Rw3G020480

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000215
Physical Location & Seq
Reverse (-)
23946476 .. 23949639
3164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G020480.1

Sequence Viewer

Length: 1773 bp
ATGGCTCAGAGAAAGACGGGGAAAGAGGGAGAGACCCATTTTAACAAGAGACAAAAGAAGAAGCAGGTGAGATTGAGCACAAATCAAACAATTGATAAAGAATTACAAGAGCAAATCAAGAAAGATACAGAGCATTGGAAAGAAGTCATGGTTAGGGTAATTAGTGTTATTAAACGTCTTGCTATGAATAATATAGCCTTTCGTGGAACAAATGAAAAAATCTATGAGGATTCAAATGGAAATTTCTTAGGCTTTCTTGAATCAATAGGAGAGTTTGATCCAATAATGAAGCATCATTTTCGACTCATTCAAAATAAAAATATTCATTATCATTATCTTAGTCATAAAGTACAAAATGAATTGATAGCTATGTTGGCATCAAGTGTCAAGAGTGCGATTATAAAGAAGATTAAAGAGGCTAAATATTTTTCTGTGATTCTTGATTGCACCCCTGATGCTAGTCACAAAGAGCAAATGACTTTGATAATAAGATGTGTAGATGTTGCAAGCTGCCCAATAAAAGTAGAAGAGTATTTTTTGGAGTTTTTAAATGTAGAAGATACATCGGGTTTGGGTCTTTTTAATGAACTAAAAGCTGCTCTAAGTTCTCTTGATTTAGATATTGATGATTTGAGGGGACAAGGTTATGATAATGGTTCCAATATGAGAGGAAAACACCAAGGTGTCCAGAAAAGGTTACTTGACATAAATCCTAGAGCTTTTTATATGCCATGCGGTTGTCACTCTCTTAATTTAGTACTTTGTGATATGGCAAACTCTTGTGTAAAAGGAAAATCATTTTTTGGAGCATGTCAGGCCATTTACAATGTGTTTGCTAATTCAACAAAGCGATGGAACCTTTTACTTGAATATGTAGATGAATTAACATTGAAATCTTTGTCGGCTACACGGTGGGAAAGTCGTATTGAAAGTGTGAAAGCAATAAAATCTCAATTTCCCAAAATAAAAGAAGCTTTAATCAAACTTGCTGAAATTGGTGATGCATATGATAATCATTTGAGTTGGGAAGTTGGGAAATTATTAGATGGTGAATTTTCAAGTTTTGATTTCATTTTAAGTCTGGTTATATGGCATGATATTTTGCACAAAATAAACATGGTTAGCAAAAATTTGCAGGCTAAAGATATGATTCTTGATGTTGCTAATAAAAGTTTAAAAGAGTTGATTTCATTTTTTGAAAAATATAGAGAAAATGGATTTAATTCAACTATAATTGATGCTAAAGAAATTGCAAATGAAATGGGAATTGAGCCTGTATTTCCTGTGAAGCGTAGGGTTAAAAGAAAGAGACATTTTGATGAGATTCATGATACAGATAGAGAAGAAATGAAAAATTGTTGCTTGAAACTTGAACTTGCTTTGAAACATGGTGAGGTGTCTGATATTGATGCAAAATATTTGCTTTCTGAGTTACAAGTATTGCAGGAAATGCTACCAAATGAAGCATATGAAACAAGAAACCCATGGAATTCCATTAAAATTATGGAGTTTGCAAAAAAAATGGATATGTTTCCAAATATTTTAGTTGCTTATAGGATTTTATTGACTATACATGTTACAGTGGCATCTGCAGAAATAAGTTTTTCAAAATTAAAGTTATTAAAATCTTATTTGCGGACAACAATGACTCAAGCTAGGTTGAATGGTTTAGCAATCTTGAGTATTGAAAAGAATATGTTGAAAAATATTGAGCTTGAGCACATAATTGATGATTTTGCTTCTAAAAGTGCAAGAAGAAATCATTTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

590

Amino Acids

68.06

Weight (kDa)

8.72

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 11 - 228 1.5e-20 Domain of unknown function (DUF4371)
Dimer_Tnp_hAT PF05699 497 - 566 6.9e-10 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 401
AarI CACCTGC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 55
AciI CCGC 2 cut(s) 735, 1636
AclWI GGATC 1 cut(s) 272
AcsI RAATTY 4 cut(s) 241, 1052, 1129, 1489
AfaI GTAC 2 cut(s) 351, 759
AflIII ACRYGT 1 cut(s) 1573
AleI CACNNNNGTG 1 cut(s) 681
AluBI AGCT 7 cut(s) 368, 510, 596, 719, 974, 1655, 1714
AluI AGCT 7 cut(s) 368, 510, 596, 719, 974, 1655, 1714
Alw21I GWGCWC 2 cut(s) 80, 1722
Alw26I GTCTC 3 cut(s) 26, 43, 1303
AlwI GGATC 1 cut(s) 272
AoxI GGCC 1 cut(s) 816
ApeKI GCWGC 2 cut(s) 510, 596
ApoI RAATTY 4 cut(s) 241, 1052, 1129, 1489
AsuHPI GGTGA 4 cut(s) 79, 1010, 1061, 1403
Bbv12I GWGCWC 2 cut(s) 80, 1722
BbvI GCAGC 2 cut(s) 497, 583
BccI CCATC 2 cut(s) 846, 1040
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BcoDI GTCTC 3 cut(s) 26, 43, 1303
BfaI CTAG 3 cut(s) 459, 714, 1656
BfmI CTRYAG 1 cut(s) 1590
BfuAI ACCTGC 1 cut(s) 55
BisI GCNGC 2 cut(s) 511, 597
BlsI GCNGC 2 cut(s) 512, 598
BmcAI AGTACT 1 cut(s) 759
BmiI GGNNCC 2 cut(s) 658, 857
BmsI GCATC 7 cut(s) 301, 386, 445, 991, 1228, 1399, 1595
BpuEI CTTGAG 3 cut(s) 1635, 1699, 1736
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 679, 1484
BseDI CCNNGG 2 cut(s) 679, 1484
BseMII CTCAG 2 cut(s) 20, 1419
BseXI GCAGC 2 cut(s) 497, 583
BshFI GGCC 1 cut(s) 818
BsiHKAI GWGCWC 2 cut(s) 80, 1722
BslFI GGGAC 1 cut(s) 651
BsmAI GTCTC 3 cut(s) 26, 43, 1303
BsmFI GGGAC 1 cut(s) 651
BsnI GGCC 1 cut(s) 818
Bso31I GGTCTC 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 80, 1722
Bsp143I GATC 1 cut(s) 277
Bsp19I CCATGG 1 cut(s) 1484
BspACI CCGC 2 cut(s) 735, 1636
BspANI GGCC 1 cut(s) 818
BspCNI CTCAG 2 cut(s) 19, 1420
BspHI TCATGA 1 cut(s) 1327
BspLI GGNNCC 2 cut(s) 658, 857
BspMAI CTGCAG 1 cut(s) 1594
BspMI ACCTGC 1 cut(s) 55
BspPI GGATC 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 679, 1484
BssMI GATC 1 cut(s) 277
BssT1I CCWWGG 2 cut(s) 679, 1484
Bst4CI ACNGT 2 cut(s) 912, 1582
Bst6I CTCTTC 1 cut(s) 522
BstAPI GCANNNNNTGC 1 cut(s) 1450
BstC8I GCNNGC 2 cut(s) 508, 1137
BstDEI CTNAG 5 cut(s) 6, 247, 338, 602, 1428
BstDSI CCRYGG 1 cut(s) 1484
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 3 cut(s) 26, 43, 1303
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 3 cut(s) 374, 815, 1450
BstNSI RCATGY 2 cut(s) 813, 1577
BstSFI CTRYAG 1 cut(s) 1590
BstV1I GCAGC 2 cut(s) 497, 583
BsuRI GGCC 1 cut(s) 818
BtgI CCRYGG 1 cut(s) 1484
BtgZI GCGATG 1 cut(s) 865
BtsIMutI CAGTG 1 cut(s) 1587
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 508, 1137
CciI TCATGA 1 cut(s) 1327
Csp6I GTAC 2 cut(s) 350, 758
CviAII CATG 9 cut(s) 148, 732, 810, 1094, 1117, 1328, 1388, 1485, 1574
CviQI GTAC 2 cut(s) 350, 758
DdeI CTNAG 5 cut(s) 6, 247, 338, 602, 1428
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
DraI TTTAAA 2 cut(s) 549, 1176
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
Eco130I CCWWGG 2 cut(s) 679, 1484
Eco31I GGTCTC 1 cut(s) 26
EcoRI GAATTC 1 cut(s) 1489
EcoT14I CCWWGG 2 cut(s) 679, 1484
EcoT22I ATGCAT 1 cut(s) 1006
ErhI CCWWGG 2 cut(s) 679, 1484
FaeI CATG 9 cut(s) 151, 735, 813, 1097, 1120, 1331, 1391, 1488, 1577
FaqI GGGAC 1 cut(s) 651
FatI CATG 9 cut(s) 147, 731, 809, 1093, 1116, 1327, 1387, 1484, 1573
FauNDI CATATG 2 cut(s) 1006, 1468
Fnu4HI GCNGC 2 cut(s) 511, 597
Fsp4HI GCNGC 2 cut(s) 511, 597
FspBI CTAG 3 cut(s) 459, 714, 1656
GluI GCNGC 2 cut(s) 511, 597
HaeIII GGCC 1 cut(s) 818
Hin1II CATG 9 cut(s) 151, 735, 813, 1097, 1120, 1331, 1391, 1488, 1577
HindIII AAGCTT 1 cut(s) 972
HinfI GANTC 7 cut(s) 230, 260, 303, 436, 1150, 1324, 1648
HphI GGTGA 4 cut(s) 79, 1010, 1061, 1403
Hpy188I TCNGA 3 cut(s) 9, 1402, 1429
Hpy188III TCNNGA 9 cut(s) 118, 257, 388, 440, 611, 688, 1154, 1328, 1678
HpyCH4III ACNGT 2 cut(s) 912, 1582
HpyCH4IV ACGT 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 3 cut(s) 374, 815, 1450
HpyF3I CTNAG 5 cut(s) 6, 247, 338, 602, 1428
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 9 cut(s) 151, 735, 813, 1097, 1120, 1331, 1391, 1488, 1577
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 806
LpnPI CCDG 9 cut(s) 50, 465, 701, 800, 1067, 1121, 1287, 1296, 1430
Lsp1109I GCAGC 2 cut(s) 497, 583
LweI GCATC 7 cut(s) 301, 386, 445, 991, 1228, 1399, 1595
MaeI CTAG 3 cut(s) 459, 714, 1656
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 5 cut(s) 461, 696, 740, 1431, 1576
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 6 cut(s) 70, 418, 539, 569, 1355, 1767
MfeI CAATTG 1 cut(s) 90
MhlI GDGCHC 2 cut(s) 80, 1722
MlyI GAGTC 2 cut(s) 297, 1642
MnlI CCTC 6 cut(s) 19, 220, 409, 627, 662, 1387
Mph1103I ATGCAT 1 cut(s) 1006
MslI CAYNNNNRTG 2 cut(s) 681, 1317
MunI CAATTG 1 cut(s) 90
MwoI GCNNNNNNNGC 3 cut(s) 374, 815, 1450
NcoI CCATGG 1 cut(s) 1484
NdeI CATATG 2 cut(s) 1006, 1468
NdeII GATC 1 cut(s) 277
NlaIII CATG 9 cut(s) 151, 735, 813, 1097, 1120, 1331, 1391, 1488, 1577
NlaIV GGNNCC 2 cut(s) 658, 857
NmuCI GTSAC 2 cut(s) 461, 740
NsiI ATGCAT 1 cut(s) 1006
NspI RCATGY 2 cut(s) 813, 1577
OliI CACNNNNGTG 1 cut(s) 681
PagI TCATGA 1 cut(s) 1327
PaqCI CACCTGC 1 cut(s) 55
PciI ACATGT 1 cut(s) 1573
PfeI GAWTC 5 cut(s) 230, 260, 436, 1150, 1324
PkrI GCNGC 2 cut(s) 512, 598
PleI GAGTC 2 cut(s) 297, 1642
PpsI GAGTC 2 cut(s) 297, 1642
PscI ACATGT 1 cut(s) 1573
PsiI TTATAA 1 cut(s) 401
PspN4I GGNNCC 2 cut(s) 658, 857
PstI CTGCAG 1 cut(s) 1594
RsaI GTAC 2 cut(s) 351, 759
RsaNI GTAC 2 cut(s) 350, 758
RseI CAYNNNNRTG 2 cut(s) 681, 1317
SatI GCNGC 2 cut(s) 511, 597
Sau3AI GATC 1 cut(s) 277
ScaI AGTACT 1 cut(s) 759
SchI GAGTC 2 cut(s) 297, 1642
SduI GDGCHC 2 cut(s) 80, 1722
SfaNI GCATC 7 cut(s) 301, 386, 445, 991, 1228, 1399, 1595
SfcI CTRYAG 1 cut(s) 1590
SmiMI CAYNNNNRTG 2 cut(s) 681, 1317
SmlI CTYRAG 3 cut(s) 1650, 1678, 1715
SmoI CTYRAG 3 cut(s) 1650, 1678, 1715
SsiI CCGC 2 cut(s) 735, 1636
SspI AATATT 5 cut(s) 322, 425, 1418, 1540, 1708
SspMI CTAG 3 cut(s) 459, 714, 1656
StyI CCWWGG 2 cut(s) 679, 1484
TaaI ACNGT 2 cut(s) 912, 1582
TaiI ACGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 301
TatI WGTACW 2 cut(s) 349, 757
TfiI GAWTC 5 cut(s) 230, 260, 436, 1150, 1324
TscAI CASTG 1 cut(s) 1587
TseFI GTSAC 2 cut(s) 461, 740
TseI GCWGC 2 cut(s) 510, 596
Tsp45I GTSAC 2 cut(s) 461, 740
TspRI CASTG 1 cut(s) 1587
XapI RAATTY 4 cut(s) 241, 1052, 1129, 1489
XceI RCATGY 2 cut(s) 813, 1577
XcmI CCANNNNNNNNNTGG 1 cut(s) 1501
XspI CTAG 3 cut(s) 459, 714, 1656
ZrmI AGTACT 1 cut(s) 759
Zsp2I ATGCAT 1 cut(s) 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.