Rorug03G0340700

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000215
Physical Location & Seq
Reverse (-)
40702500 .. 40709424
6925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0340700.1

Sequence Viewer

Length: 843 bp
ATGAATCCTATGGAATTCATCGAGTCACTCGATCCTCAGATCCTTGTGGGTGTATCTGTAGCTTTTGTTGTCATTGTGGTTGCAGCTTTTCTCTTCTCCTCCAAGAAGCCCAAAGGTTGCTTAGATCCCCAGAATTTCAAGGACTTCAAACTTGTCAAGCGCACACAACTGAGCCACAATGTGGCAAAGTTCAAATTTGAACTTCCGACATCGACTTCAATTTTAGGTCTTCCGATTGGACAACACATAAGTTGTAGGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCATATACCCCAACCACATTGGATTCTGATGTTGGATACTTTGAACTAGTGATAAAGATGTATCCTCAAGGAAGAATGTCACACCATTTCCGTGAGATGCGTGTTGGAGATCATCTTGCTGTCAAGGGACCCAAGGGCCGTTTCAAGTATGAACCTGGCCAAGTTAGAGCTTTTGGGATGCTTGCTGGAGGCTCTGGAATCACTCCAATGTTCCAGGTTGCTAGGGCAATATTAGAAAATCCAAAAGACAAAACAAGGGTTCACCTGATCTATGCCAATGTGACCTACGAGGACATCCTCTTGAAGGATGAGTTGGATGGCCTTGCTAGAACTTACCCTGATCGCTTCCAAATCTACTACGTATTGAATCAGCCTCCTGAAGTATGGGATGGTGGTGTTGGATTTGTCTCGAAGGAAATTATTCAAACTCACTTGCCAGCCCCTGGCCCTGATATTCAGATCCTAAGATGTGGTCCACCACCCATGAACAAGGCCATGGCTGCTCATCTTGAATCACTTGAATATGCACCTCATATGCAGTTCCAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

280

Amino Acids

31.39

Weight (kDa)

8.31

Isoelectric Point (pI)

30.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_6 PF00970 49 - 147 4.7e-34 Oxidoreductase FAD-binding domain
NAD_binding_1 PF00175 157 - 263 6.3e-30 Oxidoreductase NAD-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 181, 734
AclWI GGATC 4 cut(s) 26, 34, 119, 745
AcoI YGGCCR 2 cut(s) 268, 448
AcsI RAATTY 3 cut(s) 14, 133, 194
AcuI CTGAAG 1 cut(s) 690
AdeI CACNNNGTG 1 cut(s) 181
AfiI CCNNNNNNNGG 3 cut(s) 181, 595, 734
AhlI ACTAGT 1 cut(s) 337
AjnI CCWGG 3 cut(s) 445, 504, 733
AjuI GAANNNNNNNTTGG 4 cut(s) 416, 448, 587, 619
AluBI AGCT 3 cut(s) 62, 86, 461
AluI AGCT 3 cut(s) 62, 86, 461
Alw26I GTCTC 1 cut(s) 703
AlwI GGATC 4 cut(s) 26, 34, 119, 745
AlwNI CAGNNNCTG 1 cut(s) 734
AoxI GGCC 6 cut(s) 268, 427, 448, 610, 736, 783
ApeKI GCWGC 2 cut(s) 83, 791
ApoI RAATTY 3 cut(s) 14, 133, 194
Asp700I GAANNNNTTC 1 cut(s) 711
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 4 cut(s) 419, 427, 737, 764
AsuHPI GGTGA 2 cut(s) 287, 545
AvaII GGWCC 2 cut(s) 419, 764
BalI TGGCCA 2 cut(s) 270, 450
BbsI GAAGAC 1 cut(s) 221
BbvI GCAGC 2 cut(s) 95, 778
BccI CCATC 3 cut(s) 260, 602, 674
BceAI ACGGC 1 cut(s) 414
BciT130I CCWGG 3 cut(s) 447, 506, 735
BciVI GTATCC 2 cut(s) 320, 363
BcoDI GTCTC 1 cut(s) 703
BcuI ACTAGT 1 cut(s) 337
BfaI CTAG 3 cut(s) 338, 513, 618
BfmI CTRYAG 1 cut(s) 57
BfuI GTATCC 2 cut(s) 320, 363
BisI GCNGC 2 cut(s) 84, 792
BlsI GCNGC 2 cut(s) 85, 793
Bme1390I CCNGG 3 cut(s) 447, 506, 735
Bme18I GGWCC 2 cut(s) 419, 764
BmgT120I GGNCC 4 cut(s) 419, 427, 737, 764
BmiI GGNNCC 2 cut(s) 420, 421
BmrFI CCNGG 3 cut(s) 447, 506, 735
BmsI GCATC 2 cut(s) 378, 459
BpiI GAAGAC 1 cut(s) 221
BpmI CTGGAG 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 652
BsaJI CCNNGG 4 cut(s) 271, 423, 733, 786
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 595, 734
Bse1I ACTGG 1 cut(s) 835
BseBI CCWGG 3 cut(s) 447, 506, 735
BseDI CCNNGG 4 cut(s) 271, 423, 733, 786
BseGI GGATG 6 cut(s) 271, 474, 585, 604, 613, 685
BseLI CCNNNNNNNGG 3 cut(s) 181, 595, 734
BseMII CTCAG 2 cut(s) 50, 161
BseNI ACTGG 1 cut(s) 835
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 2 cut(s) 95, 778
BshFI GGCC 6 cut(s) 270, 429, 450, 612, 738, 785
BslFI GGGAC 1 cut(s) 432
BslI CCNNNNNNNGG 3 cut(s) 181, 595, 734
BsmAI GTCTC 1 cut(s) 703
BsmFI GGGAC 1 cut(s) 432
BsnI GGCC 6 cut(s) 270, 429, 450, 612, 738, 785
Bsp143I GATC 7 cut(s) 31, 39, 124, 400, 558, 631, 750
Bsp19I CCATGG 1 cut(s) 786
BspANI GGCC 6 cut(s) 270, 429, 450, 612, 738, 785
BspCNI CTCAG 2 cut(s) 49, 162
BspLI GGNNCC 2 cut(s) 420, 421
BspPI GGATC 4 cut(s) 26, 34, 119, 745
BsrI ACTGG 1 cut(s) 835
BssECI CCNNGG 4 cut(s) 271, 423, 733, 786
BssMI GATC 7 cut(s) 31, 39, 124, 400, 558, 631, 750
BssT1I CCWWGG 3 cut(s) 271, 423, 786
Bst2UI CCWGG 3 cut(s) 447, 506, 735
Bst6I CTCTTC 2 cut(s) 98, 273
BstBAI YACGTR 1 cut(s) 652
BstC8I GCNNGC 2 cut(s) 474, 729
BstDEI CTNAG 4 cut(s) 36, 121, 170, 755
BstDSI CCRYGG 1 cut(s) 786
BstENI CCTNNNNNAGG 1 cut(s) 593
BstF5I GGATG 6 cut(s) 271, 474, 585, 604, 613, 685
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 7 cut(s) 34, 42, 127, 403, 561, 634, 753
BstMAI GTCTC 1 cut(s) 703
BstMBI GATC 7 cut(s) 31, 39, 124, 400, 558, 631, 750
BstMWI GCNNNNNNNGC 2 cut(s) 267, 791
BstNI CCWGG 3 cut(s) 447, 506, 735
BstSCI CCNGG 3 cut(s) 445, 504, 733
BstSFI CTRYAG 1 cut(s) 57
BstSNI TACGTA 1 cut(s) 652
BstV1I GCAGC 2 cut(s) 95, 778
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 3 cut(s) 39, 124, 750
BstYI RGATCY 3 cut(s) 39, 124, 750
BsuI GTATCC 2 cut(s) 320, 363
BsuRI GGCC 6 cut(s) 270, 429, 450, 612, 738, 785
BtgI CCRYGG 1 cut(s) 786
BtsCI GGATG 6 cut(s) 271, 474, 585, 604, 613, 685
Cac8I GCNNGC 2 cut(s) 474, 729
CaiI CAGNNNCTG 1 cut(s) 734
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 4 cut(s) 419, 427, 737, 764
CviAII CATG 2 cut(s) 775, 787
DdeI CTNAG 4 cut(s) 36, 121, 170, 755
DpnI GATC 7 cut(s) 33, 41, 126, 402, 560, 633, 752
DpnII GATC 7 cut(s) 31, 39, 124, 400, 558, 631, 750
DraIII CACNNNGTG 1 cut(s) 181
EaeI YGGCCR 2 cut(s) 268, 448
Eam1104I CTCTTC 2 cut(s) 98, 273
EarI CTCTTC 2 cut(s) 98, 273
Eco105I TACGTA 1 cut(s) 652
Eco130I CCWWGG 3 cut(s) 271, 423, 786
Eco47I GGWCC 2 cut(s) 419, 764
Eco57I CTGAAG 1 cut(s) 690
EcoNI CCTNNNNNAGG 1 cut(s) 593
EcoO109I RGGNCCY 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 3 cut(s) 445, 504, 733
EcoT14I CCWWGG 3 cut(s) 271, 423, 786
ErhI CCWWGG 3 cut(s) 271, 423, 786
FaeI CATG 2 cut(s) 778, 790
FaqI GGGAC 1 cut(s) 432
FatI CATG 2 cut(s) 774, 786
FauNDI CATATG 1 cut(s) 825
Fnu4HI GCNGC 2 cut(s) 84, 792
FokI GGATG 6 cut(s) 278, 481, 572, 611, 620, 692
Fsp4HI GCNGC 2 cut(s) 84, 792
FspBI CTAG 3 cut(s) 338, 513, 618
GlaI GCGC 1 cut(s) 161
GluI GCNGC 2 cut(s) 84, 792
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 6 cut(s) 270, 429, 450, 612, 738, 785
HhaI GCGC 1 cut(s) 162
Hin1II CATG 2 cut(s) 778, 790
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 6 cut(s) 4, 23, 314, 489, 658, 803
HphI GGTGA 2 cut(s) 287, 545
Hpy166II GTNNAC 2 cut(s) 553, 767
Hpy188I TCNGA 6 cut(s) 39, 207, 234, 319, 750, 842
Hpy188III TCNNGA 5 cut(s) 486, 592, 668, 700, 800
Hpy8I GTNNAC 2 cut(s) 553, 767
HpyAV CCTTC 2 cut(s) 589, 697
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 3 cut(s) 83, 818, 829
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 791
HpyF3I CTNAG 4 cut(s) 36, 121, 170, 755
HpySE526I ACGT 1 cut(s) 651
Hsp92II CATG 2 cut(s) 778, 790
HspAI GCGC 1 cut(s) 160
KflI GGGWCCC 1 cut(s) 419
Kzo9I GATC 7 cut(s) 31, 39, 124, 400, 558, 631, 750
Lsp1109I GCAGC 2 cut(s) 95, 778
LweI GCATC 2 cut(s) 378, 459
MaeI CTAG 3 cut(s) 338, 513, 618
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 3 cut(s) 24, 369, 571
MalI GATC 7 cut(s) 33, 41, 126, 402, 560, 633, 752
MboI GATC 7 cut(s) 31, 39, 124, 400, 558, 631, 750
MboII GAAGA 4 cut(s) 85, 221, 290, 375
MflI RGATCY 3 cut(s) 39, 124, 750
MlsI TGGCCA 2 cut(s) 270, 450
MluCI AATT 5 cut(s) 14, 133, 194, 219, 708
MluNI TGGCCA 2 cut(s) 270, 450
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 5 cut(s) 230, 304, 376, 585, 670
MnlI CCTC 9 cut(s) 45, 109, 274, 366, 473, 574, 599, 675, 831
Mox20I TGGCCA 2 cut(s) 270, 450
MroXI GAANNNNTTC 1 cut(s) 711
MscI TGGCCA 2 cut(s) 270, 450
MslI CAYNNNNRTG 2 cut(s) 381, 497
Msp20I TGGCCA 2 cut(s) 270, 450
MspR9I CCNGG 3 cut(s) 447, 506, 735
MvaI CCWGG 3 cut(s) 447, 506, 735
MwoI GCNNNNNNNGC 2 cut(s) 267, 791
NcoI CCATGG 1 cut(s) 786
NdeI CATATG 1 cut(s) 825
NdeII GATC 7 cut(s) 31, 39, 124, 400, 558, 631, 750
NlaIII CATG 2 cut(s) 778, 790
NlaIV GGNNCC 2 cut(s) 420, 421
NmuCI GTSAC 3 cut(s) 24, 369, 571
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 711
PfeI GAWTC 5 cut(s) 4, 314, 489, 658, 803
PflMI CCANNNNNTGG 2 cut(s) 181, 734
PkrI GCNGC 2 cut(s) 85, 793
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Ppu21I YACGTR 1 cut(s) 652
PpuMI RGGWCCY 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 419
Psp6I CCWGG 3 cut(s) 445, 504, 733
PspGI CCWGG 3 cut(s) 445, 504, 733
PspN4I GGNNCC 2 cut(s) 420, 421
PspPI GGNCC 4 cut(s) 419, 427, 737, 764
PspPPI RGGWCCY 1 cut(s) 419
PstNI CAGNNNCTG 1 cut(s) 734
PsuI RGATCY 3 cut(s) 39, 124, 750
RseI CAYNNNNRTG 2 cut(s) 381, 497
SatI GCNGC 2 cut(s) 84, 792
Sau3AI GATC 7 cut(s) 31, 39, 124, 400, 558, 631, 750
Sau96I GGNCC 4 cut(s) 419, 427, 737, 764
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 3 cut(s) 447, 506, 735
SfaNI GCATC 2 cut(s) 378, 459
SfcI CTRYAG 1 cut(s) 57
SinI GGWCC 2 cut(s) 419, 764
SmiMI CAYNNNNRTG 2 cut(s) 381, 497
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
SnaBI TACGTA 1 cut(s) 652
SpeI ACTAGT 1 cut(s) 337
Sse9I AATT 5 cut(s) 14, 133, 194, 219, 708
SspI AATATT 1 cut(s) 522
SspMI CTAG 3 cut(s) 338, 513, 618
StyD4I CCNGG 3 cut(s) 445, 504, 733
StyI CCWWGG 3 cut(s) 271, 423, 786
TaiI ACGT 1 cut(s) 654
TaqI TCGA 4 cut(s) 21, 30, 212, 701
TasI AATT 5 cut(s) 14, 133, 194, 219, 708
TfiI GAWTC 5 cut(s) 4, 314, 489, 658, 803
TseFI GTSAC 3 cut(s) 24, 369, 571
TseI GCWGC 2 cut(s) 83, 791
Tsp45I GTSAC 3 cut(s) 24, 369, 571
TspDTI ATGAA 4 cut(s) 7, 17, 456, 791
TspGWI ACGGA 1 cut(s) 371
Van91I CCANNNNNTGG 2 cut(s) 181, 734
VpaK11BI GGWCC 2 cut(s) 419, 764
XagI CCTNNNNNAGG 1 cut(s) 593
XapI RAATTY 3 cut(s) 14, 133, 194
XmnI GAANNNNTTC 1 cut(s) 711
XspI CTAG 3 cut(s) 338, 513, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.