Rorug04G0196000

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000215
Physical Location & Seq
Forward (+)
34127164 .. 34134652
7489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0196000.1

Sequence Viewer

Length: 1416 bp
ATGACGCAACACCGCTTCCTTCTCGTCACATTCCCCGCTCAAGGCCACATCAATCCTTCCATGCAATTCGCAAAGCGTCTCATCAGCACCACGGGCGCGGACGTGACATTTTTCACGGCCACATCTGCCATTCGCCGCATAGGCAATGGCTCGTGTACTCCTCGTGGCCTGACTTTTGCTCCCTTCTCTGACGGCTATGACGACGGGTTTAAGCCCGGGGACGACATAGATCTCTACATGTCCGAGCTAAGGAGCCGTGGCTCGCGAGCTCTCGCGGATATCGTGGTGTCTAGTGCGAACGAGGGCCGCCCTTACACTTGCATAGTGTACACCATACTACTCCCTTGGGTGGCGGTAGTGGCCAGTGAACTTCACCTCCCGGCCGCGCTCGTTTGGATTCAGCCCGCCGCAGTGTTCGACATATACTACTATTATTTTAACGGCTACAAAGATCTCATCAGAAACAGTGCCACGGCTAATAATAGTGACCCTTCCCATGCAGTAGAATTACCAGGACTGCCACAATCGCTGAAGAGCCGCGACCTGCCCTCCTTCATGGTGGATTCGAATCCGTACAATTTCGCTCTCCCATTGATTGAAGAACAGTTCGAGCTGCTACGAAAAGAAAGCAAGCCAACCATCCTGGTGAACACGTTCGATGCACTTGAGCCGGAGGCGTTAAAAGCAATTGACGAGTTCAACTTGATCGGAATCGGGCCATTAATGCCATCTGCTTTCTTGGACGGCAAGGATCCATCCGATAAATCATTCGGAGGCGATCTATTCGAGAATTCAAAGAACTCAGCGTACCTAGAATGGTTGAACTCGAAGCCGAAAGAATCTGTCATCTACGTCTCGTTTGGGAGCATTTCCGTGCTGTCCAAGATTCAAATGGAGGAAATTGCAAAAGGGTTGTTGAAATCTGGTCGTCCGTTTCTGTGGGTGATTAGAGAAAACCAAAAGAACGGAGAAGGTAAGGAAGAGAAAGAAGAAGACAAACTGAGTTGCAGAGAGGAACTAGAAGAGCTTGGGATGATAGTCCCGTGGTGTTGTCAAGTGGAGGTTCTGTCAAATCCTTCATTGGGTTGTTTTGTGACACATTGTGGCTGGAATTCAAGCTTGGAGAGTTTAGTTTCTGGGGTACCGGTGGTGGCATGTCCTCAGTGGTCAGATCAATGCACTAATGCAAAATTGATAGAGGACACGTGGAAGACGGGGGTGAGGGTAGCACCGAATGAGGAAGGTGTTGTTGTGGGTGAGGAGTTGAAGAGGTGTCTGGATTTGGCCATGGGAAGTGAAGAGTTGAGAAGGAATGCTAAGAAGTGGAAGGATTTGGCGAGAGAGGCTGTTAGTGAAGGGGGGTCATCTGACAAGAATCTCAAGGCATTTTTGGAGGAGATTGGTGAAGTAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

471

Amino Acids

52.16

Weight (kDa)

4.88

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 271 - 405 1.5e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 552
Acc65I GGTACC 1 cut(s) 1141
AccB1I GGYRCC 1 cut(s) 1141
AccBSI CCGCTC 1 cut(s) 38
AccII CGCG 5 cut(s) 98, 265, 275, 386, 540
AclWI GGATC 2 cut(s) 746, 759
AcoI YGGCCR 4 cut(s) 117, 360, 381, 1284
AcsI RAATTY 2 cut(s) 790, 1111
AcuI CTGAAG 1 cut(s) 551
AcvI CACGTG 1 cut(s) 1206
AdeI CACNNNGTG 1 cut(s) 1103
AfaI GTAC 5 cut(s) 157, 329, 575, 809, 1143
AfiI CCNNNNNNNGG 4 cut(s) 41, 249, 349, 1082
AflIII ACRYGT 3 cut(s) 237, 651, 1203
AgeI ACCGGT 1 cut(s) 1144
AgsI TTSAA 8 cut(s) 599, 700, 795, 823, 890, 919, 1116, 1267
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 2 cut(s) 511, 642
AjuI GAANNNNNNNTTGG 2 cut(s) 1103, 1135
AloI GAACNNNNNNTCC 2 cut(s) 360, 392
AluBI AGCT 5 cut(s) 247, 269, 613, 1027, 1119
AluI AGCT 5 cut(s) 247, 269, 613, 1027, 1119
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 2 cut(s) 83, 859
AlwI GGATC 2 cut(s) 746, 759
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 8 cut(s) 43, 117, 166, 304, 360, 381, 716, 1284
ApeKI GCWGC 1 cut(s) 613
ApoI RAATTY 2 cut(s) 790, 1111
AseI ATTAAT 1 cut(s) 722
AsiGI ACCGGT 1 cut(s) 1144
Asp700I GAANNNNTTC 1 cut(s) 653
Asp718I GGTACC 1 cut(s) 1141
AspLEI GCGC 2 cut(s) 98, 388
AspS9I GGNCC 2 cut(s) 304, 716
AsuC2I CCSGG 3 cut(s) 216, 217, 380
AsuHPI GGTGA 6 cut(s) 365, 658, 955, 1231, 1268, 1415
AsuII TTCGAA 1 cut(s) 566
AvaI CYCGRG 1 cut(s) 215
BalI TGGCCA 2 cut(s) 362, 1286
BamHI GGATCC 1 cut(s) 751
BanI GGYRCC 1 cut(s) 1141
BanII GRGCYC 1 cut(s) 271
BauI CACGAG 2 cut(s) 151, 162
BbrPI CACGTG 1 cut(s) 1206
BbsI GAAGAC 2 cut(s) 999, 1217
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 1 cut(s) 600
BccI CCATC 3 cut(s) 647, 736, 763
BceAI ACGGC 6 cut(s) 132, 208, 240, 457, 489, 760
BciT130I CCWGG 2 cut(s) 513, 644
BcnI CCSGG 3 cut(s) 216, 217, 380
BcoDI GTCTC 2 cut(s) 83, 859
BfaI CTAG 3 cut(s) 291, 812, 1019
BfuAI ACCTGC 1 cut(s) 552
BglI GCCNNNNNGGC 1 cut(s) 141
BglII AGATCT 2 cut(s) 229, 451
BisI GCNGC 6 cut(s) 136, 307, 384, 408, 538, 614
BlsI GCNGC 6 cut(s) 137, 308, 385, 409, 539, 615
Bme1390I CCNGG 5 cut(s) 216, 217, 380, 513, 644
BmeT110I CYCGRG 1 cut(s) 215
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 304, 716
BmiI GGNNCC 3 cut(s) 254, 753, 1143
BmrFI CCNGG 5 cut(s) 216, 217, 380, 513, 644
BmsI GCATC 1 cut(s) 649
BpiI GAAGAC 2 cut(s) 999, 1217
Bpu10I CCTNAGC 1 cut(s) 248
Bpu14I TTCGAA 1 cut(s) 566
BpuEI CTTGAG 3 cut(s) 24, 686, 1364
BpuMI CCSGG 3 cut(s) 216, 217, 380
BsaAI YACGTR 1 cut(s) 1206
BsaBI GATNNNNATC 2 cut(s) 567, 710
BsaJI CCNNGG 8 cut(s) 90, 215, 216, 256, 344, 471, 1043, 1287
BsaWI WCCGGW 1 cut(s) 1144
BsaXI ACNNNNNCTCC 8 cut(s) 163, 193, 360, 390, 533, 563, 1052, 1082
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 249, 349, 1082
Bse118I RCCGGY 1 cut(s) 1144
Bse1I ACTGG 1 cut(s) 363
Bse3DI GCAATG 1 cut(s) 151
Bse8I GATNNNNATC 2 cut(s) 567, 710
BseBI CCWGG 2 cut(s) 513, 644
BseDI CCNNGG 8 cut(s) 90, 215, 216, 256, 344, 471, 1043, 1287
BseGI GGATG 3 cut(s) 639, 755, 1038
BseJI GATNNNNATC 2 cut(s) 567, 710
BseLI CCNNNNNNNGG 4 cut(s) 41, 249, 349, 1082
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 3 cut(s) 816, 992, 1175
BseNI ACTGG 1 cut(s) 363
BseRI GAGGAG 3 cut(s) 150, 1274, 1409
BseX3I CGGCCG 1 cut(s) 381
BseXI GCAGC 1 cut(s) 600
Bsh1236I CGCG 5 cut(s) 98, 265, 275, 386, 540
Bsh1285I CGRYCG 1 cut(s) 384
BshFI GGCC 8 cut(s) 45, 119, 168, 306, 362, 383, 718, 1286
BshNI GGYRCC 1 cut(s) 1141
BshTI ACCGGT 1 cut(s) 1144
BsiEI CGRYCG 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 271
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 4 cut(s) 216, 380, 671, 1145
BslFI GGGAC 2 cut(s) 233, 1025
BslI CCNNNNNNNGG 4 cut(s) 41, 249, 349, 1082
BsmAI GTCTC 2 cut(s) 83, 859
BsmBI CGTCTC 2 cut(s) 83, 859
BsmFI GGGAC 2 cut(s) 233, 1025
BsmI GAATGC 1 cut(s) 1318
BsnI GGCC 8 cut(s) 45, 119, 168, 306, 362, 383, 718, 1286
BsoBI CYCGRG 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 566
Bsp1286I GDGCHC 1 cut(s) 271
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 6 cut(s) 229, 451, 705, 751, 778, 1171
Bsp19I CCATGG 1 cut(s) 1287
Bsp68I TCGCGA 1 cut(s) 265
BspANI GGCC 8 cut(s) 45, 119, 168, 306, 362, 383, 718, 1286
BspCNI CTCAG 3 cut(s) 815, 993, 1174
BspFNI CGCG 5 cut(s) 98, 265, 275, 386, 540
BspLI GGNNCC 3 cut(s) 254, 753, 1143
BspMI ACCTGC 1 cut(s) 552
BspPI GGATC 2 cut(s) 746, 759
BspQI GCTCTTC 2 cut(s) 527, 1017
BspT104I TTCGAA 1 cut(s) 566
BspT107I GGYRCC 1 cut(s) 1141
BsrBI CCGCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 1144
BsrGI TGTACA 1 cut(s) 327
BsrI ACTGG 1 cut(s) 363
BssAI RCCGGY 1 cut(s) 1144
BssECI CCNNGG 8 cut(s) 90, 215, 216, 256, 344, 471, 1043, 1287
BssMI GATC 6 cut(s) 229, 451, 705, 751, 778, 1171
BssSI CACGAG 2 cut(s) 151, 162
BssT1I CCWWGG 2 cut(s) 344, 1287
Bst2BI CACGAG 2 cut(s) 151, 162
Bst2UI CCWGG 2 cut(s) 513, 644
Bst4CI ACNGT 2 cut(s) 467, 606
Bst6I CTCTTC 5 cut(s) 527, 975, 1017, 1262, 1293
BstAUI TGTACA 1 cut(s) 327
BstBAI YACGTR 1 cut(s) 1206
BstBI TTCGAA 1 cut(s) 566
BstC8I GCNNGC 4 cut(s) 263, 267, 405, 632
BstDEI CTNAG 5 cut(s) 248, 802, 1001, 1161, 1317
BstDSI CCRYGG 5 cut(s) 90, 256, 471, 1043, 1287
BstF5I GGATG 3 cut(s) 639, 755, 1038
BstFNI CGCG 5 cut(s) 98, 265, 275, 386, 540
BstHHI GCGC 2 cut(s) 98, 388
BstKTI GATC 6 cut(s) 232, 454, 708, 754, 781, 1174
BstMAI GTCTC 2 cut(s) 83, 859
BstMBI GATC 6 cut(s) 229, 451, 705, 751, 778, 1171
BstMCI CGRYCG 1 cut(s) 384
BstMWI GCNNNNNNNGC 8 cut(s) 93, 125, 141, 359, 526, 683, 724, 1343
BstNI CCWGG 2 cut(s) 513, 644
BstNSI RCATGY 2 cut(s) 241, 1158
BstSCI CCNGG 5 cut(s) 214, 215, 378, 511, 642
BstUI CGCG 5 cut(s) 98, 265, 275, 386, 540
BstV1I GCAGC 1 cut(s) 600
BstV2I GAAGAC 2 cut(s) 999, 1217
BstX2I RGATCY 3 cut(s) 229, 451, 751
BstYI RGATCY 3 cut(s) 229, 451, 751
BstZI CGGCCG 1 cut(s) 381
BsuRI GGCC 8 cut(s) 45, 119, 168, 306, 362, 383, 718, 1286
BtgI CCRYGG 5 cut(s) 90, 256, 471, 1043, 1287
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 3 cut(s) 639, 755, 1038
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 4 cut(s) 370, 417, 472, 1169
BtuMI TCGCGA 1 cut(s) 265
BveI ACCTGC 1 cut(s) 552
Cac8I GCNNGC 4 cut(s) 263, 267, 405, 632
CfoI GCGC 2 cut(s) 98, 388
Cfr10I RCCGGY 1 cut(s) 1144
Cfr13I GGNCC 2 cut(s) 304, 716
Cfr9I CCCGGG 1 cut(s) 215
CseI GACGC 2 cut(s) 13, 65
Csp6I GTAC 5 cut(s) 156, 328, 574, 808, 1142
CspAI ACCGGT 1 cut(s) 1144
CviAII CATG 6 cut(s) 61, 238, 497, 556, 1155, 1288
CviQI GTAC 5 cut(s) 156, 328, 574, 808, 1142
DdeI CTNAG 5 cut(s) 248, 802, 1001, 1161, 1317
DpnI GATC 6 cut(s) 231, 453, 707, 753, 780, 1173
DpnII GATC 6 cut(s) 229, 451, 705, 751, 778, 1171
DraIII CACNNNGTG 1 cut(s) 1103
EaeI YGGCCR 4 cut(s) 117, 360, 381, 1284
EagI CGGCCG 1 cut(s) 381
Eam1104I CTCTTC 5 cut(s) 527, 975, 1017, 1262, 1293
EarI CTCTTC 5 cut(s) 527, 975, 1017, 1262, 1293
Ecl136II GAGCTC 1 cut(s) 269
EclXI CGGCCG 1 cut(s) 381
Eco130I CCWWGG 2 cut(s) 344, 1287
Eco24I GRGCYC 1 cut(s) 271
Eco32I GATATC 1 cut(s) 280
Eco52I CGGCCG 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 551
Eco72I CACGTG 1 cut(s) 1206
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 269
EcoRI GAATTC 2 cut(s) 790, 1111
EcoRII CCWGG 2 cut(s) 511, 642
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 344, 1287
EcoT38I GRGCYC 1 cut(s) 271
ErhI CCWWGG 2 cut(s) 344, 1287
Esp3I CGTCTC 2 cut(s) 83, 859
FaeI CATG 6 cut(s) 64, 241, 500, 559, 1158, 1291
FaqI GGGAC 2 cut(s) 233, 1025
FatI CATG 6 cut(s) 60, 237, 496, 555, 1154, 1287
FauI CCCGC 2 cut(s) 43, 412
Fnu4HI GCNGC 6 cut(s) 136, 307, 384, 408, 538, 614
FokI GGATG 3 cut(s) 626, 742, 1045
FriOI GRGCYC 1 cut(s) 271
Fsp4HI GCNGC 6 cut(s) 136, 307, 384, 408, 538, 614
FspBI CTAG 3 cut(s) 291, 812, 1019
GlaI GCGC 2 cut(s) 97, 387
GluI GCNGC 6 cut(s) 136, 307, 384, 408, 538, 614
HaeIII GGCC 8 cut(s) 45, 119, 168, 306, 362, 383, 718, 1286
HapII CCGG 4 cut(s) 216, 380, 671, 1145
HgaI GACGC 2 cut(s) 13, 65
HhaI GCGC 2 cut(s) 98, 388
Hin1II CATG 6 cut(s) 64, 241, 500, 559, 1158, 1291
Hin6I GCGC 2 cut(s) 96, 386
HinP1I GCGC 2 cut(s) 96, 386
HindIII AAGCTT 1 cut(s) 1117
HinfI GANTC 7 cut(s) 397, 563, 568, 711, 839, 886, 1375
HpaII CCGG 4 cut(s) 216, 380, 671, 1145
HphI GGTGA 6 cut(s) 365, 658, 955, 1231, 1268, 1415
Hpy166II GTNNAC 5 cut(s) 156, 328, 330, 368, 649
Hpy188I TCNGA 8 cut(s) 190, 244, 461, 710, 760, 773, 1171, 1369
Hpy188III TCNNGA 3 cut(s) 264, 787, 1277
Hpy8I GTNNAC 5 cut(s) 156, 328, 330, 368, 649
Hpy99I CGWCG 1 cut(s) 206
HpyCH4III ACNGT 2 cut(s) 467, 606
HpyCH4IV ACGT 4 cut(s) 102, 653, 852, 1205
HpyCH4V TGCA 8 cut(s) 64, 321, 500, 662, 905, 1008, 1179, 1187
HpyF10VI GCNNNNNNNGC 8 cut(s) 93, 125, 141, 359, 526, 683, 724, 1343
HpyF3I CTNAG 5 cut(s) 248, 802, 1001, 1161, 1317
HpySE526I ACGT 4 cut(s) 102, 653, 852, 1205
Hsp92II CATG 6 cut(s) 64, 241, 500, 559, 1158, 1291
HspAI GCGC 2 cut(s) 96, 386
KpnI GGTACC 1 cut(s) 1145
Kzo9I GATC 6 cut(s) 229, 451, 705, 751, 778, 1171
LguI GCTCTTC 2 cut(s) 527, 1017
LmnI GCTCC 3 cut(s) 184, 252, 864
Lsp1109I GCAGC 1 cut(s) 600
LweI GCATC 1 cut(s) 649
MaeI CTAG 3 cut(s) 291, 812, 1019
MaeII ACGT 4 cut(s) 102, 653, 852, 1205
MaeIII GTNAC 4 cut(s) 25, 103, 485, 1093
MalI GATC 6 cut(s) 231, 453, 707, 753, 780, 1173
MbiI CCGCTC 1 cut(s) 38
MboI GATC 6 cut(s) 229, 451, 705, 751, 778, 1171
MboII GAAGA 9 cut(s) 544, 611, 992, 1001, 1004, 1034, 1222, 1279, 1310
MfeI CAATTG 1 cut(s) 687
MflI RGATCY 3 cut(s) 229, 451, 751
MhlI GDGCHC 1 cut(s) 271
MlsI TGGCCA 2 cut(s) 362, 1286
MluCI AATT 8 cut(s) 65, 506, 577, 687, 790, 900, 1111, 1190
MluNI TGGCCA 2 cut(s) 362, 1286
Mox20I TGGCCA 2 cut(s) 362, 1286
MroXI GAANNNNTTC 1 cut(s) 653
MscI TGGCCA 2 cut(s) 362, 1286
MseI TTAA 5 cut(s) 210, 438, 680, 722, 1414
MslI CAYNNNNRTG 2 cut(s) 644, 872
Msp20I TGGCCA 2 cut(s) 362, 1286
MspI CCGG 4 cut(s) 216, 380, 671, 1145
MspR9I CCNGG 5 cut(s) 216, 217, 380, 513, 644
MunI CAATTG 1 cut(s) 687
Mva1269I GAATGC 1 cut(s) 1318
MvaI CCWGG 2 cut(s) 513, 644
MvnI CGCG 5 cut(s) 98, 265, 275, 386, 540
MwoI GCNNNNNNNGC 8 cut(s) 93, 125, 141, 359, 526, 683, 724, 1343
NciI CCSGG 3 cut(s) 216, 217, 380
NcoI CCATGG 1 cut(s) 1287
NdeII GATC 6 cut(s) 229, 451, 705, 751, 778, 1171
NlaIII CATG 6 cut(s) 64, 241, 500, 559, 1158, 1291
NlaIV GGNNCC 3 cut(s) 254, 753, 1143
NmuCI GTSAC 4 cut(s) 25, 103, 485, 1093
NruI TCGCGA 1 cut(s) 265
NspI RCATGY 2 cut(s) 241, 1158
NspV TTCGAA 1 cut(s) 566
PciI ACATGT 1 cut(s) 237
PciSI GCTCTTC 2 cut(s) 527, 1017
PcsI WCGNNNNNNNCGW 2 cut(s) 198, 279
PctI GAATGC 1 cut(s) 1318
PdmI GAANNNNTTC 1 cut(s) 653
PfeI GAWTC 7 cut(s) 397, 563, 568, 711, 839, 886, 1375
PinAI ACCGGT 1 cut(s) 1144
PkrI GCNGC 6 cut(s) 137, 308, 385, 409, 539, 615
PmaCI CACGTG 1 cut(s) 1206
PmlI CACGTG 1 cut(s) 1206
Ppu21I YACGTR 1 cut(s) 1206
PscI ACATGT 1 cut(s) 237
PshBI ATTAAT 1 cut(s) 722
Psp124BI GAGCTC 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 511, 642
PspCI CACGTG 1 cut(s) 1206
PspGI CCWGG 2 cut(s) 511, 642
PspN4I GGNNCC 3 cut(s) 254, 753, 1143
PspPI GGNCC 2 cut(s) 304, 716
PsrI GAACNNNNNNTAC 2 cut(s) 791, 823
PsuI RGATCY 3 cut(s) 229, 451, 751
RruI TCGCGA 1 cut(s) 265
RsaI GTAC 5 cut(s) 157, 329, 575, 809, 1143
RsaNI GTAC 5 cut(s) 156, 328, 574, 808, 1142
RseI CAYNNNNRTG 2 cut(s) 644, 872
SacI GAGCTC 1 cut(s) 271
SapI GCTCTTC 2 cut(s) 527, 1017
SaqAI TTAA 5 cut(s) 210, 438, 680, 722, 1414
SatI GCNGC 6 cut(s) 136, 307, 384, 408, 538, 614
Sau3AI GATC 6 cut(s) 229, 451, 705, 751, 778, 1171
Sau96I GGNCC 2 cut(s) 304, 716
ScrFI CCNGG 5 cut(s) 216, 217, 380, 513, 644
SduI GDGCHC 1 cut(s) 271
SfaNI GCATC 1 cut(s) 649
SfuI TTCGAA 1 cut(s) 566
SmaI CCCGGG 1 cut(s) 217
SmiMI CAYNNNNRTG 2 cut(s) 644, 872
SmlI CTYRAG 3 cut(s) 39, 665, 1379
SmoI CTYRAG 3 cut(s) 39, 665, 1379
Sse9I AATT 8 cut(s) 65, 506, 577, 687, 790, 900, 1111, 1190
SspMI CTAG 3 cut(s) 291, 812, 1019
SstI GAGCTC 1 cut(s) 271
StyD4I CCNGG 5 cut(s) 214, 215, 378, 511, 642
StyI CCWWGG 2 cut(s) 344, 1287
TaaI ACNGT 2 cut(s) 467, 606
TaiI ACGT 4 cut(s) 105, 656, 855, 1208
TaqI TCGA 6 cut(s) 417, 566, 609, 657, 786, 827
TasI AATT 8 cut(s) 65, 506, 577, 687, 790, 900, 1111, 1190
TatI WGTACW 2 cut(s) 155, 327
TauI GCSGC 5 cut(s) 138, 309, 386, 410, 540
TfiI GAWTC 7 cut(s) 397, 563, 568, 711, 839, 886, 1375
Tru1I TTAA 5 cut(s) 210, 438, 680, 722, 1414
Tru9I TTAA 5 cut(s) 210, 438, 680, 722, 1414
TscAI CASTG 4 cut(s) 370, 417, 472, 1169
TseFI GTSAC 4 cut(s) 25, 103, 485, 1093
TseI GCWGC 1 cut(s) 613
Tsp45I GTSAC 4 cut(s) 25, 103, 485, 1093
TspDTI ATGAA 2 cut(s) 544, 1068
TspGWI ACGGA 4 cut(s) 561, 862, 921, 981
TspMI CCCGGG 1 cut(s) 215
TspRI CASTG 4 cut(s) 370, 417, 472, 1169
VspI ATTAAT 1 cut(s) 722
XapI RAATTY 2 cut(s) 790, 1111
XceI RCATGY 2 cut(s) 241, 1158
XcmI CCANNNNNNNNNTGG 1 cut(s) 889
XmaI CCCGGG 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 653
XspI CTAG 3 cut(s) 291, 812, 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.