Rw2G034990

Domain of unknown function (DUF4371)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000215
Physical Location & Seq
Reverse (-)
57637350 .. 57638820
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G034990.1

Sequence Viewer

Length: 1314 bp
ATGCCTCCTAAAAGAAAATGTTTATCTGGACATGCAAAACGCTTAAAGAAGAAAAAAGATGCAGAGTTGGTTAATTCTTTAAGGGGAAGTCTTGATAGGTTCATTAGTAGAGAATCAGAAGGTTTGGGTGGGCATTTGGTTAATGAAGTGGCAGAAGAGCACACTGATAGGGAAGATAATGTGGAAAGGGAAGATAATGTGGAAGAGCACACTGATGGCAATGTAGTTGTCGATAATTTGGGTCATGATGAAAATGAGAATGGTACAGGACATAATGATAATGTGAATGATGCTCCTGTGAATATTTTTGACCCAAGAAATTGGGATAGTTTGGATAAAAAGTTGATAGATTTGTTGGTAGAAAAGGGTCCTCATAAAGATCTTTCAATAGAAAATGGTCCTCCAGACAAGTTCAATAGACGTTTCAGTTCAAAATTCTACACTCGGTTTTTAAGAAATGGAGAGAAATATGATAGAGAGTGGCTAGTGTACTCAAAGGAACTTGATAAGGTTTTTTGTTTTTGTTGCAAGTTGTTTAAGAGGGGGCCAATGCGAGGTCAGTTACCGAATGATGGGTACAATGATTGGGTTCATCTTAGTAAAAGACTTAAAGAGCATGAAATGAGCACTGATCATCTCATTAATGCAAATACTTGGACTGATTTGCGTCTTAGATTGCAGAAGCATGAAACAATTGATAAAGCTTTTCAAGACCAGATTAGGAAAGAGAAAGAACACTGGAGGAATGTGCTTAAAAGAATAATTGCAATTGTCAAATTTCTTGCTAAAAATAACTTAGCTTTCCGTGGAACTAATGAGAGGCTTTATGAACCTAATAATGGACACTTCTTAGGCCTAGTTGAAATGGTGGCAGAATGTGAAGAAGTGATGGAGGAGCATTGTAGACGCATAAATAGTTTTGAAATTCATCATCACTATCTTGGTCATAACATTCAGAATGAGTTGCTGCATATGATAGCTATTGAAATCAAAGCTGAAATCATAAAAAAAATTAAAGATGCTGAATATTTCTCGGTTATTCTTGATTGCACACCAGATATTAGTCACCAAGAGCAGATGTCATTGATAATTAGATGTGTAAATGTTTCAAAGAGTCCAATACAAATTGAAGAGTTCTTTTTGGAGTTTTTAAATGTACATGACACTTCTGGTCAGGGGCTATTTGAAGAGTTGCAGGCTGTGGTACAATCATTGGATCTTGATATTAACAATGTGAGGGGACAAGGATACGACAACGGGTCAAACATGAAAGGCAAACACCAAGGGGTTCTACAAAGCGATGGCAGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

437

Amino Acids

50.81

Weight (kDa)

6.01

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 224 - 429 8e-21 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 904
AclWI GGATC 1 cut(s) 1224
AcsI RAATTY 3 cut(s) 434, 776, 924
AfaI GTAC 5 cut(s) 265, 491, 578, 1158, 1206
AfiI CCNNNNNNNGG 3 cut(s) 554, 572, 839
AhdI GACNNNNNGTC 1 cut(s) 1258
AluBI AGCT 4 cut(s) 704, 800, 980, 995
AluI AGCT 4 cut(s) 704, 800, 980, 995
Alw21I GWGCWC 3 cut(s) 162, 210, 629
AlwI GGATC 1 cut(s) 1224
AoxI GGCC 2 cut(s) 545, 853
ApeKI GCWGC 1 cut(s) 967
ApoI RAATTY 3 cut(s) 434, 776, 924
AseI ATTAAT 1 cut(s) 642
AspS9I GGNCC 3 cut(s) 368, 398, 545
AsuHPI GGTGA 1 cut(s) 1058
AvaII GGWCC 2 cut(s) 368, 398
Bbv12I GWGCWC 3 cut(s) 162, 210, 629
BbvI GCAGC 1 cut(s) 954
BccI CCATC 4 cut(s) 209, 566, 883, 1295
BciVI GTATCC 1 cut(s) 1241
BclI TGATCA 1 cut(s) 631
BfaI CTAG 2 cut(s) 485, 857
BfuI GTATCC 1 cut(s) 1241
BglII AGATCT 1 cut(s) 379
BisI GCNGC 1 cut(s) 968
BlsI GCNGC 1 cut(s) 969
Bme18I GGWCC 2 cut(s) 368, 398
BmeRI GACNNNNNGTC 1 cut(s) 1258
BmgT120I GGNCC 3 cut(s) 368, 398, 545
BmiI GGNNCC 2 cut(s) 369, 546
BmsI GCATC 3 cut(s) 49, 280, 1009
BpmI CTGGAG 2 cut(s) 387, 760
BsaJI CCNNGG 2 cut(s) 805, 1282
Bsc4I CCNNNNNNNGG 3 cut(s) 554, 572, 839
Bse1I ACTGG 1 cut(s) 743
Bse3DI GCAATG 1 cut(s) 226
BseDI CCNNGG 2 cut(s) 805, 1282
BseLI CCNNNNNNNGG 3 cut(s) 554, 572, 839
BseMI GCAATG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 743
BseRI GAGGAG 1 cut(s) 908
BseXI GCAGC 1 cut(s) 954
BshFI GGCC 2 cut(s) 547, 855
BsiHKAI GWGCWC 3 cut(s) 162, 210, 629
BslFI GGGAC 1 cut(s) 1254
BslI CCNNNNNNNGG 3 cut(s) 554, 572, 839
BsmFI GGGAC 1 cut(s) 1254
BsnI GGCC 2 cut(s) 547, 855
Bsp1286I GDGCHC 3 cut(s) 162, 210, 629
Bsp1407I TGTACA 1 cut(s) 1156
Bsp143I GATC 3 cut(s) 379, 631, 1216
BspANI GGCC 2 cut(s) 547, 855
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 2 cut(s) 369, 546
BspPI GGATC 1 cut(s) 1224
BspQI GCTCTTC 2 cut(s) 150, 198
BsrDI GCAATG 1 cut(s) 226
BsrGI TGTACA 1 cut(s) 1156
BsrI ACTGG 1 cut(s) 743
BssECI CCNNGG 2 cut(s) 805, 1282
BssMI GATC 3 cut(s) 379, 631, 1216
BssT1I CCWWGG 1 cut(s) 1282
Bst6I CTCTTC 4 cut(s) 150, 198, 1125, 1182
BstAUI TGTACA 1 cut(s) 1156
BstC8I GCNNGC 1 cut(s) 1197
BstDEI CTNAG 4 cut(s) 596, 671, 796, 850
BstDSI CCRYGG 1 cut(s) 805
BstKTI GATC 3 cut(s) 382, 634, 1219
BstMBI GATC 3 cut(s) 379, 631, 1216
BstNSI RCATGY 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 954
BstX2I RGATCY 2 cut(s) 379, 1216
BstXI CCANNNNNNTGG 1 cut(s) 321
BstYI RGATCY 2 cut(s) 379, 1216
BsuI GTATCC 1 cut(s) 1241
BsuRI GGCC 2 cut(s) 547, 855
BtgI CCRYGG 1 cut(s) 805
BtsIMutI CAGTG 4 cut(s) 162, 210, 627, 736
Cac8I GCNNGC 1 cut(s) 1197
CciI TCATGA 1 cut(s) 244
Cfr13I GGNCC 3 cut(s) 368, 398, 545
CseI GACGC 2 cut(s) 656, 915
Csp6I GTAC 5 cut(s) 264, 490, 577, 1157, 1205
CviAII CATG 6 cut(s) 32, 245, 617, 686, 1160, 1267
CviQI GTAC 5 cut(s) 264, 490, 577, 1157, 1205
DdeI CTNAG 4 cut(s) 596, 671, 796, 850
DpnI GATC 3 cut(s) 381, 633, 1218
DpnII GATC 3 cut(s) 379, 631, 1216
DraI TTTAAA 1 cut(s) 1152
DriI GACNNNNNGTC 1 cut(s) 1258
Eam1104I CTCTTC 4 cut(s) 150, 198, 1125, 1182
Eam1105I GACNNNNNGTC 1 cut(s) 1258
EarI CTCTTC 4 cut(s) 150, 198, 1125, 1182
Eco130I CCWWGG 1 cut(s) 1282
Eco147I AGGCCT 1 cut(s) 855
Eco47I GGWCC 2 cut(s) 368, 398
EcoO109I RGGNCCY 1 cut(s) 368
EcoT14I CCWWGG 1 cut(s) 1282
ErhI CCWWGG 1 cut(s) 1282
FaeI CATG 6 cut(s) 35, 248, 620, 689, 1163, 1270
FaqI GGGAC 1 cut(s) 1254
FatI CATG 6 cut(s) 31, 244, 616, 685, 1159, 1266
FauNDI CATATG 1 cut(s) 972
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 1 cut(s) 904
Fnu4HI GCNGC 1 cut(s) 968
Fsp4HI GCNGC 1 cut(s) 968
FspBI CTAG 2 cut(s) 485, 857
GluI GCNGC 1 cut(s) 968
GsuI CTGGAG 2 cut(s) 387, 760
HaeIII GGCC 2 cut(s) 547, 855
HgaI GACGC 2 cut(s) 656, 915
Hin1II CATG 6 cut(s) 35, 248, 620, 689, 1163, 1270
HindIII AAGCTT 1 cut(s) 702
HinfI GANTC 2 cut(s) 113, 1114
HphI GGTGA 1 cut(s) 1058
Hpy166II GTNNAC 2 cut(s) 490, 905
Hpy188I TCNGA 2 cut(s) 118, 957
Hpy188III TCNNGA 7 cut(s) 27, 92, 245, 404, 710, 1043, 1220
Hpy8I GTNNAC 2 cut(s) 490, 905
HpyAV CCTTC 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 9 cut(s) 35, 62, 528, 647, 679, 767, 970, 1050, 1195
HpyF3I CTNAG 4 cut(s) 596, 671, 796, 850
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 6 cut(s) 35, 248, 620, 689, 1163, 1270
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 3 cut(s) 379, 631, 1216
LguI GCTCTTC 2 cut(s) 150, 198
LmnI GCTCC 2 cut(s) 298, 895
Lsp1109I GCAGC 1 cut(s) 954
LweI GCATC 3 cut(s) 49, 280, 1009
MaeI CTAG 2 cut(s) 485, 857
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 2 cut(s) 561, 1064
MalI GATC 3 cut(s) 381, 633, 1218
MboI GATC 3 cut(s) 379, 631, 1216
MboII GAAGA 8 cut(s) 61, 167, 185, 203, 215, 893, 1142, 1199
MfeI CAATTG 2 cut(s) 693, 768
MflI RGATCY 2 cut(s) 379, 1216
MhlI GDGCHC 3 cut(s) 162, 210, 629
MlyI GAGTC 1 cut(s) 1123
MnlI CCTC 9 cut(s) 15, 381, 411, 534, 548, 735, 813, 886, 1230
MslI CAYNNNNRTG 1 cut(s) 213
MunI CAATTG 2 cut(s) 693, 768
NdeI CATATG 1 cut(s) 972
NdeII GATC 3 cut(s) 379, 631, 1216
NlaIII CATG 6 cut(s) 35, 248, 620, 689, 1163, 1270
NlaIV GGNNCC 2 cut(s) 369, 546
NmuCI GTSAC 1 cut(s) 1064
NspI RCATGY 1 cut(s) 35
PagI TCATGA 1 cut(s) 244
PceI AGGCCT 1 cut(s) 855
PciSI GCTCTTC 2 cut(s) 150, 198
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 969
PleI GAGTC 1 cut(s) 1122
PpsI GAGTC 1 cut(s) 1122
PpuMI RGGWCCY 1 cut(s) 368
PshBI ATTAAT 1 cut(s) 642
Psp5II RGGWCCY 1 cut(s) 368
PspN4I GGNNCC 2 cut(s) 369, 546
PspPI GGNCC 3 cut(s) 368, 398, 545
PspPPI RGGWCCY 1 cut(s) 368
PsuI RGATCY 2 cut(s) 379, 1216
RsaI GTAC 5 cut(s) 265, 491, 578, 1158, 1206
RsaNI GTAC 5 cut(s) 264, 490, 577, 1157, 1205
RseI CAYNNNNRTG 1 cut(s) 213
SapI GCTCTTC 2 cut(s) 150, 198
SatI GCNGC 1 cut(s) 968
Sau3AI GATC 3 cut(s) 379, 631, 1216
Sau96I GGNCC 3 cut(s) 368, 398, 545
SchI GAGTC 1 cut(s) 1123
SduI GDGCHC 3 cut(s) 162, 210, 629
SfaNI GCATC 3 cut(s) 49, 280, 1009
SinI GGWCC 2 cut(s) 368, 398
SmiMI CAYNNNNRTG 1 cut(s) 213
SseBI AGGCCT 1 cut(s) 855
SspI AATATT 2 cut(s) 304, 1028
SspMI CTAG 2 cut(s) 485, 857
StuI AGGCCT 1 cut(s) 855
StyI CCWWGG 1 cut(s) 1282
TaiI ACGT 1 cut(s) 424
TaqI TCGA 1 cut(s) 231
TatI WGTACW 2 cut(s) 489, 1156
TfiI GAWTC 1 cut(s) 113
TscAI CASTG 4 cut(s) 169, 217, 634, 743
TseFI GTSAC 1 cut(s) 1064
TseI GCWGC 1 cut(s) 967
Tsp45I GTSAC 1 cut(s) 1064
TspDTI ATGAA 9 cut(s) 91, 159, 264, 581, 633, 702, 843, 917, 1283
TspGWI ACGGA 1 cut(s) 794
TspRI CASTG 4 cut(s) 169, 217, 634, 743
VpaK11BI GGWCC 2 cut(s) 368, 398
VspI ATTAAT 1 cut(s) 642
XapI RAATTY 3 cut(s) 434, 776, 924
XceI RCATGY 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 904
XspI CTAG 2 cut(s) 485, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.