinc finger MYM-type protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
17079587 .. 17082146
2560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G016630.1

Sequence Viewer

Length: 2403 bp
ATGTCTACTAGGAAGTTTGAATTAGCAAGTCTAATACAGAATTCAGTGCCAATTGTAGAAGAAGATGTAGTTGAAAATGTAAATGTAGCAGAGTGTGTTGAACCAACTGTGGTAGAAAATCTAGCAGAGAGTGTTGAACCAAGTGTGGAAGAAAATCTAGCAGAGGGTGTTGAACCAAATCTAGTAGAAAGGGTGCCACAATTCAATGATGTTAACACAAATATTTTTGATCCCAGCCAATGGAAAAACATTGATGCAAACTTAAGAAATTTATTAGTAGAAAAATGTCCTATTAGGCACAAGGACTTAGACTTTCCCAAAGATGAAAAGTCTAGACATTTTGCTTCAAAACACTATACTTGCAGATCATCGAATGGTGAAATTCGTGAAAGAAAATGGCTAGTCTATTCAAAAGATCTAGATAGAGTATTCTGTTTTTGTTGCAAGTTATTTAATGCAAAGAATAGTAGAAGTCAGTTAGCTAATGAAGGATTCAGAGATTGGCAAAATCTTAGTAACAGGCTTAAAGGTCATGAAAGAAGTATTCAACATGTCACTAATATGTGTAGTTGGTTTGAGTTAGAAGAGAGACTCTTAAAAAATAAGACGATTGATAGAGCTCTACAACAACAAGTCAACAAGGAAAAAGTTCATTGGAGAAAAGTATTGAAAAGAATTATTGCTGTTGTTAAAGGTCTTTCTAAAAACAATTTGGCATTTAGGGGAACAAATGAGAAGATAGGTGAGGACAACAATGGAATTTTTCTGAGTTTTATTGAGACAATTGGAGAGTTTGATCCAATAATGAAAGAACATCTTCGGCGTATAAAAGATGATGAAATTCATAGTCATTATCTTGGACCTAAAATACAAAATGAATTGATAGATCTCTTAGCTTATGAAATTAAAACTGAAATCCTAAGAATAGTAAAAGAGGCAAAGTATTTTTCTATCATTCTTGATTGTACTCCTGACGTTAGTAAAAGAGAACAAATGACTTTGATTTTGAGATGTGTGAATATATCAAAAACCCCAGCAAAATTAGAAGAATATTTCTTAGAGTTTTTAAGAGTAGATGACACCACTGGAAAAGGACTTTTTGATGAACTTATATGTGTTATAGCCAAACTAGAACTTGATATTAATGATGCTAGAGGGCAGGGGTATGATAATGGTTCTAACATGAAGGGAAAACATCAAGGTGTCCAGAAAAGGTTATTAGAAATTAATCCAAGAGCATTCTACACACCATGTGGCTCTCATAATCTGAACCTTGTGCTTTCTGACATGGCTAACTCTTGTCCTAAAGCTAAAACTTTTTTTGGAATTGTACAGAAAATATATGTATTATTTTCTTCTTCAACAAAGAGGTGGAAAATTTTAGAAGATAATGTAAGTGATTTAACAATCAAAGCATTGGCTACAACACGGTGGGAAAGTCGGGTAGAAAGTGTCAAGGCTATTAGATATCAAGCTCCACAAATTAGAGATGCTTTACAACAATTAGCAAATGTAGATGACTTAGATGGTGCACTAAAATGTGAAGCTGAAATGTTAGCAGACTATGCTTTTACAAACTTTGAATTTTTATTAGGCATGATTATTTGGTATGATATGCTATATGCTGTTGACTTGGTTAGTAAAAAGCTACAATCTAAAGACATGGATATTGGTGATGCTATTAAATTAGAATATGGATTTACATCTGCTATGATTTCAGCTAGAGAGATTGCACTTGAAATGGAAATAGAACCTATATTCCGTGAAAAACGTAGGACTTGTAGAAAAAAACAATTTGATGAGAATGCAAATGATGAACCAACATTATCTGTTGAAGATACTTTTAGGACTGAGTATTTTTTATATATAGTAGACCAAGCCATATCTTCCCTTCACAGTAGATTTGAACAATTTCAATTATATGAAAGTGTTTTTGGTTTTTTATGTGATGTGAAACAATTAAAGTCATTAGTTGATACTGATTTGAAAGTAAAGTGTCTCAAACTTGAAGAGTTTCTTACTCATGATAATGTTTCTGATATAGATGGTTCAGAGCTGCATTTAGAATTAAGATTGTTAACTGAAATGCTAAACAAAGATTTAGATCGAAAAGTAGAAACACCAATTGAAGTTCTGCACTTTGTTCAAAGATGTGATTGTTTCTCAAATACCATGATTGCTTATAGAATACTATTAACTATTCCTGTTACAGTTGCTTCTGCTGAAAGAAGCTTTTCAAAATTGAAACTAATAAAATCATATTTACGATCAACCATGTCACAAGAAAGATTGAATGGACTAGCCATGTTATCTATTGAAAGAAAATTGTTCAAAAAGTTTAAATACGCTAACTTAATCAACATTTTTGCATCCCAAAAGGCAAGAAGAGTGATCTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

800

Amino Acids

92.67

Weight (kDa)

6.49

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 164 - 401 3.1e-19 Domain of unknown function (DUF4371)
Dimer_Tnp_hAT PF05699 700 - 775 2.1e-14 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccB7I CCANNNNNTGG 1 cut(s) 240
AccI GTMKAC 2 cut(s) 5, 1872
AclWI GGATC 2 cut(s) 224, 791
AcsI RAATTY 7 cut(s) 40, 268, 381, 759, 840, 1377, 1583
AdeI CACNNNGTG 1 cut(s) 1253
AfaI GTAC 2 cut(s) 967, 1332
AfiI CCNNNNNNNGG 1 cut(s) 240
AflII CTTAAG 1 cut(s) 262
AflIII ACRYGT 1 cut(s) 550
AjuI GAANNNNNNNTTGG 2 cut(s) 1917, 1949
AloI GAACNNNNNNTCC 2 cut(s) 1743, 1775
Alw21I GWGCWC 2 cut(s) 622, 1534
Alw26I GTCTC 3 cut(s) 583, 773, 2003
Alw44I GTGCAC 1 cut(s) 1530
AlwI GGATC 2 cut(s) 224, 791
ApaLI GTGCAC 1 cut(s) 1530
ApeKI GCWGC 1 cut(s) 2056
ApoI RAATTY 7 cut(s) 40, 268, 381, 759, 840, 1377, 1583
ArsI GACNNNNNNTTYG 2 cut(s) 988, 1020
AseI ATTAAT 2 cut(s) 1143, 1227
Asp700I GAANNNNTTC 5 cut(s) 648, 816, 1911, 2013, 2233
AspS9I GGNCC 1 cut(s) 860
AsuHPI GGTGA 3 cut(s) 389, 755, 1685
AvaII GGWCC 1 cut(s) 860
BaeGI GKGCMC 1 cut(s) 1534
BanI GGYRCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 622
Bbv12I GWGCWC 2 cut(s) 622, 1534
BbvI GCAGC 1 cut(s) 2043
BccI CCATC 2 cut(s) 1520, 2039
BcoDI GTCTC 3 cut(s) 583, 773, 2003
BfrI CTTAAG 1 cut(s) 262
BglII AGATCT 2 cut(s) 415, 886
BisI GCNGC 1 cut(s) 2057
BlsI GCNGC 1 cut(s) 2058
Bme18I GGWCC 1 cut(s) 860
BmgT120I GGNCC 1 cut(s) 860
BmiI GGNNCC 1 cut(s) 195
BmsI GCATC 5 cut(s) 244, 1138, 1480, 1666, 2378
BsaBI GATNNNNATC 2 cut(s) 1702, 2103
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 1090
Bse8I GATNNNNATC 2 cut(s) 1702, 2103
BseGI GGATG 1 cut(s) 2369
BseJI GATNNNNATC 2 cut(s) 1702, 2103
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 2 cut(s) 758, 1842
BseNI ACTGG 1 cut(s) 1090
BseSI GKGCMC 1 cut(s) 1534
BseXI GCAGC 1 cut(s) 2043
BseYI CCCAGC 2 cut(s) 233, 1033
BsgI GTGCAG 1 cut(s) 2120
BshNI GGYRCC 1 cut(s) 193
BsiHKAI GWGCWC 2 cut(s) 622, 1534
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 3 cut(s) 583, 773, 2003
BsmI GAATGC 2 cut(s) 1238, 1810
Bsp1286I GDGCHC 2 cut(s) 622, 1534
Bsp1407I TGTACA 1 cut(s) 1330
Bsp143I GATC 8 cut(s) 229, 365, 415, 796, 886, 2104, 2267, 2391
BspCNI CTCAG 2 cut(s) 759, 1843
BspHI TCATGA 2 cut(s) 532, 2023
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 2 cut(s) 224, 791
BspT107I GGYRCC 1 cut(s) 193
BspTI CTTAAG 1 cut(s) 262
BsrGI TGTACA 1 cut(s) 1330
BsrI ACTGG 1 cut(s) 1090
BssMI GATC 8 cut(s) 229, 365, 415, 796, 886, 2104, 2267, 2391
Bst4CI ACNGT 4 cut(s) 109, 1431, 1898, 2212
Bst6I CTCTTC 3 cut(s) 579, 2004, 2380
BstAFI CTTAAG 1 cut(s) 262
BstAPI GCANNNNNTGC 1 cut(s) 1565
BstAUI TGTACA 1 cut(s) 1330
BstDEI CTNAG 8 cut(s) 307, 512, 767, 892, 920, 1057, 1522, 1851
BstF5I GGATG 1 cut(s) 2369
BstKTI GATC 8 cut(s) 232, 368, 418, 799, 889, 2107, 2270, 2394
BstMAI GTCTC 3 cut(s) 583, 773, 2003
BstMBI GATC 8 cut(s) 229, 365, 415, 796, 886, 2104, 2267, 2391
BstMWI GCNNNNNNNGC 1 cut(s) 1565
BstNSI RCATGY 1 cut(s) 554
BstSLI GKGCMC 1 cut(s) 1534
BstV1I GCAGC 1 cut(s) 2043
BstX2I RGATCY 2 cut(s) 415, 886
BstYI RGATCY 2 cut(s) 415, 886
BtsCI GGATG 1 cut(s) 2369
BtsIMutI CAGTG 2 cut(s) 51, 1083
CciI TCATGA 2 cut(s) 532, 2023
Cfr13I GGNCC 1 cut(s) 860
Csp6I GTAC 2 cut(s) 966, 1331
CviQI GTAC 2 cut(s) 966, 1331
DdeI CTNAG 8 cut(s) 307, 512, 767, 892, 920, 1057, 1522, 1851
DpnI GATC 8 cut(s) 231, 367, 417, 798, 888, 2106, 2269, 2393
DpnII GATC 8 cut(s) 229, 365, 415, 796, 886, 2104, 2267, 2391
DraI TTTAAA 1 cut(s) 2341
DraIII CACNNNGTG 1 cut(s) 1253
Eam1104I CTCTTC 3 cut(s) 579, 2004, 2380
EarI CTCTTC 3 cut(s) 579, 2004, 2380
Ecl136II GAGCTC 1 cut(s) 620
Eco24I GRGCYC 1 cut(s) 622
Eco32I GATATC 1 cut(s) 1469
Eco47I GGWCC 1 cut(s) 860
Eco53kI GAGCTC 1 cut(s) 620
EcoICRI GAGCTC 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 40
EcoRV GATATC 1 cut(s) 1469
EcoT38I GRGCYC 1 cut(s) 622
FalI AAGNNNNNCTT 4 cut(s) 801, 833, 2001, 2033
FblI GTMKAC 2 cut(s) 5, 1872
Fnu4HI GCNGC 1 cut(s) 2057
FokI GGATG 1 cut(s) 2356
FriOI GRGCYC 1 cut(s) 622
Fsp4HI GCNGC 1 cut(s) 2057
GluI GCNGC 1 cut(s) 2057
GsaI CCCAGC 2 cut(s) 237, 1037
HincII GTYRAC 4 cut(s) 214, 637, 1630, 2079
HindII GTYRAC 4 cut(s) 214, 637, 1630, 2079
HindIII AAGCTT 1 cut(s) 2230
HinfI GANTC 2 cut(s) 492, 591
HpaI GTTAAC 2 cut(s) 214, 2079
HphI GGTGA 3 cut(s) 389, 755, 1685
Hpy166II GTNNAC 7 cut(s) 6, 214, 637, 1532, 1630, 1873, 2079
Hpy188I TCNGA 6 cut(s) 497, 768, 1269, 1285, 2038, 2053
Hpy188III TCNNGA 8 cut(s) 333, 386, 419, 533, 959, 971, 1207, 2024
Hpy8I GTNNAC 7 cut(s) 6, 214, 637, 1532, 1630, 1873, 2079
HpyAV CCTTC 3 cut(s) 482, 1180, 1901
HpyCH4III ACNGT 4 cut(s) 109, 1431, 1898, 2212
HpyCH4IV ACGT 2 cut(s) 975, 1771
HpyF10VI GCNNNNNNNGC 1 cut(s) 1565
HpyF3I CTNAG 8 cut(s) 307, 512, 767, 892, 920, 1057, 1522, 1851
HpySE526I ACGT 2 cut(s) 975, 1771
KspAI GTTAAC 2 cut(s) 214, 2079
Kzo9I GATC 8 cut(s) 229, 365, 415, 796, 886, 2104, 2267, 2391
LmnI GCTCC 1 cut(s) 1480
LpnPI CCDG 8 cut(s) 247, 505, 984, 1047, 1071, 1145, 1220, 2217
Lsp1109I GCAGC 1 cut(s) 2043
LweI GCATC 5 cut(s) 244, 1138, 1480, 1666, 2378
MaeII ACGT 2 cut(s) 975, 1771
MaeIII GTNAC 4 cut(s) 515, 553, 2206, 2277
MalI GATC 8 cut(s) 231, 367, 417, 798, 888, 2106, 2269, 2393
MboI GATC 8 cut(s) 229, 365, 415, 796, 886, 2104, 2267, 2391
MfeI CAATTG 3 cut(s) 51, 783, 2124
MflI RGATCY 2 cut(s) 415, 886
MhlI GDGCHC 2 cut(s) 622, 1534
MlyI GAGTC 1 cut(s) 585
MnlI CCTC 5 cut(s) 157, 739, 928, 1148, 1362
MroXI GAANNNNTTC 5 cut(s) 648, 816, 1911, 2013, 2233
MslI CAYNNNNRTG 4 cut(s) 560, 1200, 1537, 2028
MspCI CTTAAG 1 cut(s) 262
MunI CAATTG 3 cut(s) 51, 783, 2124
Mva1269I GAATGC 2 cut(s) 1238, 1810
MwoI GCNNNNNNNGC 1 cut(s) 1565
NdeII GATC 8 cut(s) 229, 365, 415, 796, 886, 2104, 2267, 2391
NlaIV GGNNCC 1 cut(s) 195
NmuCI GTSAC 2 cut(s) 553, 2277
NspI RCATGY 1 cut(s) 554
PagI TCATGA 2 cut(s) 532, 2023
PciI ACATGT 1 cut(s) 550
PctI GAATGC 2 cut(s) 1238, 1810
PdmI GAANNNNTTC 5 cut(s) 648, 816, 1911, 2013, 2233
PfeI GAWTC 1 cut(s) 492
PflMI CCANNNNNTGG 1 cut(s) 240
PkrI GCNGC 1 cut(s) 2058
PleI GAGTC 1 cut(s) 585
PpsI GAGTC 1 cut(s) 585
PscI ACATGT 1 cut(s) 550
PshBI ATTAAT 2 cut(s) 1143, 1227
Psp124BI GAGCTC 1 cut(s) 622
PspFI CCCAGC 2 cut(s) 233, 1033
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 860
PsuI RGATCY 2 cut(s) 415, 886
RsaI GTAC 2 cut(s) 967, 1332
RsaNI GTAC 2 cut(s) 966, 1331
RseI CAYNNNNRTG 4 cut(s) 560, 1200, 1537, 2028
SacI GAGCTC 1 cut(s) 622
SatI GCNGC 1 cut(s) 2057
Sau3AI GATC 8 cut(s) 229, 365, 415, 796, 886, 2104, 2267, 2391
Sau96I GGNCC 1 cut(s) 860
SchI GAGTC 1 cut(s) 585
SduI GDGCHC 2 cut(s) 622, 1534
SfaNI GCATC 5 cut(s) 244, 1138, 1480, 1666, 2378
SinI GGWCC 1 cut(s) 860
SmiMI CAYNNNNRTG 4 cut(s) 560, 1200, 1537, 2028
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
SspI AATATT 2 cut(s) 223, 1052
SstI GAGCTC 1 cut(s) 622
TaaI ACNGT 4 cut(s) 109, 1431, 1898, 2212
TaiI ACGT 2 cut(s) 978, 1774
TaqI TCGA 2 cut(s) 371, 2107
TatI WGTACW 2 cut(s) 965, 1330
TfiI GAWTC 1 cut(s) 492
TscAI CASTG 2 cut(s) 51, 1090
TseFI GTSAC 2 cut(s) 553, 2277
TseI GCWGC 1 cut(s) 2056
Tsp45I GTSAC 2 cut(s) 553, 2277
TspGWI ACGGA 1 cut(s) 1751
TspRI CASTG 2 cut(s) 51, 1090
Van91I CCANNNNNTGG 1 cut(s) 240
Vha464I CTTAAG 1 cut(s) 262
VneI GTGCAC 1 cut(s) 1530
VpaK11BI GGWCC 1 cut(s) 860
VspI ATTAAT 2 cut(s) 1143, 1227
XapI RAATTY 7 cut(s) 40, 268, 381, 759, 840, 1377, 1583
XbaI TCTAGA 2 cut(s) 332, 418
XceI RCATGY 1 cut(s) 554
XmiI GTMKAC 2 cut(s) 5, 1872
XmnI GAANNNNTTC 5 cut(s) 648, 816, 1911, 2013, 2233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.