AT2G06500

Domain of unknown function (DUF4371)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000215
Physical Location & Seq
Reverse (-)
2580718 .. 2583223
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G06500.1

Sequence Viewer

Length: 1749 bp
ATGGATGTGATAAAAGAAAATTGCAAAAGAGACGAGAAGAGTTGGTACATGAAAAAACCTGAAAATCCTACAATTTCTGAAGTCATTAATTCTGATGGAAACAATAACCAACAAGAACGAGCTGATGAAGTGGATCCAGAGAATAAAGTGGACAATTTGGATGAAGTGGTTCAAGTGGATGAGAATGAATTTGAGAATAAACAACAAGAACAAGCTGAAGTTGTCTTTGAAAAGAAGAAAACAACTAGTGTGTACAATGATTGGAGAAATCTTTCGAAGCGACTCGAAGAACATGAAGGCAGCCATGACCACATTATTTGTATGACTCGTTGGACTGAGTTAGAGTCTAGACTACAGAACAAAACAACGATTGATAAGTATGTCCAACAAGAAATAAACAAAGAAAAGATTCATTGGAGGGAAGTACTAGTGAGGATCATTGCATTAGTGAAGACTCTCGCTAAAAATAACTTAGCATTTAGAGGAGAAAATAAAAAGATTGGTGAAGACAGAAATGGGAATTTTTTGAGTTTTATTGAGATGATTGCAGAGTTTGATGTAGTGATGAGAGAGCATATCAGAAAAATTGGTGCAGGTGAGATATATTCTCATTATCTAAGTCCCAAGATTCAAAATGAGTTGATAAGTATGCTGGCCCAAGAGATTAGACTTATGATCATGAAGACGATTCGTGCTTCAAAGTACTTCTCCATAATTCTTGATTGTACTCCAGATATTAGTCATAAAGAACAGATGACTATTCTCATTCGATGTGTGGATATTTCTTCAACACCAATTAAGGTTGAAGAATTCTTTTTGAAATTTTTGGAAGTCAATGATAAAACAGGTGAAGGGCTGTTCTCTACGATTCAAGAAGTACTAATTGATATGGAGTTAGAGATTGATGATGTGAGAGGACATGGGTGGGATATATTTAAAGAGATGGTAAAAGGTTTAACACTTAAATCCTTATCTCAAACTCGTTGGGAGAGTCATCTCGAAAGTGTCAAAGCAATACGGTTTCAGACTCCTGAAATCAGAGATGCTTTACTTTACTTGGCAGAAAAGACCGACGATCCAAAAACACGAAAGGCTATGGATATAGAAGCTGAATTTCCTGTGAAAAAGAAGAAGATCATTAGAAGAAAGAAGCATTTTGATCATGGGAATATGAAATTGTCAACAGAGGAGGATTTCAGAATTAATTACTTCCTTACACTCATAGATCAAGCTCTAATTTCTCTTGAGTCAAGGTTTGAGCAATTCCAAAGGTATGAACAAACTTTTGGATTTTTGTTTGATTTACAAAAATTGACATATGCAAATGATGAAAACTTGATGGCATCATGTGTGAATCTTGAATCATCCCTTAAGCATGGTGAGCATTCTGATATAGATGGGGCTGACTTGTTTATGGAACTAAAAGTTCTACGAGAAGTGCTACCAAATGAAGTTACGAAACCTATTAAAGTGTTGGATTTTTTGAAAAGAGTGGAGGGTTGTTATCCTAACACATGGATTTCGTTTCGGATATTATTGACTATTCTAGTGTCAGTTGCTTCAGCCGAAAGAAGTTTTTCTAAGCTTAAGTTGATCAAGAATTATTTGAGGTCCACCATGTCACAGGATAGGCTCAATGGGTTAGCCATATTATCAATTGAGAGAGCAATGCTTGAAAAGATTGATTATGCGACTGTGATGGATGACTTTGCAGGGAAAAATGCAAGCAGGATCATATTTACTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

582

Amino Acids

68.07

Weight (kDa)

5.67

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 90 - 315 1.5e-13 Domain of unknown function (DUF4371)
Dimer_Tnp_hAT PF05699 473 - 557 8e-19 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 584
Acc36I ACCTGC 1 cut(s) 584
AclWI GGATC 5 cut(s) 128, 141, 443, 1070, 1739
AcsI RAATTY 5 cut(s) 188, 520, 809, 821, 1112
AcuI CTGAAG 3 cut(s) 99, 237, 1545
AfaI GTAC 6 cut(s) 47, 254, 426, 704, 727, 879
AflII CTTAAG 2 cut(s) 1370, 1586
AhlI ACTAGT 2 cut(s) 245, 427
AjuI GAANNNNNNNTTGG 2 cut(s) 1269, 1301
AluBI AGCT 5 cut(s) 122, 215, 1109, 1232, 1585
AluI AGCT 5 cut(s) 122, 215, 1109, 1232, 1585
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 5 cut(s) 128, 141, 443, 1070, 1739
AoxI GGCC 1 cut(s) 654
ApeKI GCWGC 1 cut(s) 300
ApoI RAATTY 5 cut(s) 188, 520, 809, 821, 1112
AseI ATTAAT 2 cut(s) 87, 1203
Asp700I GAANNNNTTC 4 cut(s) 168, 271, 408, 1576
AspS9I GGNCC 2 cut(s) 655, 1611
AsuHPI GGTGA 4 cut(s) 515, 608, 860, 1391
AsuII TTCGAA 1 cut(s) 275
AvaII GGWCC 1 cut(s) 1611
BamHI GGATCC 1 cut(s) 133
BarI GAAGNNNNNNTAC 2 cut(s) 29, 61
BbsI GAAGAC 3 cut(s) 458, 513, 689
BbvI GCAGC 1 cut(s) 312
BccI CCATC 5 cut(s) 89, 937, 1333, 1391, 1693
BclI TGATCA 3 cut(s) 675, 1159, 1593
BcoDI GTCTC 1 cut(s) 24
BcuI ACTAGT 2 cut(s) 245, 427
BfaI CTAG 4 cut(s) 246, 348, 428, 1547
BfmI CTRYAG 1 cut(s) 353
BfrI CTTAAG 2 cut(s) 1370, 1586
BfuAI ACCTGC 1 cut(s) 584
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
BmcAI AGTACT 3 cut(s) 426, 704, 879
Bme18I GGWCC 1 cut(s) 1611
BmgT120I GGNCC 2 cut(s) 655, 1611
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 2 cut(s) 1033, 1352
BpiI GAAGAC 3 cut(s) 458, 513, 689
BpmI CTGGAG 1 cut(s) 714
Bpu14I TTCGAA 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 1265
Bse3DI GCAATG 2 cut(s) 438, 1674
BseGI GGATG 5 cut(s) 10, 166, 184, 1364, 1708
BseMI GCAATG 2 cut(s) 438, 1674
BseMII CTCAG 1 cut(s) 327
BseRI GAGGAG 2 cut(s) 498, 1202
BseXI GCAGC 1 cut(s) 312
BsgI GTGCAG 1 cut(s) 612
BshFI GGCC 1 cut(s) 656
BslFI GGGAC 1 cut(s) 606
BsmAI GTCTC 1 cut(s) 24
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 606
BsmI GAATGC 1 cut(s) 1384
BsnI GGCC 1 cut(s) 656
Bsp119I TTCGAA 1 cut(s) 275
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 9 cut(s) 133, 435, 675, 1075, 1134, 1159, 1225, 1593, 1731
BspANI GGCC 1 cut(s) 656
BspCNI CTCAG 1 cut(s) 328
BspHI TCATGA 1 cut(s) 678
BspLI GGNNCC 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 584
BspPI GGATC 5 cut(s) 128, 141, 443, 1070, 1739
BspT104I TTCGAA 1 cut(s) 275
BspTI CTTAAG 2 cut(s) 1370, 1586
BsrDI GCAATG 2 cut(s) 438, 1674
BsrGI TGTACA 1 cut(s) 252
BssMI GATC 9 cut(s) 133, 435, 675, 1075, 1134, 1159, 1225, 1593, 1731
Bst4CI ACNGT 2 cut(s) 1020, 1696
Bst6I CTCTTC 1 cut(s) 32
BstAFI CTTAAG 2 cut(s) 1370, 1586
BstAUI TGTACA 1 cut(s) 252
BstBI TTCGAA 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 654, 1726
BstDEI CTNAG 5 cut(s) 336, 472, 617, 1581, 1743
BstF5I GGATG 5 cut(s) 10, 166, 184, 1364, 1708
BstKTI GATC 9 cut(s) 136, 438, 678, 1078, 1137, 1162, 1228, 1596, 1734
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 9 cut(s) 133, 435, 675, 1075, 1134, 1159, 1225, 1593, 1731
BstMWI GCNNNNNNNGC 1 cut(s) 1381
BstSFI CTRYAG 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 312
BstV2I GAAGAC 3 cut(s) 458, 513, 689
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 1 cut(s) 656
BtsCI GGATG 5 cut(s) 10, 166, 184, 1364, 1708
BveI ACCTGC 1 cut(s) 584
Cac8I GCNNGC 2 cut(s) 654, 1726
CciI TCATGA 1 cut(s) 678
Cfr13I GGNCC 2 cut(s) 655, 1611
Csp6I GTAC 6 cut(s) 46, 253, 425, 703, 726, 878
CspCI CAANNNNNGTGG 2 cut(s) 299, 334
CviQI GTAC 6 cut(s) 46, 253, 425, 703, 726, 878
DdeI CTNAG 5 cut(s) 336, 472, 617, 1581, 1743
DpnI GATC 9 cut(s) 135, 437, 677, 1077, 1136, 1161, 1227, 1595, 1733
DpnII GATC 9 cut(s) 133, 435, 675, 1075, 1134, 1159, 1225, 1593, 1731
DraI TTTAAA 1 cut(s) 937
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 1611
Eco57I CTGAAG 3 cut(s) 99, 237, 1545
EcoRI GAATTC 1 cut(s) 809
Esp3I CGTCTC 1 cut(s) 24
FaqI GGGAC 1 cut(s) 606
FauNDI CATATG 1 cut(s) 1318
FbaI TGATCA 3 cut(s) 675, 1159, 1593
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 5 cut(s) 17, 173, 191, 1351, 1715
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 4 cut(s) 246, 348, 428, 1547
GluI GCNGC 1 cut(s) 301
GsuI CTGGAG 1 cut(s) 714
HaeIII GGCC 1 cut(s) 656
HincII GTYRAC 1 cut(s) 1182
HindII GTYRAC 1 cut(s) 1182
HindIII AAGCTT 1 cut(s) 1583
HphI GGTGA 4 cut(s) 515, 608, 860, 1391
Hpy166II GTNNAC 4 cut(s) 151, 253, 1182, 1614
Hpy188I TCNGA 8 cut(s) 79, 94, 581, 1026, 1040, 1199, 1390, 1530
Hpy8I GTNNAC 4 cut(s) 151, 253, 1182, 1614
Hpy99I CGWCG 1 cut(s) 1076
HpyAV CCTTC 2 cut(s) 290, 845
HpyCH4III ACNGT 2 cut(s) 1020, 1696
HpyCH4V TGCA 7 cut(s) 24, 443, 548, 593, 1322, 1712, 1724
HpyF10VI GCNNNNNNNGC 1 cut(s) 1381
HpyF3I CTNAG 5 cut(s) 336, 472, 617, 1581, 1743
Ksp22I TGATCA 3 cut(s) 675, 1159, 1593
Kzo9I GATC 9 cut(s) 133, 435, 675, 1075, 1134, 1159, 1225, 1593, 1731
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 2 cut(s) 1033, 1352
MaeI CTAG 4 cut(s) 246, 348, 428, 1547
MaeIII GTNAC 2 cut(s) 1453, 1620
MalI GATC 9 cut(s) 135, 437, 677, 1077, 1136, 1161, 1227, 1595, 1733
MboI GATC 9 cut(s) 133, 435, 675, 1075, 1134, 1159, 1225, 1593, 1731
MfeI CAATTG 1 cut(s) 1656
MflI RGATCY 1 cut(s) 133
MlyI GAGTC 7 cut(s) 276, 319, 353, 448, 1000, 1021, 1256
MmeI TCCRAC 3 cut(s) 311, 409, 1455
MnlI CCTC 8 cut(s) 411, 426, 476, 908, 1180, 1183, 1489, 1602
MroXI GAANNNNTTC 4 cut(s) 168, 271, 408, 1576
MseI TTAA 9 cut(s) 87, 798, 936, 956, 963, 1203, 1371, 1467, 1587
MspCI CTTAAG 2 cut(s) 1370, 1586
MunI CAATTG 1 cut(s) 1656
Mva1269I GAATGC 1 cut(s) 1384
MwoI GCNNNNNNNGC 1 cut(s) 1381
NdeI CATATG 1 cut(s) 1318
NdeII GATC 9 cut(s) 133, 435, 675, 1075, 1134, 1159, 1225, 1593, 1731
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 1620
NspV TTCGAA 1 cut(s) 275
PagI TCATGA 1 cut(s) 678
PaqCI CACCTGC 1 cut(s) 584
PctI GAATGC 1 cut(s) 1384
PdmI GAANNNNTTC 4 cut(s) 168, 271, 408, 1576
PfeI GAWTC 6 cut(s) 409, 628, 688, 868, 1354, 1361
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 7 cut(s) 276, 319, 352, 448, 999, 1021, 1255
PpsI GAGTC 7 cut(s) 276, 319, 352, 448, 999, 1021, 1255
PshBI ATTAAT 2 cut(s) 87, 1203
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 655, 1611
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 6 cut(s) 47, 254, 426, 704, 727, 879
RsaNI GTAC 6 cut(s) 46, 253, 425, 703, 726, 878
SaqAI TTAA 9 cut(s) 87, 798, 936, 956, 963, 1203, 1371, 1467, 1587
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 9 cut(s) 133, 435, 675, 1075, 1134, 1159, 1225, 1593, 1731
Sau96I GGNCC 2 cut(s) 655, 1611
ScaI AGTACT 3 cut(s) 426, 704, 879
SchI GAGTC 7 cut(s) 276, 319, 353, 448, 1000, 1021, 1256
SfaNI GCATC 2 cut(s) 1033, 1352
SfcI CTRYAG 1 cut(s) 353
SfuI TTCGAA 1 cut(s) 275
SinI GGWCC 1 cut(s) 1611
SmlI CTYRAG 3 cut(s) 1244, 1370, 1586
SmoI CTYRAG 3 cut(s) 1244, 1370, 1586
SpeI ACTAGT 2 cut(s) 245, 427
SspMI CTAG 4 cut(s) 246, 348, 428, 1547
TaaI ACNGT 2 cut(s) 1020, 1696
TaqI TCGA 4 cut(s) 275, 285, 769, 999
TaqII GACCGA 1 cut(s) 1085
TatI WGTACW 5 cut(s) 252, 424, 702, 725, 877
TfiI GAWTC 6 cut(s) 409, 628, 688, 868, 1354, 1361
Tru1I TTAA 9 cut(s) 87, 798, 936, 956, 963, 1203, 1371, 1467, 1587
Tru9I TTAA 9 cut(s) 87, 798, 936, 956, 963, 1203, 1371, 1467, 1587
TseFI GTSAC 1 cut(s) 1620
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 1620
Vha464I CTTAAG 2 cut(s) 1370, 1586
VpaK11BI GGWCC 1 cut(s) 1611
VspI ATTAAT 2 cut(s) 87, 1203
XapI RAATTY 5 cut(s) 188, 520, 809, 821, 1112
XbaI TCTAGA 1 cut(s) 347
XmnI GAANNNNTTC 4 cut(s) 168, 271, 408, 1576
XspI CTAG 4 cut(s) 246, 348, 428, 1547
ZrmI AGTACT 3 cut(s) 426, 704, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.