Rmu_sc0004402.1_g000017

Domain of unknown function (DUF4371)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004402.1
OG0000215
Physical Location & Seq
Reverse (-)
65725 .. 67860
2136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004402.1_g000017.1.cds

Sequence Viewer

Length: 1146 bp
atgcctcctaaaagaaaaagtttatctggacatgcaaaatgtttaaagaagaaaaaagatgtagagttggttaactctttaagaggaagtcttgataggttcattactaaagaaccagaaggtttgggcggagatttagttaatgaagtggtggaagagcacactgatagggaagataatgtggaagaccacattcatacggaagataatgtggaagagcacactgatggcaatgtagttgtcaataatttgggtcatgatgaaaatgagaatggtacgggagataatgataatgtcaatgatgctcccgtgaatatttttgacccaagaaattgggatggtttggataaaaagttgatagattggttggtagaaaagggttctcttagagatctttcaatagaaaatggtccttcagacaagttcaatagacgcttcagttcaaaattcgacactcggtttttaggaaatggagagaaatatgatagagagtggctagtgtactcaaaggaacttgataaggttttttgtttttgttgcaagttgtttaagaaggggccaatgcgaggttctacaaagcgatggcagattttgaaagataacctaaaagggttcactctcaaatcattatccactacgcattgggagagtcgtactcaaagtgttaagcctctacgattcaacgttgttgaaataagagaagcattacttcaattggcagaaattaacaaggatcccaaaattaaaagtggtgcaaagtcaatagcaactaatgatctgggagactttgagtttttgctaagcatggtgatttggtatgagatcttgtttgcttttaatagggttagcaaagtgctgcagtctaatgatatgcaaattagtgttgctatagctgaagtaaaaggtctaattgcttggcttgataagtttagagaaactggcttcacagatgcaatgactactgctaaagaaattgctactgcgttagatgttgatcctatttttctagaaaagcgtctaattcaaagaaaaatattttttgatgaaagcgggagtgagccatctccatcatcttcaagtgaggaatcttttagagtgcattatttcttacatattgtagatcaagctaagggatcattaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

381

Amino Acids

43.48

Weight (kDa)

5.63

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 129, 1050
AclI AACGTT 1 cut(s) 684
AclWI GGATC 4 cut(s) 728, 741, 989, 1141
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 3 cut(s) 399, 421, 915
AfaI GTAC 3 cut(s) 277, 503, 655
AfiI CCNNNNNNNGG 1 cut(s) 566
AgsI TTSAA 9 cut(s) 399, 427, 444, 595, 682, 692, 713, 1025, 1077
AjuI GAANNNNNNNTTGG 2 cut(s) 553, 585
AluBI AGCT 2 cut(s) 893, 1127
AluI AGCT 2 cut(s) 893, 1127
Alw21I GWGCWC 2 cut(s) 162, 222
Alw26I GTCTC 1 cut(s) 777
AlwI GGATC 4 cut(s) 728, 741, 989, 1141
AoxI GGCC 1 cut(s) 557
ApeKI GCWGC 1 cut(s) 856
ApoI RAATTY 1 cut(s) 446
AspS9I GGNCC 2 cut(s) 410, 557
AsuHPI GGTGA 1 cut(s) 820
AvaII GGWCC 1 cut(s) 410
BamHI GGATCC 1 cut(s) 733
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 2 cut(s) 162, 222
BbvI GCAGC 1 cut(s) 843
BccI CCATC 5 cut(s) 221, 332, 576, 1069, 1075
BcoDI GTCTC 1 cut(s) 777
BfaI CTAG 2 cut(s) 497, 1007
BfmI CTRYAG 2 cut(s) 857, 888
BglII AGATCT 2 cut(s) 391, 822
BisI GCNGC 1 cut(s) 857
BlpI GCTNAGC 1 cut(s) 800
BlsI GCNGC 1 cut(s) 858
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 410, 557
BmiI GGNNCC 2 cut(s) 558, 735
BmsI GCATC 2 cut(s) 292, 940
BpiI GAAGAC 1 cut(s) 192
BplI GAGNNNNNCTC 2 cut(s) 640, 672
Bpu10I CCTNAGC 1 cut(s) 1128
Bpu1102I GCTNAGC 1 cut(s) 800
BsaBI GATNNNNATC 1 cut(s) 993
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 566
Bse1I ACTGG 1 cut(s) 943
Bse3DI GCAATG 2 cut(s) 238, 960
Bse8I GATNNNNATC 1 cut(s) 993
BseGI GGATG 1 cut(s) 343
BseJI GATNNNNATC 1 cut(s) 993
BseLI CCNNNNNNNGG 1 cut(s) 566
BseMI GCAATG 2 cut(s) 238, 960
BseNI ACTGG 1 cut(s) 943
BseXI GCAGC 1 cut(s) 843
BshFI GGCC 1 cut(s) 559
BsiHKAI GWGCWC 2 cut(s) 162, 222
BslI CCNNNNNNNGG 1 cut(s) 566
BsmAI GTCTC 1 cut(s) 777
BsnI GGCC 1 cut(s) 559
Bsp1286I GDGCHC 2 cut(s) 162, 222
Bsp143I GATC 7 cut(s) 391, 733, 775, 822, 994, 1120, 1133
Bsp1720I GCTNAGC 1 cut(s) 800
BspACI CCGC 2 cut(s) 129, 1050
BspANI GGCC 1 cut(s) 559
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 558, 735
BspMAI CTGCAG 1 cut(s) 861
BspPI GGATC 4 cut(s) 728, 741, 989, 1141
BspQI GCTCTTC 2 cut(s) 150, 210
BsrDI GCAATG 2 cut(s) 238, 960
BsrI ACTGG 1 cut(s) 943
BssMI GATC 7 cut(s) 391, 733, 775, 822, 994, 1120, 1133
Bst6I CTCTTC 2 cut(s) 150, 210
BstDEI CTNAG 3 cut(s) 386, 800, 1128
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 7 cut(s) 394, 736, 778, 825, 997, 1123, 1136
BstMAI GTCTC 1 cut(s) 777
BstMBI GATC 7 cut(s) 391, 733, 775, 822, 994, 1120, 1133
BstNSI RCATGY 1 cut(s) 35
BstSFI CTRYAG 2 cut(s) 857, 888
BstV1I GCAGC 1 cut(s) 843
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 3 cut(s) 391, 733, 822
BstXI CCANNNNNNTGG 1 cut(s) 333
BstYI RGATCY 3 cut(s) 391, 733, 822
BsuRI GGCC 1 cut(s) 559
BtgZI GCGATG 1 cut(s) 595
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 2 cut(s) 162, 222
CciI TCATGA 1 cut(s) 256
Cfr13I GGNCC 2 cut(s) 410, 557
CseI GACGC 2 cut(s) 441, 1004
Csp6I GTAC 3 cut(s) 276, 502, 654
CviAII CATG 3 cut(s) 32, 257, 805
CviJI RGCY 8 cut(s) 496, 559, 670, 893, 919, 942, 1060, 1127
CviKI_1 RGCY 8 cut(s) 496, 559, 670, 893, 919, 942, 1060, 1127
CviQI GTAC 3 cut(s) 276, 502, 654
DdeI CTNAG 3 cut(s) 386, 800, 1128
DpnI GATC 7 cut(s) 393, 735, 777, 824, 996, 1122, 1135
DpnII GATC 7 cut(s) 391, 733, 775, 822, 994, 1120, 1133
DraI TTTAAA 1 cut(s) 45
Eam1104I CTCTTC 2 cut(s) 150, 210
EarI CTCTTC 2 cut(s) 150, 210
EciI GGCGGA 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 410
Eco57I CTGAAG 3 cut(s) 399, 421, 915
FaeI CATG 3 cut(s) 35, 260, 808
FaiI YATR 9 cut(s) 33, 198, 258, 483, 806, 819, 872, 890, 1113
FalI AAGNNNNNCTT 2 cut(s) 693, 725
FatI CATG 3 cut(s) 31, 256, 804
FauI CCCGC 1 cut(s) 1043
Fnu4HI GCNGC 1 cut(s) 857
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 857
FspBI CTAG 2 cut(s) 497, 1007
GluI GCNGC 1 cut(s) 857
HaeIII GGCC 1 cut(s) 559
HgaI GACGC 2 cut(s) 441, 1004
Hin1II CATG 3 cut(s) 35, 260, 808
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 3 cut(s) 649, 678, 1085
HpaI GTTAAC 1 cut(s) 73
HphI GGTGA 1 cut(s) 820
Hpy166II GTNNAC 3 cut(s) 73, 502, 615
Hpy188I TCNGA 1 cut(s) 418
Hpy188III TCNNGA 4 cut(s) 27, 92, 257, 1007
Hpy8I GTNNAC 3 cut(s) 73, 502, 615
HpyAV CCTTC 3 cut(s) 113, 423, 547
HpyCH4IV ACGT 1 cut(s) 684
HpyCH4V TGCA 7 cut(s) 35, 540, 755, 859, 874, 953, 1099
HpyF3I CTNAG 3 cut(s) 386, 800, 1128
HpySE526I ACGT 1 cut(s) 684
Hsp92II CATG 3 cut(s) 35, 260, 808
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 7 cut(s) 391, 733, 775, 822, 994, 1120, 1133
LguI GCTCTTC 2 cut(s) 150, 210
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 4 cut(s) 12, 129, 764, 924
Lsp1109I GCAGC 1 cut(s) 843
LweI GCATC 2 cut(s) 292, 940
MaeI CTAG 2 cut(s) 497, 1007
MaeII ACGT 1 cut(s) 684
MalI GATC 7 cut(s) 393, 735, 777, 824, 996, 1122, 1135
MboI GATC 7 cut(s) 391, 733, 775, 822, 994, 1120, 1133
MboII GAAGA 7 cut(s) 61, 167, 185, 197, 215, 227, 1065
MfeI CAATTG 1 cut(s) 713
MflI RGATCY 3 cut(s) 391, 733, 822
MhlI GDGCHC 2 cut(s) 162, 222
MlyI GAGTC 1 cut(s) 658
MnlI CCTC 5 cut(s) 15, 77, 560, 681, 1075
MslI CAYNNNNRTG 1 cut(s) 225
MunI CAATTG 1 cut(s) 713
NdeII GATC 7 cut(s) 391, 733, 775, 822, 994, 1120, 1133
NlaIII CATG 3 cut(s) 35, 260, 808
NlaIV GGNNCC 2 cut(s) 558, 735
NspI RCATGY 1 cut(s) 35
PagI TCATGA 1 cut(s) 256
PciSI GCTCTTC 2 cut(s) 150, 210
PfeI GAWTC 2 cut(s) 678, 1085
PkrI GCNGC 1 cut(s) 858
PleI GAGTC 1 cut(s) 657
PpsI GAGTC 1 cut(s) 657
Psp1406I AACGTT 1 cut(s) 684
PspN4I GGNNCC 2 cut(s) 558, 735
PspPI GGNCC 2 cut(s) 410, 557
PstI CTGCAG 1 cut(s) 861
PsuI RGATCY 3 cut(s) 391, 733, 822
RsaI GTAC 3 cut(s) 277, 503, 655
RsaNI GTAC 3 cut(s) 276, 502, 654
RseI CAYNNNNRTG 1 cut(s) 225
SapI GCTCTTC 2 cut(s) 150, 210
SatI GCNGC 1 cut(s) 857
Sau3AI GATC 7 cut(s) 391, 733, 775, 822, 994, 1120, 1133
Sau96I GGNCC 2 cut(s) 410, 557
SchI GAGTC 1 cut(s) 658
SduI GDGCHC 2 cut(s) 162, 222
SetI ASST 9 cut(s) 101, 124, 525, 571, 606, 687, 895, 907, 1129
SfaNI GCATC 2 cut(s) 292, 940
SfcI CTRYAG 2 cut(s) 857, 888
SinI GGWCC 1 cut(s) 410
SmiMI CAYNNNNRTG 1 cut(s) 225
SsiI CCGC 2 cut(s) 129, 1050
SspI AATATT 2 cut(s) 316, 1035
SspMI CTAG 2 cut(s) 497, 1007
TaiI ACGT 1 cut(s) 687
TaqI TCGA 1 cut(s) 450
TatI WGTACW 1 cut(s) 501
TfiI GAWTC 2 cut(s) 678, 1085
TscAI CASTG 2 cut(s) 169, 229
TseI GCWGC 1 cut(s) 856
TspDTI ATGAA 5 cut(s) 91, 159, 185, 276, 1059
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 2 cut(s) 169, 229
VpaK11BI GGWCC 1 cut(s) 410
XapI RAATTY 1 cut(s) 446
XbaI TCTAGA 1 cut(s) 1006
XceI RCATGY 1 cut(s) 35
XspI CTAG 2 cut(s) 497, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.