Rmu_sc0011630.1_g000006

Domain of unknown function (DUF4371)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011630.1
OG0000215
Physical Location & Seq
Reverse (-)
18760 .. 21593
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011630.1_g000006.1.cds

Sequence Viewer

Length: 798 bp
atgcagtcgaccttgatcgggcttgaagtttcaggtgacgtcactacccagaaccatcttgacattccacttcatggggaagccgtctgggatgccttcggtctccatcaggcaagattcgcaccatcatcagtgcttgatcattgcagaaacatcaacgtccgcacttgtacgacagtgtggacgtccagggcctgctctcaagttaatgaagtggcagaagagcacactgatagggaagataatgtggaagagcacactgatggcaatgtagttgtcggtaatttgggtcatgatgaaaatgagaagggttctacaaagcgatggcagattttgaaagacaacctaaaaggattcactctcaaatcattatccactacgcattgggagagtcctattgaaagtgttaagcctctacgattcaacgccgttgaaataagagaagcattacttcaattggcagaaattgacaaggatcccaaaattaaaagtggtgcaaagtcgatagcaactaatgatttgggagactttgagtttttgctaagcatggtgatttggtatgagatgttgttttcttttaatagggttagcaaagtgctgcagtctaatgatatgcaaattagtgttgctatagctgaagtaaaaggtctaattgcttggcttgataagtttagagaaactggcttcacagatgcaatgattactgctaaagaaattgctgctgcattagatgttgatcctatttttctggaaaagcgtccaattcaaataacaagatttttttatgaaagcagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

265

Amino Acids

29.85

Weight (kDa)

5.07

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 42, 188
AccB7I CCANNNNNTGG 1 cut(s) 74
AccI GTMKAC 1 cut(s) 8
AciI CCGC 1 cut(s) 163
AclWI GGATC 3 cut(s) 470, 483, 731
AcuI CTGAAG 1 cut(s) 657
AcyI GRCGYC 2 cut(s) 39, 185
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 2 cut(s) 18, 74
AgsI TTSAA 7 cut(s) 26, 337, 401, 424, 434, 455, 767
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 1 cut(s) 635
AluI AGCT 1 cut(s) 635
Alw21I GWGCWC 2 cut(s) 228, 258
Alw26I GTCTC 2 cut(s) 107, 519
AlwI GGATC 3 cut(s) 470, 483, 731
AlwNI CAGNNNCTG 1 cut(s) 195
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 3 cut(s) 598, 719, 722
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 47, 562
BamHI GGATCC 1 cut(s) 475
Bbv12I GWGCWC 2 cut(s) 228, 258
BbvI GCAGC 3 cut(s) 585, 706, 709
BccI CCATC 5 cut(s) 63, 114, 133, 257, 318
BceAI ACGGC 2 cut(s) 68, 413
BciT130I CCWGG 1 cut(s) 190
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 107, 519
BfmI CTRYAG 2 cut(s) 599, 630
BisI GCNGC 3 cut(s) 599, 720, 723
BlpI GCTNAGC 1 cut(s) 542
BlsI GCNGC 3 cut(s) 600, 721, 724
Bme1390I CCNGG 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 2 cut(s) 82, 682
Bpu1102I GCTNAGC 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 735
BsaHI GRCGYC 2 cut(s) 39, 185
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 74
Bse1I ACTGG 1 cut(s) 685
Bse3DI GCAATG 3 cut(s) 142, 274, 702
Bse8I GATNNNNATC 1 cut(s) 735
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 97
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 2 cut(s) 18, 74
BseMI GCAATG 3 cut(s) 142, 274, 702
BseNI ACTGG 1 cut(s) 685
BseXI GCAGC 3 cut(s) 585, 706, 709
BshFI GGCC 1 cut(s) 194
BsiHKAI GWGCWC 2 cut(s) 228, 258
BslI CCNNNNNNNGG 2 cut(s) 18, 74
BsmAI GTCTC 2 cut(s) 107, 519
BsnI GGCC 1 cut(s) 194
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 228, 258
Bsp143I GATC 4 cut(s) 15, 139, 475, 736
Bsp1720I GCTNAGC 1 cut(s) 542
BspACI CCGC 1 cut(s) 163
BspANI GGCC 1 cut(s) 194
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 477
BspMAI CTGCAG 1 cut(s) 603
BspPI GGATC 3 cut(s) 470, 483, 731
BspQI GCTCTTC 2 cut(s) 216, 246
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 3 cut(s) 142, 274, 702
BsrI ACTGG 1 cut(s) 685
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 4 cut(s) 15, 139, 475, 736
BssNI GRCGYC 2 cut(s) 39, 185
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 2 cut(s) 216, 246
BstACI GRCGYC 2 cut(s) 39, 185
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 542
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 4 cut(s) 18, 142, 478, 739
BstMAI GTCTC 2 cut(s) 107, 519
BstMBI GATC 4 cut(s) 15, 139, 475, 736
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
BstSFI CTRYAG 2 cut(s) 599, 630
BstV1I GCAGC 3 cut(s) 585, 706, 709
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BsuRI GGCC 1 cut(s) 194
BtgZI GCGATG 1 cut(s) 337
BtsCI GGATG 1 cut(s) 97
BtsIMutI CAGTG 4 cut(s) 138, 183, 228, 258
Cac8I GCNNGC 1 cut(s) 196
CaiI CAGNNNCTG 1 cut(s) 195
CciI TCATGA 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 192
CseI GACGC 1 cut(s) 746
Csp6I GTAC 1 cut(s) 171
CviAII CATG 3 cut(s) 74, 293, 547
CviJI RGCY 7 cut(s) 22, 83, 194, 412, 635, 661, 684
CviKI_1 RGCY 7 cut(s) 22, 83, 194, 412, 635, 661, 684
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 1 cut(s) 542
DpnI GATC 4 cut(s) 17, 141, 477, 738
DpnII GATC 4 cut(s) 15, 139, 475, 736
Eam1104I CTCTTC 2 cut(s) 216, 246
EarI CTCTTC 2 cut(s) 216, 246
Eco31I GGTCTC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 657
EcoO109I RGGNCCY 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 188
FaeI CATG 3 cut(s) 77, 296, 550
FaiI YATR 7 cut(s) 75, 294, 548, 561, 614, 632, 786
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FatI CATG 3 cut(s) 73, 292, 546
FbaI TGATCA 1 cut(s) 139
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 3 cut(s) 599, 720, 723
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 3 cut(s) 599, 720, 723
GluI GCNGC 3 cut(s) 599, 720, 723
HaeIII GGCC 1 cut(s) 194
HgaI GACGC 1 cut(s) 746
Hin1I GRCGYC 2 cut(s) 39, 185
Hin1II CATG 3 cut(s) 77, 296, 550
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 4 cut(s) 117, 354, 391, 420
HphI GGTGA 2 cut(s) 47, 562
Hpy166II GTNNAC 2 cut(s) 9, 183
Hpy188III TCNNGA 3 cut(s) 59, 293, 749
Hpy8I GTNNAC 2 cut(s) 9, 183
HpyAV CCTTC 2 cut(s) 106, 301
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 3 cut(s) 39, 159, 185
HpyCH4V TGCA 7 cut(s) 4, 147, 497, 601, 616, 695, 725
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 542
HpySE526I ACGT 3 cut(s) 39, 159, 185
Hsp92I GRCGYC 2 cut(s) 39, 185
Hsp92II CATG 3 cut(s) 77, 296, 550
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 4 cut(s) 15, 139, 475, 736
LguI GCTCTTC 2 cut(s) 216, 246
LpnPI CCDG 9 cut(s) 18, 62, 73, 95, 175, 202, 208, 666, 734
Lsp1109I GCAGC 3 cut(s) 585, 706, 709
LweI GCATC 2 cut(s) 82, 682
MaeII ACGT 3 cut(s) 39, 159, 185
MaeIII GTNAC 2 cut(s) 35, 40
MalI GATC 4 cut(s) 17, 141, 477, 738
MboI GATC 4 cut(s) 15, 139, 475, 736
MboII GAAGA 3 cut(s) 233, 251, 263
MfeI CAATTG 1 cut(s) 455
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 2 cut(s) 228, 258
MluCI AATT 8 cut(s) 283, 455, 465, 483, 618, 651, 714, 762
MlyI GAGTC 1 cut(s) 400
MnlI CCTC 1 cut(s) 423
MseI TTAA 4 cut(s) 207, 408, 486, 579
MslI CAYNNNNRTG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 190
MunI CAATTG 1 cut(s) 455
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 4 cut(s) 15, 139, 475, 736
NlaIII CATG 3 cut(s) 77, 296, 550
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 2 cut(s) 35, 40
PagI TCATGA 1 cut(s) 292
PciSI GCTCTTC 2 cut(s) 216, 246
PfeI GAWTC 3 cut(s) 117, 354, 420
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 3 cut(s) 600, 721, 724
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 192
PstI CTGCAG 1 cut(s) 603
PstNI CAGNNNCTG 1 cut(s) 195
PsuI RGATCY 1 cut(s) 475
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
RseI CAYNNNNRTG 1 cut(s) 261
SalI GTCGAC 1 cut(s) 7
SapI GCTCTTC 2 cut(s) 216, 246
SaqAI TTAA 4 cut(s) 207, 408, 486, 579
SatI GCNGC 3 cut(s) 599, 720, 723
Sau3AI GATC 4 cut(s) 15, 139, 475, 736
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 2 cut(s) 228, 258
SetI ASST 8 cut(s) 14, 37, 42, 162, 188, 348, 637, 649
SfaNI GCATC 2 cut(s) 82, 682
SfcI CTRYAG 2 cut(s) 599, 630
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 8 cut(s) 283, 455, 465, 483, 618, 651, 714, 762
SsiI CCGC 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 3 cut(s) 42, 162, 188
TaqI TCGA 2 cut(s) 8, 503
TaqII GACCGA 1 cut(s) 89
TasI AATT 8 cut(s) 283, 455, 465, 483, 618, 651, 714, 762
TfiI GAWTC 3 cut(s) 117, 354, 420
Tru1I TTAA 4 cut(s) 207, 408, 486, 579
Tru9I TTAA 4 cut(s) 207, 408, 486, 579
TscAI CASTG 4 cut(s) 138, 183, 235, 265
TseFI GTSAC 2 cut(s) 35, 40
TseI GCWGC 3 cut(s) 598, 719, 722
Tsp45I GTSAC 2 cut(s) 35, 40
TspDTI ATGAA 3 cut(s) 62, 225, 312
TspRI CASTG 4 cut(s) 138, 183, 235, 265
Van91I CCANNNNNTGG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 8
ZraI GACGTC 2 cut(s) 40, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.