Rmu_sc0004443.1_g000001

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004443.1
OG0000215
Physical Location & Seq
Forward (+)
161 .. 3379
3219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004443.1_g000001.1.cds

Sequence Viewer

Length: 1200 bp
atgatagaactgctcgctgaatttgattctactatgcaagaacatgttcgacgtattaataaacatgagattcagtatcattatttgagtcacaaaattcagaatgaaatgattcaattgttggcaggtgaggtgaaaagctcaattattagtagaatcaaagaagccaaatatttttcagttatacttgactgtactccagatgcaagtaatgaggagcagatgtctcttgtattaagaagtgtcaatgtttcggctactccgattgtggttgaagaatattttctagaatttttgaaggtagctgacacatccggtcttggactgcttaatgaacttctaactgcattgaagactcttggacttgatgtcaatgatgtaagaggccagggcttctacaaagagatggtgcttaatgaacttctaactgcattgaagactcttggacttgatgtcaatgatgtaagaggccaggggtatgacaatggatccaacatgaaaggaaaaaacaaagctgagtctttctttggtgtaatacaacgaatatattccttgttttcagcttctacaaagagatggcaggtttttacagagcatgtgccgggtcttaccgttaagccattatcagacactcgttgggaaagtcgtgtggagagtgtcaaagcaataaggtatcaagctccagaaataagagaggctttgattcacttggtgaatggtaaagaagatgccaagacaaaacgtgttgctgagactttagcaacatataatcttcagaattttgaattcttgttgggtatgattatatggtatgaattgttacatgctgttaacaatgtcagcaaacttctgcaaactgaagatatgcatattgatactgccatcaaagaattggaacgtcttctttcctttcttcaaaagtttagagaaatcggatttgaggagtccttgattgaagctaaagagtttgcaagtgatatggggattgaaccagtattcatggaaaaacggacaattcacaaaaagagacaatttgatgaaagctctagcgaagcagtgacacaatcagctgcagaatcctttaaagtcaattattttctctacatagttgatcaagctatttcttcattcaaaaccagtatgttgtaccttgatatgtcagctttcattctggaaaatttcaacttcattgttgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

399

Amino Acids

45.66

Weight (kDa)

5.38

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 116
Acc36I ACCTGC 2 cut(s) 116, 571
AclWI GGATC 2 cut(s) 483, 496
AcsI RAATTY 6 cut(s) 20, 96, 290, 778, 785, 1177
AcuI CTGAAG 2 cut(s) 758, 879
AdeI CACNNNGTG 1 cut(s) 712
AfaI GTAC 2 cut(s) 196, 1148
AflIII ACRYGT 2 cut(s) 43, 742
AhdI GACNNNNNGTC 2 cut(s) 368, 452
AjnI CCWGG 2 cut(s) 387, 471
Alw26I GTCTC 3 cut(s) 231, 746, 1021
AlwI GGATC 2 cut(s) 483, 496
AoxI GGCC 2 cut(s) 385, 469
ApeKI GCWGC 1 cut(s) 1070
ApoI RAATTY 6 cut(s) 20, 96, 290, 778, 785, 1177
AseI ATTAAT 1 cut(s) 57
Asp700I GAANNNNTTC 5 cut(s) 45, 111, 282, 547, 900
AsuC2I CCSGG 1 cut(s) 603
AsuHPI GGTGA 3 cut(s) 140, 145, 724
BamHI GGATCC 1 cut(s) 488
BbsI GAAGAC 3 cut(s) 359, 443, 893
BbvI GCAGC 1 cut(s) 1057
BccI CCATC 3 cut(s) 400, 570, 890
BciT130I CCWGG 2 cut(s) 389, 473
BclI TGATCA 1 cut(s) 1111
BcnI CCSGG 1 cut(s) 603
BcoDI GTCTC 3 cut(s) 231, 746, 1021
BfaI CTAG 2 cut(s) 287, 1047
BfmI CTRYAG 1 cut(s) 1071
BfuAI ACCTGC 2 cut(s) 116, 571
BisI GCNGC 1 cut(s) 1071
BlsI GCNGC 1 cut(s) 1072
Bme1390I CCNGG 3 cut(s) 389, 473, 603
BmeRI GACNNNNNGTC 2 cut(s) 368, 452
BmiI GGNNCC 1 cut(s) 490
BmrFI CCNGG 3 cut(s) 389, 473, 603
BmsI GCATC 2 cut(s) 193, 718
BpiI GAAGAC 3 cut(s) 359, 443, 893
BpmI CTGGAG 2 cut(s) 183, 666
BpuMI CCSGG 1 cut(s) 603
BsaJI CCNNGG 2 cut(s) 388, 472
BsaWI WCCGGW 1 cut(s) 314
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bse1I ACTGG 2 cut(s) 992, 1137
BseBI CCWGG 2 cut(s) 389, 473
BseDI CCNNGG 2 cut(s) 388, 472
BseGI GGATG 1 cut(s) 311
BseMII CTCAG 2 cut(s) 507, 741
BseNI ACTGG 2 cut(s) 992, 1137
BseRI GAGGAG 2 cut(s) 230, 956
BseXI GCAGC 1 cut(s) 1057
BshFI GGCC 2 cut(s) 387, 471
BsiSI CCGG 2 cut(s) 315, 602
BsmAI GTCTC 3 cut(s) 231, 746, 1021
BsnI GGCC 2 cut(s) 387, 471
Bsp143I GATC 2 cut(s) 488, 1111
BspANI GGCC 2 cut(s) 387, 471
BspCNI CTCAG 2 cut(s) 508, 742
BspLI GGNNCC 1 cut(s) 490
BspMAI CTGCAG 1 cut(s) 1075
BspMI ACCTGC 2 cut(s) 116, 571
BspPI GGATC 2 cut(s) 483, 496
BsrI ACTGG 2 cut(s) 992, 1137
BssECI CCNNGG 2 cut(s) 388, 472
BssMI GATC 2 cut(s) 488, 1111
Bst2UI CCWGG 2 cut(s) 389, 473
Bst4CI ACNGT 2 cut(s) 194, 613
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 516, 750
BstF5I GGATG 1 cut(s) 311
BstKTI GATC 2 cut(s) 491, 1114
BstMAI GTCTC 3 cut(s) 231, 746, 1021
BstMBI GATC 2 cut(s) 488, 1111
BstNI CCWGG 2 cut(s) 389, 473
BstNSI RCATGY 3 cut(s) 47, 599, 827
BstSCI CCNGG 3 cut(s) 387, 471, 601
BstSFI CTRYAG 1 cut(s) 1071
BstV1I GCAGC 1 cut(s) 1057
BstV2I GAAGAC 3 cut(s) 359, 443, 893
BstX2I RGATCY 1 cut(s) 488
BstYI RGATCY 1 cut(s) 488
BsuRI GGCC 2 cut(s) 387, 471
BtsCI GGATG 1 cut(s) 311
BtsI GCAGTG 1 cut(s) 1062
BtsIMutI CAGTG 1 cut(s) 1062
BveI ACCTGC 2 cut(s) 116, 571
Cac8I GCNNGC 1 cut(s) 15
Csp6I GTAC 2 cut(s) 195, 1147
CviAII CATG 6 cut(s) 44, 65, 496, 596, 824, 1000
CviQI GTAC 2 cut(s) 195, 1147
DdeI CTNAG 2 cut(s) 516, 750
DpnI GATC 2 cut(s) 490, 1113
DpnII GATC 2 cut(s) 488, 1111
DraI TTTAAA 1 cut(s) 1084
DraIII CACNNNGTG 1 cut(s) 712
DriI GACNNNNNGTC 2 cut(s) 368, 452
Eam1105I GACNNNNNGTC 2 cut(s) 368, 452
Eco57I CTGAAG 2 cut(s) 758, 879
EcoRI GAATTC 1 cut(s) 785
EcoRII CCWGG 2 cut(s) 387, 471
EcoT22I ATGCAT 1 cut(s) 870
FaeI CATG 6 cut(s) 47, 68, 499, 599, 827, 1003
FalI AAGNNNNNCTT 2 cut(s) 682, 714
FatI CATG 6 cut(s) 43, 64, 495, 595, 823, 999
FbaI TGATCA 1 cut(s) 1111
Fnu4HI GCNGC 1 cut(s) 1071
FokI GGATG 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 1071
FspBI CTAG 2 cut(s) 287, 1047
GluI GCNGC 1 cut(s) 1071
GsuI CTGGAG 2 cut(s) 183, 666
HaeIII GGCC 2 cut(s) 387, 471
HapII CCGG 2 cut(s) 315, 602
Hin1II CATG 6 cut(s) 47, 68, 499, 599, 827, 1003
HincII GTYRAC 1 cut(s) 832
HindII GTYRAC 1 cut(s) 832
HpaI GTTAAC 1 cut(s) 832
HpaII CCGG 2 cut(s) 315, 602
HphI GGTGA 3 cut(s) 140, 145, 724
Hpy166II GTNNAC 1 cut(s) 832
Hpy188I TCNGA 5 cut(s) 102, 264, 628, 777, 935
Hpy188III TCNNGA 4 cut(s) 200, 287, 683, 1172
Hpy8I GTNNAC 1 cut(s) 832
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 2 cut(s) 194, 613
HpyCH4IV ACGT 3 cut(s) 52, 742, 898
HpyCH4V TGCA 9 cut(s) 37, 206, 347, 431, 853, 868, 971, 1073, 1196
HpyF3I CTNAG 2 cut(s) 516, 750
HpySE526I ACGT 3 cut(s) 52, 742, 898
Hsp92II CATG 6 cut(s) 47, 68, 499, 599, 827, 1003
Ksp22I TGATCA 1 cut(s) 1111
KspAI GTTAAC 1 cut(s) 832
Kzo9I GATC 2 cut(s) 488, 1111
LmnI GCTCC 2 cut(s) 217, 685
Lsp1109I GCAGC 1 cut(s) 1057
LweI GCATC 2 cut(s) 193, 718
MaeI CTAG 2 cut(s) 287, 1047
MaeII ACGT 3 cut(s) 52, 742, 898
MaeIII GTNAC 3 cut(s) 89, 819, 1057
MalI GATC 2 cut(s) 490, 1113
MboI GATC 2 cut(s) 488, 1111
MboII GAAGA 9 cut(s) 287, 364, 448, 737, 764, 872, 893, 905, 1116
MfeI CAATTG 1 cut(s) 116
MflI RGATCY 1 cut(s) 488
MlyI GAGTC 5 cut(s) 97, 349, 433, 527, 953
MmeI TCCRAC 1 cut(s) 516
MnlI CCTC 6 cut(s) 124, 208, 377, 461, 688, 934
Mph1103I ATGCAT 1 cut(s) 870
MroXI GAANNNNTTC 5 cut(s) 45, 111, 282, 547, 900
MseI TTAA 7 cut(s) 57, 236, 330, 414, 615, 831, 1083
MspA1I CMGCKG 1 cut(s) 1070
MspI CCGG 2 cut(s) 315, 602
MspR9I CCNGG 3 cut(s) 389, 473, 603
MunI CAATTG 1 cut(s) 116
MvaI CCWGG 2 cut(s) 389, 473
NciI CCSGG 1 cut(s) 603
NdeII GATC 2 cut(s) 488, 1111
NlaIII CATG 6 cut(s) 47, 68, 499, 599, 827, 1003
NlaIV GGNNCC 1 cut(s) 490
NmuCI GTSAC 2 cut(s) 89, 1057
NsiI ATGCAT 1 cut(s) 870
NspI RCATGY 3 cut(s) 47, 599, 827
PaqCI CACCTGC 1 cut(s) 116
PciI ACATGT 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PdmI GAANNNNTTC 5 cut(s) 45, 111, 282, 547, 900
PfeI GAWTC 6 cut(s) 26, 70, 112, 156, 703, 1076
PkrI GCNGC 1 cut(s) 1072
PleI GAGTC 5 cut(s) 96, 349, 433, 526, 952
PpsI GAGTC 5 cut(s) 96, 349, 433, 526, 952
PscI ACATGT 1 cut(s) 43
PshBI ATTAAT 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 387, 471
PspGI CCWGG 2 cut(s) 387, 471
PspN4I GGNNCC 1 cut(s) 490
PstI CTGCAG 1 cut(s) 1075
PsuI RGATCY 1 cut(s) 488
PvuII CAGCTG 1 cut(s) 1070
RsaI GTAC 2 cut(s) 196, 1148
RsaNI GTAC 2 cut(s) 195, 1147
SaqAI TTAA 7 cut(s) 57, 236, 330, 414, 615, 831, 1083
SatI GCNGC 1 cut(s) 1071
Sau3AI GATC 2 cut(s) 488, 1111
SchI GAGTC 5 cut(s) 97, 349, 433, 527, 953
ScrFI CCNGG 3 cut(s) 389, 473, 603
SfaNI GCATC 2 cut(s) 193, 718
SfcI CTRYAG 1 cut(s) 1071
SspI AATATT 2 cut(s) 173, 281
SspMI CTAG 2 cut(s) 287, 1047
StyD4I CCNGG 3 cut(s) 387, 471, 601
TaaI ACNGT 2 cut(s) 194, 613
TaiI ACGT 3 cut(s) 55, 745, 901
TaqI TCGA 1 cut(s) 49
TatI WGTACW 1 cut(s) 194
TfiI GAWTC 6 cut(s) 26, 70, 112, 156, 703, 1076
Tru1I TTAA 7 cut(s) 57, 236, 330, 414, 615, 831, 1083
Tru9I TTAA 7 cut(s) 57, 236, 330, 414, 615, 831, 1083
TscAI CASTG 1 cut(s) 1062
TseFI GTSAC 2 cut(s) 89, 1057
TseI GCWGC 1 cut(s) 1070
Tsp45I GTSAC 2 cut(s) 89, 1057
TspGWI ACGGA 1 cut(s) 1024
TspRI CASTG 1 cut(s) 1062
VspI ATTAAT 1 cut(s) 57
XapI RAATTY 6 cut(s) 20, 96, 290, 778, 785, 1177
XbaI TCTAGA 1 cut(s) 286
XceI RCATGY 3 cut(s) 47, 599, 827
XcmI CCANNNNNNNNNTGG 1 cut(s) 889
XmnI GAANNNNTTC 5 cut(s) 45, 111, 282, 547, 900
XspI CTAG 2 cut(s) 287, 1047
Zsp2I ATGCAT 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.