Rmu_sc0000483.1_g000021

Domain of unknown function (DUF4371)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000483.1
OG0000215
Physical Location & Seq
Reverse (-)
90067 .. 91143
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000483.1_g000021.1.cds

Sequence Viewer

Length: 564 bp
atgtctcctaaaagaaaatgtttatctggatatgcaaatcgtttaaagaagaaaaaagatgcagagttggttcaatctttaaggggaagtcttgataggttcattactagagaaccagaaggtttgggtgaagatttagttaatgaagaggcacaagagcacactgagagagaagataatgtggaagagcacactaatagggaaaataatgtggaagagcacactgatggcaatgaagttgtagatgatttggatcatggtgaaaatgagaatgacaagggacatgatgataatgtgaatgatgcggatgtgactcccgtgaacattttttatccaagaacttgggatagcttggataaaaagttgatagatttgctggtagaaaagggtcctcttagagatctttcaatagcgaatggccctcaagacaagttcaatagacatttcagttcaacgctggcttgtacgatggcttcaattttggggcattatggtacaagtggcaatgtgggatgcaagcagggttctgatcggcgagaggcaaaggagggatcggtcccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

187

Amino Acids

20.97

Weight (kDa)

4.91

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 305
AclWI GGATC 2 cut(s) 261, 559
AfaI GTAC 2 cut(s) 466, 496
AgsI TTSAA 5 cut(s) 74, 408, 436, 453, 477
AluBI AGCT 1 cut(s) 351
AluI AGCT 1 cut(s) 351
Alw21I GWGCWC 3 cut(s) 162, 192, 222
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 261, 559
AoxI GGCC 1 cut(s) 418
AspS9I GGNCC 3 cut(s) 389, 419, 556
AsuHPI GGTGA 2 cut(s) 140, 272
AvaII GGWCC 2 cut(s) 389, 556
BarI GAAGNNNNNNTAC 2 cut(s) 457, 489
Bbv12I GWGCWC 3 cut(s) 162, 192, 222
BccI CCATC 2 cut(s) 221, 463
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 108
BglII AGATCT 1 cut(s) 400
Bme18I GGWCC 2 cut(s) 389, 556
BmgT120I GGNCC 3 cut(s) 389, 419, 556
BmiI GGNNCC 2 cut(s) 390, 558
BmsI GCATC 3 cut(s) 49, 292, 503
BpuEI CTTGAG 1 cut(s) 408
BsaBI GATNNNNATC 1 cut(s) 252
Bse3DI GCAATG 2 cut(s) 238, 511
Bse8I GATNNNNATC 1 cut(s) 252
BseGI GGATG 2 cut(s) 313, 518
BseJI GATNNNNATC 1 cut(s) 252
BseMI GCAATG 2 cut(s) 238, 511
BseMII CTCAG 1 cut(s) 156
BshFI GGCC 1 cut(s) 420
BsiHKAI GWGCWC 3 cut(s) 162, 192, 222
BslFI GGGAC 2 cut(s) 294, 542
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 2 cut(s) 294, 542
BsnI GGCC 1 cut(s) 420
Bsp1286I GDGCHC 3 cut(s) 162, 192, 222
Bsp143I GATC 4 cut(s) 253, 400, 529, 551
BspACI CCGC 1 cut(s) 305
BspANI GGCC 1 cut(s) 420
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 390, 558
BspPI GGATC 2 cut(s) 261, 559
BspQI GCTCTTC 2 cut(s) 180, 210
BsrDI GCAATG 2 cut(s) 238, 511
BssMI GATC 4 cut(s) 253, 400, 529, 551
Bst6I CTCTTC 3 cut(s) 141, 180, 210
BstC8I GCNNGC 2 cut(s) 459, 518
BstDEI CTNAG 2 cut(s) 165, 395
BstF5I GGATG 2 cut(s) 313, 518
BstKTI GATC 4 cut(s) 256, 403, 532, 554
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 4 cut(s) 253, 400, 529, 551
BstX2I RGATCY 1 cut(s) 400
BstXI CCANNNNNNTGG 1 cut(s) 342
BstYI RGATCY 1 cut(s) 400
BsuRI GGCC 1 cut(s) 420
BtsCI GGATG 2 cut(s) 313, 518
BtsIMutI CAGTG 2 cut(s) 162, 222
Cac8I GCNNGC 2 cut(s) 459, 518
Cfr13I GGNCC 3 cut(s) 389, 419, 556
Csp6I GTAC 2 cut(s) 465, 495
CviAII CATG 2 cut(s) 257, 284
CviJI RGCY 4 cut(s) 351, 420, 461, 473
CviKI_1 RGCY 4 cut(s) 351, 420, 461, 473
CviQI GTAC 2 cut(s) 465, 495
DdeI CTNAG 2 cut(s) 165, 395
DpnI GATC 4 cut(s) 255, 402, 531, 553
DpnII GATC 4 cut(s) 253, 400, 529, 551
DraI TTTAAA 1 cut(s) 45
Eam1104I CTCTTC 3 cut(s) 141, 180, 210
EarI CTCTTC 3 cut(s) 141, 180, 210
Eco47I GGWCC 2 cut(s) 389, 556
EcoO109I RGGNCCY 1 cut(s) 389
FaeI CATG 2 cut(s) 260, 287
FaiI YATR 5 cut(s) 33, 258, 285, 492, 562
FaqI GGGAC 2 cut(s) 294, 542
FatI CATG 2 cut(s) 256, 283
FokI GGATG 2 cut(s) 320, 525
FspBI CTAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 420
Hin1II CATG 2 cut(s) 260, 287
HinfI GANTC 1 cut(s) 313
HphI GGTGA 2 cut(s) 140, 272
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 529
Hpy188III TCNNGA 3 cut(s) 27, 92, 425
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 113
HpyCH4V TGCA 3 cut(s) 35, 62, 516
HpyF3I CTNAG 2 cut(s) 165, 395
Hsp92II CATG 2 cut(s) 260, 287
Kzo9I GATC 4 cut(s) 253, 400, 529, 551
LguI GCTCTTC 2 cut(s) 180, 210
LpnPI CCDG 5 cut(s) 12, 129, 362, 443, 506
LweI GCATC 3 cut(s) 49, 292, 503
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 310
MalI GATC 4 cut(s) 255, 402, 531, 553
MboI GATC 4 cut(s) 253, 400, 529, 551
MboII GAAGA 6 cut(s) 61, 143, 158, 185, 197, 227
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 3 cut(s) 162, 192, 222
MluCI AATT 1 cut(s) 477
MlyI GAGTC 1 cut(s) 307
MnlI CCTC 5 cut(s) 142, 402, 432, 532, 541
MseI TTAA 3 cut(s) 44, 80, 141
MslI CAYNNNNRTG 1 cut(s) 225
NdeII GATC 4 cut(s) 253, 400, 529, 551
NlaIII CATG 2 cut(s) 260, 287
NlaIV GGNNCC 2 cut(s) 390, 558
NmuCI GTSAC 1 cut(s) 310
PciSI GCTCTTC 2 cut(s) 180, 210
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PpuMI RGGWCCY 1 cut(s) 389
Psp5II RGGWCCY 1 cut(s) 389
PspN4I GGNNCC 2 cut(s) 390, 558
PspPI GGNCC 3 cut(s) 389, 419, 556
PspPPI RGGWCCY 1 cut(s) 389
PsuI RGATCY 1 cut(s) 400
RsaI GTAC 2 cut(s) 466, 496
RsaNI GTAC 2 cut(s) 465, 495
RseI CAYNNNNRTG 1 cut(s) 225
SapI GCTCTTC 2 cut(s) 180, 210
SaqAI TTAA 3 cut(s) 44, 80, 141
Sau3AI GATC 4 cut(s) 253, 400, 529, 551
Sau96I GGNCC 3 cut(s) 389, 419, 556
SchI GAGTC 1 cut(s) 307
SduI GDGCHC 3 cut(s) 162, 192, 222
SetI ASST 3 cut(s) 101, 124, 353
SfaNI GCATC 3 cut(s) 49, 292, 503
SinI GGWCC 2 cut(s) 389, 556
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
Sse9I AATT 1 cut(s) 477
SsiI CCGC 1 cut(s) 305
SspMI CTAG 1 cut(s) 108
TaqII GACCGA 1 cut(s) 544
TasI AATT 1 cut(s) 477
Tru1I TTAA 3 cut(s) 44, 80, 141
Tru9I TTAA 3 cut(s) 44, 80, 141
TscAI CASTG 2 cut(s) 169, 229
TseFI GTSAC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 91, 159, 249
TspRI CASTG 2 cut(s) 169, 229
VpaK11BI GGWCC 2 cut(s) 389, 556
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.