Rmu_ssc0000386.1_g000041

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000386.1
OG0000215
Physical Location & Seq
Forward (+)
213143 .. 215669
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000386.1_g000041.1.cds

Sequence Viewer

Length: 1197 bp
atgagcaagcctcagatagggccggccctgagggctaccgcctcaggccaccggctcccgggggcctccggagtttggaatttttatgcctcccatagaaaacacaagtctggagctcagaagagaaaagaaaaggaaagacaagaagcattaactcaatctctagctggatcacttgataagtattttgggggaaacaaaaaagcagaaacgtctgttcaaaatgtggtgaatgatcaggaagatgagcataataatgaacaacatgatgaacccatgaatgctcatgagaatcatggtgaagaagaaagagagcatatgattgacactgagaatgaagatcaactcatggatgaggaagataatgatagtatggatcaagatgtcccaaatgcagatttcaatgagcaaattaactttcctttgaatgttgatgacccaggtaattgggataagattgactacaatatcagagactttttggttgaaagaggtcctcaaagagaccatgattataatttttccaaagatagtagaggcagacatttttcttcagaacatttttttcgatatttaccaaatggcgagaagcaagatcggaattggctagtgtattcagagtctctagatagaatattttgcttttgttgcaagttgtttaagaaggatgagcagaaaattaatttgggcaacatagctggtgtaggatacaaagattggaagaaccttggtcgcaggcttaaagttaagccattgtcacagacacgttgggagagtcatgttgaaagtgttaaacccataagatttcaagctcgtaaaataagagatgctttaattcacttggcaaaagttagtgaagatccgaagacaaagagtgaagccgagtcgttagcaatatttgaaatggagaactttgaattcttgcttggcatggttatttggtacaagttattatttgctatcaatactgttagcaaaattcttcaaactgaagacatgcatattgattttgccatcacagaactaaagaaacttatttcttctcttaagaattttagagaaattgggtttgatgaggccatgattgacgctaagaagattgcaaatgaaatggagattgaagctgtatttcgtgaaaagcgagtcattcggagaaagagacaatttgatgagagtgcaagtgaagaagtgacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

398

Amino Acids

46.45

Weight (kDa)

5.63

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 516
AccIII TCCGGA 1 cut(s) 68
AciI CCGC 1 cut(s) 39
AclWI GGATC 3 cut(s) 178, 384, 854
AcsI RAATTY 4 cut(s) 79, 917, 978, 1051
AcuI CTGAAG 2 cut(s) 537, 1011
AfaI GTAC 1 cut(s) 944
AfiI CCNNNNNNNGG 3 cut(s) 17, 58, 75
AflII CTTAAG 1 cut(s) 1046
AflIII ACRYGT 1 cut(s) 764
AjnI CCWGG 1 cut(s) 439
AjuI GAANNNNNNNTTGG 4 cut(s) 668, 700, 909, 941
AluBI AGCT 5 cut(s) 116, 167, 698, 812, 1124
AluI AGCT 5 cut(s) 116, 167, 698, 812, 1124
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 4 cut(s) 468, 498, 627, 1153
AlwI GGATC 3 cut(s) 178, 384, 854
Ama87I CYCGRG 1 cut(s) 58
Aor13HI TCCGGA 1 cut(s) 68
AoxI GGCC 5 cut(s) 20, 24, 46, 63, 1077
ApoI RAATTY 4 cut(s) 79, 917, 978, 1051
AseI ATTAAT 1 cut(s) 681
AspS9I GGNCC 4 cut(s) 20, 25, 63, 494
AsuC2I CCSGG 2 cut(s) 59, 60
AsuHPI GGTGA 2 cut(s) 241, 311
AvaI CYCGRG 1 cut(s) 58
AvaII GGWCC 1 cut(s) 494
AxyI CCTNAGG 2 cut(s) 29, 43
BanII GRGCYC 1 cut(s) 118
BbsI GAAGAC 2 cut(s) 872, 999
Bbv12I GWGCWC 1 cut(s) 118
BccI CCATC 1 cut(s) 1022
BciT130I CCWGG 1 cut(s) 441
BciVI GTATCC 1 cut(s) 701
BclI TGATCA 1 cut(s) 235
BcnI CCSGG 2 cut(s) 59, 60
BcoDI GTCTC 4 cut(s) 468, 498, 627, 1153
BfaI CTAG 3 cut(s) 164, 608, 626
BfrI CTTAAG 1 cut(s) 1046
BfuI GTATCC 1 cut(s) 701
BglI GCCNNNNNGGC 1 cut(s) 32
Bme1390I CCNGG 3 cut(s) 59, 60, 441
Bme18I GGWCC 1 cut(s) 494
BmeT110I CYCGRG 1 cut(s) 58
BmgT120I GGNCC 4 cut(s) 20, 25, 63, 494
BmiI GGNNCC 2 cut(s) 56, 64
BmrFI CCNGG 3 cut(s) 59, 60, 441
BmsI GCATC 1 cut(s) 817
BpiI GAAGAC 2 cut(s) 872, 999
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 132
BpuMI CCSGG 2 cut(s) 59, 60
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 4 cut(s) 58, 59, 439, 727
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 58, 75
Bse118I RCCGGY 2 cut(s) 22, 51
Bse21I CCTNAGG 2 cut(s) 29, 43
BseAI TCCGGA 1 cut(s) 68
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 4 cut(s) 58, 59, 439, 727
BseGI GGATG 2 cut(s) 358, 673
BseLI CCNNNNNNNGG 3 cut(s) 17, 58, 75
BseMII CTCAG 5 cut(s) 20, 26, 57, 131, 321
BshFI GGCC 5 cut(s) 22, 26, 48, 65, 1079
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 58
BsiSI CCGG 4 cut(s) 23, 52, 59, 69
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 3 cut(s) 17, 58, 75
BsmAI GTCTC 4 cut(s) 468, 498, 627, 1153
BsmFI GGGAC 1 cut(s) 371
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 5 cut(s) 22, 26, 48, 65, 1079
Bso31I GGTCTC 1 cut(s) 498
BsoBI CYCGRG 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 118
Bsp13I TCCGGA 1 cut(s) 68
Bsp143I GATC 6 cut(s) 170, 235, 340, 376, 595, 859
BspACI CCGC 1 cut(s) 39
BspANI GGCC 5 cut(s) 22, 26, 48, 65, 1079
BspCNI CTCAG 5 cut(s) 21, 25, 56, 130, 322
BspEI TCCGGA 1 cut(s) 68
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 56, 64
BspPI GGATC 3 cut(s) 178, 384, 854
BspTI CTTAAG 1 cut(s) 1046
BspTNI GGTCTC 1 cut(s) 498
BsrFI RCCGGY 2 cut(s) 22, 51
BssAI RCCGGY 2 cut(s) 22, 51
BssECI CCNNGG 4 cut(s) 58, 59, 439, 727
BssMI GATC 6 cut(s) 170, 235, 340, 376, 595, 859
BssT1I CCWWGG 1 cut(s) 727
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 1 cut(s) 970
Bst6I CTCTTC 1 cut(s) 116
BstAFI CTTAAG 1 cut(s) 1046
BstC8I GCNNGC 3 cut(s) 8, 24, 737
BstDEI CTNAG 6 cut(s) 12, 29, 43, 117, 330, 1092
BstENI CCTNNNNNAGG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 358, 673
BstKTI GATC 6 cut(s) 173, 238, 343, 379, 598, 862
BstMAI GTCTC 4 cut(s) 468, 498, 627, 1153
BstMBI GATC 6 cut(s) 170, 235, 340, 376, 595, 859
BstMWI GCNNNNNNNGC 2 cut(s) 32, 648
BstNI CCWGG 1 cut(s) 441
BstNSI RCATGY 1 cut(s) 1000
BstSCI CCNGG 3 cut(s) 57, 58, 439
BstV2I GAAGAC 2 cut(s) 872, 999
BstX2I RGATCY 1 cut(s) 859
BstXI CCANNNNNNTGG 1 cut(s) 447
BstYI RGATCY 1 cut(s) 859
Bsu36I CCTNAGG 2 cut(s) 29, 43
BsuI GTATCC 1 cut(s) 701
BsuRI GGCC 5 cut(s) 22, 26, 48, 65, 1079
BtsCI GGATG 2 cut(s) 358, 673
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 3 cut(s) 8, 24, 737
CciI TCATGA 1 cut(s) 286
Cfr10I RCCGGY 2 cut(s) 22, 51
Cfr13I GGNCC 4 cut(s) 20, 25, 63, 494
Cfr9I CCCGGG 1 cut(s) 58
CseI GACGC 1 cut(s) 1097
Csp6I GTAC 1 cut(s) 943
CviQI GTAC 1 cut(s) 943
DdeI CTNAG 6 cut(s) 12, 29, 43, 117, 330, 1092
DpnI GATC 6 cut(s) 172, 237, 342, 378, 597, 861
DpnII GATC 6 cut(s) 170, 235, 340, 376, 595, 859
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 727
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 498
Eco47I GGWCC 1 cut(s) 494
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 537, 1011
Eco81I CCTNAGG 2 cut(s) 29, 43
Eco88I CYCGRG 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 116
EcoNI CCTNNNNNAGG 1 cut(s) 15
EcoO109I RGGNCCY 2 cut(s) 63, 494
EcoRI GAATTC 1 cut(s) 917
EcoRII CCWGG 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 727
EcoT22I ATGCAT 1 cut(s) 1002
EcoT38I GRGCYC 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 727
FalI AAGNNNNNCTT 2 cut(s) 814, 846
FaqI GGGAC 1 cut(s) 371
FauNDI CATATG 1 cut(s) 318
FbaI TGATCA 1 cut(s) 235
FokI GGATG 2 cut(s) 365, 680
FriOI GRGCYC 1 cut(s) 118
FseI GGCCGGCC 1 cut(s) 26
FspBI CTAG 3 cut(s) 164, 608, 626
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 5 cut(s) 22, 26, 48, 65, 1079
HapII CCGG 4 cut(s) 23, 52, 59, 69
HgaI GACGC 1 cut(s) 1097
HinfI GANTC 5 cut(s) 292, 620, 775, 884, 1143
HpaII CCGG 4 cut(s) 23, 52, 59, 69
HphI GGTGA 2 cut(s) 241, 311
Hpy188I TCNGA 8 cut(s) 15, 120, 473, 556, 600, 619, 864, 1152
Hpy188III TCNNGA 7 cut(s) 69, 111, 239, 287, 380, 626, 1133
HpyAV CCTTC 1 cut(s) 658
HpyCH4III ACNGT 1 cut(s) 970
HpyCH4IV ACGT 2 cut(s) 212, 766
HpyCH4V TGCA 5 cut(s) 395, 651, 1000, 1103, 1178
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 648
HpyF3I CTNAG 6 cut(s) 12, 29, 43, 117, 330, 1092
HpySE526I ACGT 2 cut(s) 212, 766
Kpn2I TCCGGA 1 cut(s) 68
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 6 cut(s) 170, 235, 340, 376, 595, 859
LmnI GCTCC 2 cut(s) 60, 113
LweI GCATC 1 cut(s) 817
MaeI CTAG 3 cut(s) 164, 608, 626
MaeII ACGT 2 cut(s) 212, 766
MaeIII GTNAC 2 cut(s) 756, 1189
MalI GATC 6 cut(s) 172, 237, 342, 378, 597, 861
MboI GATC 6 cut(s) 170, 235, 340, 376, 595, 859
MflI RGATCY 1 cut(s) 859
MhlI GDGCHC 1 cut(s) 118
MlyI GAGTC 4 cut(s) 629, 784, 893, 1152
Mph1103I ATGCAT 1 cut(s) 1002
MroI TCCGGA 1 cut(s) 68
MroNI GCCGGC 1 cut(s) 22
MseI TTAA 9 cut(s) 152, 414, 660, 681, 741, 747, 792, 833, 1047
MslI CAYNNNNRTG 1 cut(s) 255
MspCI CTTAAG 1 cut(s) 1046
MspI CCGG 4 cut(s) 23, 52, 59, 69
MspR9I CCNGG 3 cut(s) 59, 60, 441
Mva1269I GAATGC 1 cut(s) 286
MvaI CCWGG 1 cut(s) 441
MwoI GCNNNNNNNGC 2 cut(s) 32, 648
NaeI GCCGGC 1 cut(s) 24
NciI CCSGG 2 cut(s) 59, 60
NdeI CATATG 1 cut(s) 318
NdeII GATC 6 cut(s) 170, 235, 340, 376, 595, 859
NgoMIV GCCGGC 1 cut(s) 22
NlaIV GGNNCC 2 cut(s) 56, 64
NmeAIII GCCGAG 1 cut(s) 907
NmuCI GTSAC 2 cut(s) 756, 1189
NsiI ATGCAT 1 cut(s) 1002
NspI RCATGY 1 cut(s) 1000
PagI TCATGA 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 1138
PctI GAATGC 1 cut(s) 286
PdiI GCCGGC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 292
PleI GAGTC 4 cut(s) 628, 783, 892, 1151
PpsI GAGTC 4 cut(s) 628, 783, 892, 1151
PpuMI RGGWCCY 1 cut(s) 494
PshBI ATTAAT 1 cut(s) 681
PsiI TTATAA 1 cut(s) 516
Psp124BI GAGCTC 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 494
Psp6I CCWGG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 2 cut(s) 56, 64
PspPI GGNCC 4 cut(s) 20, 25, 63, 494
PspPPI RGGWCCY 1 cut(s) 494
PsuI RGATCY 1 cut(s) 859
RigI GGCCGGCC 1 cut(s) 26
RsaI GTAC 1 cut(s) 944
RsaNI GTAC 1 cut(s) 943
RseI CAYNNNNRTG 1 cut(s) 255
SacI GAGCTC 1 cut(s) 118
SaqAI TTAA 9 cut(s) 152, 414, 660, 681, 741, 747, 792, 833, 1047
Sau3AI GATC 6 cut(s) 170, 235, 340, 376, 595, 859
Sau96I GGNCC 4 cut(s) 20, 25, 63, 494
SchI GAGTC 4 cut(s) 629, 784, 893, 1152
ScrFI CCNGG 3 cut(s) 59, 60, 441
SduI GDGCHC 1 cut(s) 118
SfaNI GCATC 1 cut(s) 817
SinI GGWCC 1 cut(s) 494
SmaI CCCGGG 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 1046
SmoI CTYRAG 1 cut(s) 1046
SsiI CCGC 1 cut(s) 39
SspI AATATT 2 cut(s) 636, 897
SspMI CTAG 3 cut(s) 164, 608, 626
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 3 cut(s) 57, 58, 439
StyI CCWWGG 1 cut(s) 727
TaaI ACNGT 1 cut(s) 970
TaiI ACGT 2 cut(s) 215, 769
TaqI TCGA 1 cut(s) 568
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 9 cut(s) 152, 414, 660, 681, 741, 747, 792, 833, 1047
Tru9I TTAA 9 cut(s) 152, 414, 660, 681, 741, 747, 792, 833, 1047
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 2 cut(s) 756, 1189
Tsp45I GTSAC 2 cut(s) 756, 1189
TspDTI ATGAA 5 cut(s) 273, 285, 293, 351, 1122
TspMI CCCGGG 1 cut(s) 58
TspRI CASTG 1 cut(s) 334
Vha464I CTTAAG 1 cut(s) 1046
VpaK11BI GGWCC 1 cut(s) 494
VspI ATTAAT 1 cut(s) 681
XagI CCTNNNNNAGG 1 cut(s) 15
XapI RAATTY 4 cut(s) 79, 917, 978, 1051
XbaI TCTAGA 1 cut(s) 625
XceI RCATGY 1 cut(s) 1000
XmaI CCCGGG 1 cut(s) 58
XspI CTAG 3 cut(s) 164, 608, 626
Zsp2I ATGCAT 1 cut(s) 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.