Rw5G019330

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000215
Physical Location & Seq
Forward (+)
25177294 .. 25178438
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G019330.1

Sequence Viewer

Length: 1104 bp
ATGGCTAATTGTACTCCTAAAGCCGATTACTTTTTTGGAGTGGTACAACGAATATATTCGTTCTTTTCATCTTCGACAAAGAGATGGCAAGTTTTTAGGGATCATGTGGAAGGACTCTCTCTTAAACCATTGTCTGAAACACGATGGGAAAGTCGTGTTGAAAGTATAAAAGCATTTACATTCCAAGCTCCCCAAATAAGAGATGCTTTAGCTTACTTGGCAAAACATGGTGATGATTCCAAAACAAGATCTGACGCTGAATGCATGGCAACATATGAAATGGAGAATTTTGAATTCTTGTTGGGTATGGTTATTTGGTACGATTTATTACATCATATTGATGTTGCCATTGAAAAATTGGAAAAGCTTATTTTAATTATGCAAAAGTATAGAGAAACTGGATTTGATGAGGCCTTGATCAAAGCTAAAAACATTTCAAGTGAGATGAAAATTGAAGCCGTATTCCGTGAAAGAAGAACCATTCAGAAAAAGAAGCAGTTTGATGATAGTGAAAGCGACAATGAAGAGGTGACACAATCAGCTTTGGAATCATTTAAGGTTAGTTACTTTCTTTATATAATTGATCAAGCTCTTTCTTCACTTCAAAGTAGGTTTGAACAATTTAAGAAATATGAAGAAGATTTTGGATTTTTATTCAAGTTGGAGAACTTGAAGTCTATAGATAATAAAAGTTTGATGAATTATTGTATGAATCTTGAAGATTTGTTGAAGGATGGTGTTGTTTCTGACATTAATGGGAGTGATTTATTTTCTGAGTTGTGCTACTTGAAAGGAGCTATACCAAATGAAACAAAAAGGGCAGTTGAAGTGTTGAACTATTTGAAGCAAATGGATGGTTGTTACCCAAATGCTTGGATTGCTTACAGAATTCTGTTAACCATACCGGTTACTGTTGCCTCTGCTGAGAGAAGCTTTTCAAAATTAAAGTTGATCAAATCGTATCTTCGATCAACTATGTCACAAGAAAGACTAAATGGTTTAGCTATGTTATCTATTGAAAAAGACTTGGTTGAAAAGCTTGACTATTCAAGCTTAATTGAAACTTTTGCGGCCAAGAATGCAAGAAGGGTAATTTTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

367

Amino Acids

42.65

Weight (kDa)

5.69

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 273 - 343 3.1e-20 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1070
AclWI GGATC 1 cut(s) 108
AcoI YGGCCR 1 cut(s) 1071
AcsI RAATTY 3 cut(s) 286, 293, 888
AfaI GTAC 3 cut(s) 13, 45, 320
AgeI ACCGGT 1 cut(s) 904
AjuI GAANNNNNNNTTGG 2 cut(s) 627, 659
AlwI GGATC 1 cut(s) 108
AoxI GGCC 2 cut(s) 411, 1071
ApoI RAATTY 3 cut(s) 286, 293, 888
AseI ATTAAT 1 cut(s) 753
AsiGI ACCGGT 1 cut(s) 904
Asp700I GAANNNNTTC 2 cut(s) 55, 934
AsuHPI GGTGA 2 cut(s) 242, 541
BccI CCATC 4 cut(s) 78, 138, 728, 848
BceAI ACGGC 1 cut(s) 443
BclI TGATCA 3 cut(s) 417, 583, 951
BfmI CTRYAG 1 cut(s) 678
BglII AGATCT 1 cut(s) 248
BisI GCNGC 1 cut(s) 1071
BlsI GCNGC 1 cut(s) 1072
BmsI GCATC 1 cut(s) 193
BsaWI WCCGGW 1 cut(s) 904
Bse118I RCCGGY 1 cut(s) 904
Bse1I ACTGG 1 cut(s) 403
BseGI GGATG 2 cut(s) 739, 859
BseMII CTCAG 2 cut(s) 765, 915
BseNI ACTGG 1 cut(s) 403
BshFI GGCC 2 cut(s) 413, 1073
BshTI ACCGGT 1 cut(s) 904
BsiSI CCGG 1 cut(s) 905
BsmI GAATGC 2 cut(s) 266, 1084
BsnI GGCC 2 cut(s) 413, 1073
Bsp143I GATC 6 cut(s) 100, 248, 417, 583, 951, 968
BspACI CCGC 1 cut(s) 1070
BspANI GGCC 2 cut(s) 413, 1073
BspCNI CTCAG 2 cut(s) 766, 916
BspPI GGATC 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 904
BsrI ACTGG 1 cut(s) 403
BssAI RCCGGY 1 cut(s) 904
BssMI GATC 6 cut(s) 100, 248, 417, 583, 951, 968
Bst4CI ACNGT 1 cut(s) 913
Bst6I CTCTTC 1 cut(s) 519
BstDEI CTNAG 2 cut(s) 774, 924
BstF5I GGATG 2 cut(s) 739, 859
BstKTI GATC 6 cut(s) 103, 251, 420, 586, 954, 971
BstMBI GATC 6 cut(s) 100, 248, 417, 583, 951, 968
BstMWI GCNNNNNNNGC 3 cut(s) 218, 878, 1079
BstSFI CTRYAG 1 cut(s) 678
BstX2I RGATCY 1 cut(s) 248
BstXI CCANNNNNNTGG 1 cut(s) 873
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 2 cut(s) 413, 1073
BtsCI GGATG 2 cut(s) 739, 859
Cfr10I RCCGGY 1 cut(s) 904
CseI GACGC 1 cut(s) 263
Csp6I GTAC 3 cut(s) 12, 44, 319
CspAI ACCGGT 1 cut(s) 904
CviAII CATG 3 cut(s) 104, 227, 265
CviQI GTAC 3 cut(s) 12, 44, 319
DdeI CTNAG 2 cut(s) 774, 924
DpnI GATC 6 cut(s) 102, 250, 419, 585, 953, 970
DpnII GATC 6 cut(s) 100, 248, 417, 583, 951, 968
EaeI YGGCCR 1 cut(s) 1071
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Eco147I AGGCCT 1 cut(s) 413
EcoRI GAATTC 2 cut(s) 293, 888
EcoT22I ATGCAT 1 cut(s) 266
FaeI CATG 3 cut(s) 107, 230, 268
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FatI CATG 3 cut(s) 103, 226, 264
FauNDI CATATG 1 cut(s) 274
FbaI TGATCA 3 cut(s) 417, 583, 951
Fnu4HI GCNGC 1 cut(s) 1071
FokI GGATG 2 cut(s) 746, 866
Fsp4HI GCNGC 1 cut(s) 1071
GluI GCNGC 1 cut(s) 1071
HaeIII GGCC 2 cut(s) 413, 1073
HapII CCGG 1 cut(s) 905
HgaI GACGC 1 cut(s) 263
Hin1II CATG 3 cut(s) 107, 230, 268
HincII GTYRAC 1 cut(s) 897
HindII GTYRAC 1 cut(s) 897
HindIII AAGCTT 4 cut(s) 365, 931, 1037, 1051
HinfI GANTC 4 cut(s) 114, 236, 548, 712
HpaI GTTAAC 1 cut(s) 897
HpaII CCGG 1 cut(s) 905
HphI GGTGA 2 cut(s) 242, 541
Hpy166II GTNNAC 1 cut(s) 897
Hpy188I TCNGA 5 cut(s) 136, 253, 486, 748, 775
Hpy188III TCNNGA 1 cut(s) 716
Hpy8I GTNNAC 1 cut(s) 897
HpyAV CCTTC 3 cut(s) 104, 724, 1080
HpyCH4III ACNGT 1 cut(s) 913
HpyCH4V TGCA 3 cut(s) 264, 382, 1082
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 878, 1079
HpyF3I CTNAG 2 cut(s) 774, 924
Hsp92II CATG 3 cut(s) 107, 230, 268
Ksp22I TGATCA 3 cut(s) 417, 583, 951
KspAI GTTAAC 1 cut(s) 897
Kzo9I GATC 6 cut(s) 100, 248, 417, 583, 951, 968
LmnI GCTCC 2 cut(s) 193, 794
LpnPI CCDG 2 cut(s) 384, 918
LweI GCATC 1 cut(s) 193
MaeIII GTNAC 5 cut(s) 529, 563, 860, 907, 978
MalI GATC 6 cut(s) 102, 250, 419, 585, 953, 970
MboI GATC 6 cut(s) 100, 248, 417, 583, 951, 968
MboII GAAGA 8 cut(s) 63, 486, 536, 588, 647, 650, 731, 956
MflI RGATCY 1 cut(s) 248
MlyI GAGTC 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 642
MnlI CCTC 3 cut(s) 403, 520, 928
Mph1103I ATGCAT 1 cut(s) 266
MroXI GAANNNNTTC 2 cut(s) 55, 934
MseI TTAA 8 cut(s) 123, 374, 555, 624, 753, 896, 944, 1055
MslI CAYNNNNRTG 2 cut(s) 231, 339
MspI CCGG 1 cut(s) 905
Mva1269I GAATGC 2 cut(s) 266, 1084
MwoI GCNNNNNNNGC 3 cut(s) 218, 878, 1079
NdeI CATATG 1 cut(s) 274
NdeII GATC 6 cut(s) 100, 248, 417, 583, 951, 968
NlaIII CATG 3 cut(s) 107, 230, 268
NmuCI GTSAC 2 cut(s) 529, 978
NsiI ATGCAT 1 cut(s) 266
PceI AGGCCT 1 cut(s) 413
PctI GAATGC 2 cut(s) 266, 1084
PdmI GAANNNNTTC 2 cut(s) 55, 934
PfeI GAWTC 3 cut(s) 236, 548, 712
PinAI ACCGGT 1 cut(s) 904
PkrI GCNGC 1 cut(s) 1072
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
PshBI ATTAAT 1 cut(s) 753
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 3 cut(s) 13, 45, 320
RsaNI GTAC 3 cut(s) 12, 44, 319
RseI CAYNNNNRTG 2 cut(s) 231, 339
SaqAI TTAA 8 cut(s) 123, 374, 555, 624, 753, 896, 944, 1055
SatI GCNGC 1 cut(s) 1071
Sau3AI GATC 6 cut(s) 100, 248, 417, 583, 951, 968
SchI GAGTC 1 cut(s) 108
SfaNI GCATC 1 cut(s) 193
SfcI CTRYAG 1 cut(s) 678
SmiMI CAYNNNNRTG 2 cut(s) 231, 339
SseBI AGGCCT 1 cut(s) 413
SsiI CCGC 1 cut(s) 1070
StuI AGGCCT 1 cut(s) 413
TaaI ACNGT 1 cut(s) 913
TaqI TCGA 2 cut(s) 74, 967
TatI WGTACW 1 cut(s) 11
TauI GCSGC 1 cut(s) 1073
TfiI GAWTC 3 cut(s) 236, 548, 712
Tru1I TTAA 8 cut(s) 123, 374, 555, 624, 753, 896, 944, 1055
Tru9I TTAA 8 cut(s) 123, 374, 555, 624, 753, 896, 944, 1055
TseFI GTSAC 2 cut(s) 529, 978
Tsp45I GTSAC 2 cut(s) 529, 978
TspDTI ATGAA 8 cut(s) 57, 291, 461, 537, 648, 713, 725, 822
TspGWI ACGGA 1 cut(s) 455
VspI ATTAAT 1 cut(s) 753
XapI RAATTY 3 cut(s) 286, 293, 888
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XmnI GAANNNNTTC 2 cut(s) 55, 934
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.