Rmu_sc0003914.1_g000010

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003914.1
OG0000215
Physical Location & Seq
Forward (+)
40937 .. 41698
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003914.1_g000010.1.cds

Sequence Viewer

Length: 513 bp
atgattcaattattggcatatgaggtgaaaagctcaattattagtagaatcaaagaagccaaatgttttttagttatacttgactgtactccagatgcaagtaatgaggaacaaacgtctcttgtattaagaagtgtcaatgtttcggctactccaattgtggttgaagaatattttttggaattcttgaaggctgctgacacatccggtcttggactgcttaatgaacatctaactgcattgaagactcttggacttgatgtcaatgatataagaggccaagggtatgacaatggatccaacattgtttctggtggctttctccggattcttctgatgccatatcagtcttgtatttgtaaaatagatgggttgtgctggccttgccccgggccctgggtgcccggggtggcatcttatgtgaagcccgccatggtggggtgtgaacccggcccatggcgtagtacctgggagtatcgatggggatcaggggctagtgctaaccctagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

170

Amino Acids

18.5

Weight (kDa)

4.97

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 400
AccIII TCCGGA 1 cut(s) 324
AciI CCGC 1 cut(s) 429
AclWI GGATC 3 cut(s) 291, 304, 493
AcsI RAATTY 1 cut(s) 182
AfaI GTAC 2 cut(s) 88, 466
AfiI CCNNNNNNNGG 4 cut(s) 389, 396, 438, 456
AgsI TTSAA 4 cut(s) 8, 167, 190, 244
AhdI GACNNNNNGTC 1 cut(s) 260
AjnI CCWGG 2 cut(s) 395, 467
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 3 cut(s) 291, 304, 493
Ama87I CYCGRG 2 cut(s) 389, 404
Aor13HI TCCGGA 1 cut(s) 324
AoxI GGCC 4 cut(s) 277, 380, 392, 451
ApaI GGGCCC 1 cut(s) 396
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 182
AspS9I GGNCC 3 cut(s) 392, 393, 452
AsuC2I CCSGG 5 cut(s) 390, 391, 405, 406, 450
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 2 cut(s) 389, 404
BaeGI GKGCMC 2 cut(s) 396, 405
BamHI GGATCC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 400
BanII GRGCYC 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 181
BccI CCATC 2 cut(s) 362, 474
BciT130I CCWGG 2 cut(s) 397, 469
BcnI CCSGG 5 cut(s) 390, 391, 405, 406, 450
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 2 cut(s) 495, 507
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 7 cut(s) 390, 391, 397, 405, 406, 450, 469
BmeRI GACNNNNNGTC 1 cut(s) 260
BmeT110I CYCGRG 2 cut(s) 389, 404
BmgT120I GGNCC 3 cut(s) 392, 393, 452
BmiI GGNNCC 3 cut(s) 298, 394, 402
BmrFI CCNGG 7 cut(s) 390, 391, 397, 405, 406, 450, 469
BmsI GCATC 3 cut(s) 85, 327, 422
BpiI GAAGAC 1 cut(s) 251
BpmI CTGGAG 1 cut(s) 75
BpuMI CCSGG 5 cut(s) 390, 391, 405, 406, 450
Bsa29I ATCGAT 1 cut(s) 478
BsaBI GATNNNNATC 1 cut(s) 484
BsaWI WCCGGW 2 cut(s) 206, 324
Bsc4I CCNNNNNNNGG 4 cut(s) 389, 396, 438, 456
Bse8I GATNNNNATC 1 cut(s) 484
BseAI TCCGGA 1 cut(s) 324
BseBI CCWGG 2 cut(s) 397, 469
BseCI ATCGAT 1 cut(s) 478
BseGI GGATG 1 cut(s) 203
BseJI GATNNNNATC 1 cut(s) 484
BseLI CCNNNNNNNGG 4 cut(s) 389, 396, 438, 456
BseSI GKGCMC 2 cut(s) 396, 405
BseXI GCAGC 1 cut(s) 181
BshFI GGCC 4 cut(s) 279, 382, 394, 453
BshNI GGYRCC 1 cut(s) 400
BshVI ATCGAT 1 cut(s) 478
BsiHKCI CYCGRG 2 cut(s) 389, 404
BsiSI CCGG 5 cut(s) 207, 325, 390, 405, 450
BslI CCNNNNNNNGG 4 cut(s) 389, 396, 438, 456
BsmAI GTCTC 1 cut(s) 123
BsmBI CGTCTC 1 cut(s) 123
BsnI GGCC 4 cut(s) 279, 382, 394, 453
BsoBI CYCGRG 2 cut(s) 389, 404
Bsp120I GGGCCC 1 cut(s) 392
Bsp1286I GDGCHC 2 cut(s) 396, 405
Bsp13I TCCGGA 1 cut(s) 324
Bsp143I GATC 2 cut(s) 296, 485
Bsp19I CCATGG 2 cut(s) 432, 455
BspACI CCGC 1 cut(s) 429
BspANI GGCC 4 cut(s) 279, 382, 394, 453
BspDI ATCGAT 1 cut(s) 478
BspEI TCCGGA 1 cut(s) 324
BspLI GGNNCC 3 cut(s) 298, 394, 402
BspPI GGATC 3 cut(s) 291, 304, 493
BspT107I GGYRCC 1 cut(s) 400
BssMI GATC 2 cut(s) 296, 485
BssT1I CCWWGG 3 cut(s) 280, 432, 455
Bst2UI CCWGG 2 cut(s) 397, 469
Bst4CI ACNGT 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 380, 429
BstDSI CCRYGG 2 cut(s) 432, 455
BstF5I GGATG 1 cut(s) 203
BstKTI GATC 2 cut(s) 299, 488
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 296, 485
BstMWI GCNNNNNNNGC 2 cut(s) 384, 400
BstNI CCWGG 2 cut(s) 397, 469
BstSCI CCNGG 7 cut(s) 388, 389, 395, 403, 404, 448, 467
BstSLI GKGCMC 2 cut(s) 396, 405
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
Bsu15I ATCGAT 1 cut(s) 478
BsuRI GGCC 4 cut(s) 279, 382, 394, 453
BsuTUI ATCGAT 1 cut(s) 478
BtgI CCRYGG 2 cut(s) 432, 455
BtsCI GGATG 1 cut(s) 203
Cac8I GCNNGC 2 cut(s) 380, 429
Cfr13I GGNCC 3 cut(s) 392, 393, 452
Cfr9I CCCGGG 2 cut(s) 389, 404
ClaI ATCGAT 1 cut(s) 478
Csp6I GTAC 2 cut(s) 87, 465
CviAII CATG 2 cut(s) 433, 456
CviQI GTAC 2 cut(s) 87, 465
DpnI GATC 2 cut(s) 298, 487
DpnII GATC 2 cut(s) 296, 485
DriI GACNNNNNGTC 1 cut(s) 260
Eam1105I GACNNNNNGTC 1 cut(s) 260
Eco130I CCWWGG 3 cut(s) 280, 432, 455
Eco24I GRGCYC 1 cut(s) 396
Eco88I CYCGRG 2 cut(s) 389, 404
EcoO109I RGGNCCY 1 cut(s) 393
EcoRI GAATTC 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 395, 467
EcoT14I CCWWGG 3 cut(s) 280, 432, 455
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 3 cut(s) 280, 432, 455
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 2 cut(s) 436, 459
FaiI YATR 9 cut(s) 19, 21, 77, 272, 288, 343, 420, 434, 457
FatI CATG 2 cut(s) 432, 455
FauI CCCGC 1 cut(s) 436
FauNDI CATATG 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 190
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 2 cut(s) 495, 507
GluI GCNGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 4 cut(s) 279, 382, 394, 453
HapII CCGG 5 cut(s) 207, 325, 390, 405, 450
Hin1II CATG 2 cut(s) 436, 459
HinfI GANTC 4 cut(s) 4, 48, 247, 328
HpaII CCGG 5 cut(s) 207, 325, 390, 405, 450
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 3 cut(s) 92, 187, 325
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 98, 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 384, 400
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 2 cut(s) 436, 459
Kpn2I TCCGGA 1 cut(s) 324
Kzo9I GATC 2 cut(s) 296, 485
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 3 cut(s) 85, 327, 422
MaeI CTAG 2 cut(s) 495, 507
MaeII ACGT 1 cut(s) 116
MalI GATC 2 cut(s) 298, 487
MboI GATC 2 cut(s) 296, 485
MboII GAAGA 3 cut(s) 179, 256, 323
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 2 cut(s) 396, 405
MluCI AATT 4 cut(s) 8, 36, 156, 182
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 3 cut(s) 16, 100, 269
MroI TCCGGA 1 cut(s) 324
MseI TTAA 2 cut(s) 128, 222
MspI CCGG 5 cut(s) 207, 325, 390, 405, 450
MspR9I CCNGG 7 cut(s) 390, 391, 397, 405, 406, 450, 469
MunI CAATTG 1 cut(s) 156
MvaI CCWGG 2 cut(s) 397, 469
MwoI GCNNNNNNNGC 2 cut(s) 384, 400
NciI CCSGG 5 cut(s) 390, 391, 405, 406, 450
NcoI CCATGG 2 cut(s) 432, 455
NdeI CATATG 1 cut(s) 19
NdeII GATC 2 cut(s) 296, 485
NlaIII CATG 2 cut(s) 436, 459
NlaIV GGNNCC 3 cut(s) 298, 394, 402
PasI CCCWGGG 1 cut(s) 396
PfeI GAWTC 3 cut(s) 4, 48, 328
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 395, 467
PspGI CCWGG 2 cut(s) 395, 467
PspN4I GGNNCC 3 cut(s) 298, 394, 402
PspOMI GGGCCC 1 cut(s) 392
PspPI GGNCC 3 cut(s) 392, 393, 452
PsuI RGATCY 1 cut(s) 296
RsaI GTAC 2 cut(s) 88, 466
RsaNI GTAC 2 cut(s) 87, 465
SaqAI TTAA 2 cut(s) 128, 222
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 2 cut(s) 296, 485
Sau96I GGNCC 3 cut(s) 392, 393, 452
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 7 cut(s) 390, 391, 397, 405, 406, 450, 469
SduI GDGCHC 2 cut(s) 396, 405
SetI ASST 4 cut(s) 27, 35, 119, 470
SfaNI GCATC 3 cut(s) 85, 327, 422
SmaI CCCGGG 2 cut(s) 391, 406
Sse9I AATT 4 cut(s) 8, 36, 156, 182
SsiI CCGC 1 cut(s) 429
SspI AATATT 1 cut(s) 173
SspMI CTAG 2 cut(s) 495, 507
StyD4I CCNGG 7 cut(s) 388, 389, 395, 403, 404, 448, 467
StyI CCWWGG 3 cut(s) 280, 432, 455
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 478
TasI AATT 4 cut(s) 8, 36, 156, 182
TatI WGTACW 1 cut(s) 86
TfiI GAWTC 3 cut(s) 4, 48, 328
Tru1I TTAA 2 cut(s) 128, 222
Tru9I TTAA 2 cut(s) 128, 222
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 240
TspMI CCCGGG 2 cut(s) 389, 404
XapI RAATTY 1 cut(s) 182
XmaI CCCGGG 2 cut(s) 389, 404
XspI CTAG 2 cut(s) 495, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.