RchiOBHm_Chr7g0233981

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000215
Physical Location & Seq
Reverse (-)
58561488 .. 58563709
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20970

Sequence Viewer

Length: 768 bp
ATGCATGTTGATACTGCCATCAAAGAATTGGAACGTCTTCTTTCATTTCTTCAAAAGTTTAGAGAAACTGGATTTGAGGAGTCCTTGATTGAAGCTAAAGAGATTGCAAGTGAGATGGGGATTGAACCGGTATTCATGGAAAAACGGACAATTCACAAAAAGAGACAATTTGGTGAAAGCTCTAGCGAAGCGGTGACACAATCAGCTGCAGAATCCTTTAAAGTCAATTATTTCCTCTACATAGTTGATCAAGCTATTTCCTCATTCAAAACCAGGTTTGAGCAATTTAAGACTTTTGAAGAGAATTTTGGGCTTTTGTTTGATTTGGACAAGTTAAGGTCTGCAGATAGAGATAGTTTGAAGAGTTTTTGTGCTAACCTAACAAATTTATTGAAGCATGGCGAGATTTCTGATCTTAATGAAGATGATCTATATCATGACTTACGAATGTTGAGTGAAGATTTACCCAATGAAACAAAAAGAGCTATTGATGTGTTGAATTACATAAAAGAAGTTGATGGCTGTTATCCAAATGCTTGGATTGCTTATAGGATTTTGCTAACTATACCAGTCACAGTTGCCTCTGCAGAAAGAAGTTTTTCAAAGTTGAAATTGATCAAATCTTACCTTCGGTCTACTATGTCACAAGAGAGATTGAGTGGTTTGGCTATGATATCTATTGAAAAAGATATTGTTGGAAAACTTGATTATGTAAATTTGATTAGTACCTTTGCATCTAAAAATGCAAGACGAGTCATATTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

255

Amino Acids

29.39

Weight (kDa)

5.73

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 152 - 230 3.1e-20 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 635
AciI CCGC 1 cut(s) 191
AcsI RAATTY 3 cut(s) 304, 385, 715
AfaI GTAC 1 cut(s) 727
AgeI ACCGGT 1 cut(s) 127
AjnI CCWGG 1 cut(s) 272
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 5 cut(s) 95, 180, 206, 254, 485
AluI AGCT 5 cut(s) 95, 180, 206, 254, 485
Alw26I GTCTC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 3 cut(s) 304, 385, 715
AsiGI ACCGGT 1 cut(s) 127
Asp700I GAANNNNTTC 2 cut(s) 36, 598
AsuHPI GGTGA 2 cut(s) 185, 205
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 193
BccI CCATC 3 cut(s) 26, 109, 512
BciT130I CCWGG 1 cut(s) 274
BclI TGATCA 2 cut(s) 247, 615
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 3 cut(s) 207, 342, 585
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 743
BpiI GAAGAC 1 cut(s) 29
BsaBI GATNNNNATC 1 cut(s) 432
BsaWI WCCGGW 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 2 cut(s) 73, 569
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 1 cut(s) 274
BseJI GATNNNNATC 1 cut(s) 432
BseNI ACTGG 2 cut(s) 73, 569
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 193
BshTI ACCGGT 1 cut(s) 127
BsiSI CCGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 157
Bsp143I GATC 4 cut(s) 247, 412, 427, 615
BspACI CCGC 1 cut(s) 191
BspHI TCATGA 1 cut(s) 436
BspMAI CTGCAG 3 cut(s) 211, 346, 589
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 2 cut(s) 73, 569
BssAI RCCGGY 1 cut(s) 127
BssMI GATC 4 cut(s) 247, 412, 427, 615
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 577
Bst6I CTCTTC 2 cut(s) 294, 356
BstKTI GATC 4 cut(s) 250, 415, 430, 618
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 4 cut(s) 247, 412, 427, 615
BstMWI GCNNNNNNNGC 1 cut(s) 542
BstNI CCWGG 1 cut(s) 274
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 272
BstSFI CTRYAG 3 cut(s) 207, 342, 585
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 29
BstXI CCANNNNNNTGG 1 cut(s) 537
CciI TCATGA 1 cut(s) 436
Cfr10I RCCGGY 1 cut(s) 127
CsiI ACCWGGT 1 cut(s) 272
Csp6I GTAC 1 cut(s) 726
CspAI ACCGGT 1 cut(s) 127
CviAII CATG 4 cut(s) 5, 136, 398, 437
CviJI RGCY 8 cut(s) 95, 180, 206, 254, 313, 485, 522, 668
CviKI_1 RGCY 8 cut(s) 95, 180, 206, 254, 313, 485, 522, 668
CviQI GTAC 1 cut(s) 726
DpnI GATC 4 cut(s) 249, 414, 429, 617
DpnII GATC 4 cut(s) 247, 412, 427, 615
DraI TTTAAA 1 cut(s) 220
Eam1104I CTCTTC 2 cut(s) 294, 356
EarI CTCTTC 2 cut(s) 294, 356
Eco32I GATATC 1 cut(s) 675
EcoRII CCWGG 1 cut(s) 272
EcoRV GATATC 1 cut(s) 675
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 8, 139, 401, 440
FatI CATG 4 cut(s) 4, 135, 397, 436
FbaI TGATCA 2 cut(s) 247, 615
FblI GTMKAC 1 cut(s) 635
Fnu4HI GCNGC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 183
GluI GCNGC 1 cut(s) 207
HapII CCGG 1 cut(s) 128
Hin1II CATG 4 cut(s) 8, 139, 401, 440
HinfI GANTC 3 cut(s) 80, 212, 753
HpaII CCGG 1 cut(s) 128
HphI GGTGA 2 cut(s) 185, 205
Hpy166II GTNNAC 1 cut(s) 636
Hpy188I TCNGA 1 cut(s) 412
Hpy188III TCNNGA 1 cut(s) 437
Hpy8I GTNNAC 1 cut(s) 636
HpyAV CCTTC 1 cut(s) 638
HpyCH4III ACNGT 1 cut(s) 577
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 7 cut(s) 4, 107, 209, 344, 587, 734, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 542
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 4 cut(s) 8, 139, 401, 440
Ksp22I TGATCA 2 cut(s) 247, 615
Kzo9I GATC 4 cut(s) 247, 412, 427, 615
LpnPI CCDG 5 cut(s) 54, 141, 259, 286, 582
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 743
MabI ACCWGGT 1 cut(s) 272
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 3 cut(s) 193, 571, 642
MalI GATC 4 cut(s) 249, 414, 429, 617
MboI GATC 4 cut(s) 247, 412, 427, 615
MboII GAAGA 6 cut(s) 29, 41, 311, 373, 434, 470
MlyI GAGTC 2 cut(s) 89, 762
MmeI TCCRAC 1 cut(s) 676
MnlI CCTC 4 cut(s) 70, 245, 271, 592
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 36, 598
MseI TTAA 4 cut(s) 219, 288, 335, 417
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 274
MwoI GCNNNNNNNGC 1 cut(s) 542
NdeII GATC 4 cut(s) 247, 412, 427, 615
NlaIII CATG 4 cut(s) 8, 139, 401, 440
NmuCI GTSAC 3 cut(s) 193, 571, 642
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PagI TCATGA 1 cut(s) 436
PdmI GAANNNNTTC 2 cut(s) 36, 598
PfeI GAWTC 1 cut(s) 212
PinAI ACCGGT 1 cut(s) 127
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 2 cut(s) 88, 761
PpsI GAGTC 2 cut(s) 88, 761
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PstI CTGCAG 3 cut(s) 211, 346, 589
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 727
RsaNI GTAC 1 cut(s) 726
SaqAI TTAA 4 cut(s) 219, 288, 335, 417
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 4 cut(s) 247, 412, 427, 615
SchI GAGTC 2 cut(s) 89, 762
ScrFI CCNGG 1 cut(s) 274
SexAI ACCWGGT 1 cut(s) 272
SfaNI GCATC 1 cut(s) 743
SfcI CTRYAG 3 cut(s) 207, 342, 585
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 577
TaiI ACGT 1 cut(s) 37
TaqII GACCGA 1 cut(s) 621
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 4 cut(s) 219, 288, 335, 417
Tru9I TTAA 4 cut(s) 219, 288, 335, 417
TseFI GTSAC 3 cut(s) 193, 571, 642
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 3 cut(s) 193, 571, 642
TspDTI ATGAA 4 cut(s) 33, 124, 435, 486
TspGWI ACGGA 1 cut(s) 160
XapI RAATTY 3 cut(s) 304, 385, 715
XceI RCATGY 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 635
XmnI GAANNNNTTC 2 cut(s) 36, 598
XspI CTAG 1 cut(s) 183
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.