Rw1G016740

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000215
Physical Location & Seq
Reverse (-)
37267063 .. 37269538
2476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G016740.1

Sequence Viewer

Length: 942 bp
ATGGCTCCTACTAGAAAATTTCAATCTGGCCACGAGAAACGAGTGAAAAAGAGAAAAGCCGAACAATTTTTGGAATCCCAAAGAGGAGCACTAGATAGATTTATTGTTAAACAACCTCAGAATCAAGGAAGTGCAGATATAGTGAATAAAGAACAAACTGATGTTGTTGAGGAAGTAGATGATACCGATATCAATGTTGAAGAAGATGTAGATGATCTTGGCCATAGTGATAGTGATCACAATGAAATTTTTGATGATGAAGAATTTGATAGTGATGGGTATGAAGATGAGTTGCAAGATGTATTAAAAAGTCTTGATCTTGATATCGACAATGTAAGAGGGCAAGGATATGACAATGGATCAAATATGAGAGGAAAACACCAAGGTGTACAAAAGAAACTCTTAGAGATAAATCCTAGAGCATTTTACACACCATCTAATTCTCTGGCAACAAATGAACTTGGGAATTTCGAGTTTTTACTAGGCATGGTCATTTGGTATGACATTTTGGTCGAAGTTAACATAGTTAGCAAGAAACTACAGTCTGCAAACATGCTTATTGATGTCGCTATGGATTTAGTACAAAAGTTGATTAGTTTTTTTGAAGAATACAGAGAAACAGGCTTTTCACAAGCAATGACTAGAGCTAAAGAAATTGCAGCTAGAATGGAAGTTGATCCCGTCTTTCCTGAAAAAAGACAAATACCTCCTCCTGAATCTGCTGAAGAATCCTTTCGAGTACACTATTTTTTATTCATAATTGATCAAGCTATTGGTTCTTTGAAGAGAAGGTTTGAACAATATCAAGAATATGAGGATATTTTTGGGTTCCTATTTACATCAGATAAAGAGAAGTTTTTCAAAACTAAAACTATTAAAATCTTATTTGAGGTCAACCATGTTGCAGAAGAGATTAAATGGATTAGCTCTGATCTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

313

Amino Acids

36.29

Weight (kDa)

4.66

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 509
AclWI GGATC 2 cut(s) 367, 671
AcoI YGGCCR 2 cut(s) 28, 220
AcsI RAATTY 4 cut(s) 17, 246, 263, 466
AcuI CTGAAG 1 cut(s) 744
AfaI GTAC 3 cut(s) 390, 582, 741
AgsI TTSAA 6 cut(s) 23, 200, 605, 784, 797, 862
AleI CACNNNNGTG 1 cut(s) 384
AluBI AGCT 4 cut(s) 647, 662, 770, 927
AluI AGCT 4 cut(s) 647, 662, 770, 927
Alw21I GWGCWC 1 cut(s) 91
AlwI GGATC 2 cut(s) 367, 671
AoxI GGCC 2 cut(s) 28, 220
ApeKI GCWGC 1 cut(s) 659
ApoI RAATTY 4 cut(s) 17, 246, 263, 466
Asp700I GAANNNNTTC 2 cut(s) 732, 857
BalI TGGCCA 2 cut(s) 30, 222
BauI CACGAG 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 671
BccI CCATC 2 cut(s) 269, 442
BclI TGATCA 2 cut(s) 235, 763
BfaI CTAG 6 cut(s) 12, 92, 417, 482, 642, 663
BfmI CTRYAG 1 cut(s) 539
BisI GCNGC 1 cut(s) 660
BlsI GCNGC 1 cut(s) 661
BmiI GGNNCC 2 cut(s) 6, 830
BsaBI GATNNNNATC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 642
Bse8I GATNNNNATC 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 382
BseJI GATNNNNATC 1 cut(s) 234
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 1 cut(s) 131
BseRI GAGGAG 2 cut(s) 99, 699
BseXI GCAGC 1 cut(s) 671
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 2 cut(s) 30, 222
BsiHKAI GWGCWC 1 cut(s) 91
BsnI GGCC 2 cut(s) 30, 222
Bsp1286I GDGCHC 1 cut(s) 91
Bsp1407I TGTACA 1 cut(s) 388
Bsp143I GATC 7 cut(s) 214, 235, 316, 359, 676, 763, 931
BspANI GGCC 2 cut(s) 30, 222
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 6, 830
BspPI GGATC 2 cut(s) 367, 671
BsrDI GCAATG 1 cut(s) 642
BsrGI TGTACA 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 7 cut(s) 214, 235, 316, 359, 676, 763, 931
BssSI CACGAG 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 382
Bst2BI CACGAG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 543
Bst6I CTCTTC 2 cut(s) 779, 903
BstAUI TGTACA 1 cut(s) 388
BstDEI CTNAG 2 cut(s) 117, 403
BstKTI GATC 7 cut(s) 217, 238, 319, 362, 679, 766, 934
BstMBI GATC 7 cut(s) 214, 235, 316, 359, 676, 763, 931
BstNSI RCATGY 1 cut(s) 556
BstSFI CTRYAG 1 cut(s) 539
BstV1I GCAGC 1 cut(s) 671
BsuRI GGCC 2 cut(s) 30, 222
Csp6I GTAC 3 cut(s) 389, 581, 740
CviAII CATG 3 cut(s) 487, 553, 899
CviJI RGCY 9 cut(s) 5, 30, 59, 222, 624, 647, 662, 770, 927
CviKI_1 RGCY 9 cut(s) 5, 30, 59, 222, 624, 647, 662, 770, 927
CviQI GTAC 3 cut(s) 389, 581, 740
DdeI CTNAG 2 cut(s) 117, 403
DpnI GATC 7 cut(s) 216, 237, 318, 361, 678, 765, 933
DpnII GATC 7 cut(s) 214, 235, 316, 359, 676, 763, 931
DrdI GACNNNNNNGTC 1 cut(s) 509
DseDI GACNNNNNNGTC 1 cut(s) 509
EaeI YGGCCR 2 cut(s) 28, 220
Eam1104I CTCTTC 2 cut(s) 779, 903
EarI CTCTTC 2 cut(s) 779, 903
Eco130I CCWWGG 1 cut(s) 382
Eco32I GATATC 2 cut(s) 190, 325
Eco57I CTGAAG 1 cut(s) 744
EcoRV GATATC 2 cut(s) 190, 325
EcoT14I CCWWGG 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 3 cut(s) 490, 556, 902
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FatI CATG 3 cut(s) 486, 552, 898
FbaI TGATCA 2 cut(s) 235, 763
Fnu4HI GCNGC 1 cut(s) 660
Fsp4HI GCNGC 1 cut(s) 660
FspBI CTAG 6 cut(s) 12, 92, 417, 482, 642, 663
GluI GCNGC 1 cut(s) 660
HaeIII GGCC 2 cut(s) 30, 222
Hin1II CATG 3 cut(s) 490, 556, 902
HincII GTYRAC 2 cut(s) 520, 895
HindII GTYRAC 2 cut(s) 520, 895
HinfI GANTC 4 cut(s) 74, 121, 716, 728
HpaI GTTAAC 1 cut(s) 520
Hpy166II GTNNAC 4 cut(s) 389, 520, 742, 895
Hpy188I TCNGA 3 cut(s) 120, 844, 931
Hpy188III TCNNGA 5 cut(s) 314, 320, 689, 713, 806
Hpy8I GTNNAC 4 cut(s) 389, 520, 742, 895
HpyAV CCTTC 1 cut(s) 783
HpyCH4III ACNGT 1 cut(s) 543
HpyCH4V TGCA 5 cut(s) 134, 295, 548, 659, 905
HpyF3I CTNAG 2 cut(s) 117, 403
Hsp92II CATG 3 cut(s) 490, 556, 902
Ksp22I TGATCA 2 cut(s) 235, 763
KspAI GTTAAC 1 cut(s) 520
Kzo9I GATC 7 cut(s) 214, 235, 316, 359, 676, 763, 931
LmnI GCTCC 2 cut(s) 10, 86
LpnPI CCDG 5 cut(s) 12, 431, 606, 702, 726
Lsp1109I GCAGC 1 cut(s) 671
MaeI CTAG 6 cut(s) 12, 92, 417, 482, 642, 663
MalI GATC 7 cut(s) 216, 237, 318, 361, 678, 765, 933
MboI GATC 7 cut(s) 214, 235, 316, 359, 676, 763, 931
MboII GAAGA 8 cut(s) 212, 215, 272, 296, 617, 737, 796, 920
MfeI CAATTG 1 cut(s) 937
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 2 cut(s) 30, 222
MluCI AATT 9 cut(s) 17, 65, 246, 263, 439, 466, 654, 759, 937
MluNI TGGCCA 2 cut(s) 30, 222
MnlI CCTC 9 cut(s) 77, 126, 163, 332, 365, 717, 720, 808, 883
Mox20I TGGCCA 2 cut(s) 30, 222
MroXI GAANNNNTTC 2 cut(s) 732, 857
MscI TGGCCA 2 cut(s) 30, 222
MseI TTAA 5 cut(s) 108, 305, 519, 876, 915
MslI CAYNNNNRTG 1 cut(s) 384
Msp20I TGGCCA 2 cut(s) 30, 222
MunI CAATTG 1 cut(s) 937
NdeII GATC 7 cut(s) 214, 235, 316, 359, 676, 763, 931
NlaIII CATG 3 cut(s) 490, 556, 902
NlaIV GGNNCC 2 cut(s) 6, 830
NspI RCATGY 1 cut(s) 556
OliI CACNNNNGTG 1 cut(s) 384
PdmI GAANNNNTTC 2 cut(s) 732, 857
PfeI GAWTC 4 cut(s) 74, 121, 716, 728
PkrI GCNGC 1 cut(s) 661
PspN4I GGNNCC 2 cut(s) 6, 830
RsaI GTAC 3 cut(s) 390, 582, 741
RsaNI GTAC 3 cut(s) 389, 581, 740
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 5 cut(s) 108, 305, 519, 876, 915
SatI GCNGC 1 cut(s) 660
Sau3AI GATC 7 cut(s) 214, 235, 316, 359, 676, 763, 931
SduI GDGCHC 1 cut(s) 91
SetI ASST 9 cut(s) 118, 388, 649, 664, 709, 772, 794, 894, 929
SfcI CTRYAG 1 cut(s) 539
SmiMI CAYNNNNRTG 1 cut(s) 384
Sse9I AATT 9 cut(s) 17, 65, 246, 263, 439, 466, 654, 759, 937
SspMI CTAG 6 cut(s) 12, 92, 417, 482, 642, 663
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 1 cut(s) 543
TaqI TCGA 4 cut(s) 327, 471, 513, 736
TasI AATT 9 cut(s) 17, 65, 246, 263, 439, 466, 654, 759, 937
TatI WGTACW 3 cut(s) 388, 580, 739
TfiI GAWTC 4 cut(s) 74, 121, 716, 728
Tru1I TTAA 5 cut(s) 108, 305, 519, 876, 915
Tru9I TTAA 5 cut(s) 108, 305, 519, 876, 915
TseI GCWGC 1 cut(s) 659
TspDTI ATGAA 5 cut(s) 258, 273, 297, 471, 745
XapI RAATTY 4 cut(s) 17, 246, 263, 466
XceI RCATGY 1 cut(s) 556
XmnI GAANNNNTTC 2 cut(s) 732, 857
XspI CTAG 6 cut(s) 12, 92, 417, 482, 642, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.