FvH4_6g47641

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000215
Physical Location & Seq
Reverse (-)
36040138 .. 36041832
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47641.t1

Sequence Viewer

Length: 1695 bp
ATGGCTTTAGTTGAAATGGTTGCTGAATGGGACTCGACCTTGAAGGAGCATATACGAAGAAAACAAAATCATGAAATTCAGTTTCATTATCTCAGTCACAAGATTCAAAATGAGTTGATACTCTTGATAGCTGCTGAAATCAAAGGTGCAGTCCTAAAGAAAATAAAAGAAGCCAAGTATTTTTCAGTAATACTCGATTGTACTCCTGATATCAGCAAGGAAGAACAAATGACATTGATAATAAGGTGTGTTGATGTCTCCACAGTTCCAATACAGGTACAAGAATATTTTCTGCAGTTTTTGGTTGTGAATGATACAACAGGTCAAGGGTTGTTTGAAGAATTGAAGAATGTGCTACACCATCTTGATCTTGATATTAATGATGTCAGAGGGCAGGGCTACGATAATGGATCAAACATGAAGGGTAAACACAAAGGTGTACAAAAAAAACTTCTAGACATTAATCCTAGAGCATTTTATACACCTTGTGGTTCACATTCTCTCAATTTGACATTGTCTGATGTTGCAAACTCTTGTGAAAAAGCAGAAGAGTTTTTTGGAGTTGTGCAACGTATCTACACCTTGTTTGCAGACTCTACAAAAAGGTGGGATATTTTGAAAGACAATATATCAGAAAAAGGTTACACTTTGAAATCATTATCGACAACACGGTGGGAAAGCAGAATAGATAGTGTGAAGGCAATAGTTACTCAAGCTCCTGAAATAAGAGAAGCTCTAAATCAGCTTGCCGAGAGAGCAACAGAGTCTGGTATTAAAAGTGAAGCCAAGTGTTTAGCAGAGTATGAACTTGGAAAATTTGAGTTTATTGTAGGGATGGTTATCTGGTATCATATCTTGGCTAAAGTGAATATTGTCAGTAAAGAATTACAATCTGAAAATATGTGGATTGATGTGGCAATGGGTAGTGTGAAGGCACTTATTGCTTTCTTTAAAGAGTACAGAGAAGAAGGATTTAAGAAGGCTCTGAATTGTGCCAAAGAGATTGCTGCTGAATTAGATATTGATCCAGTGTTTCCTGAGAAGAAAAAGAAAAGAAAAGTTCACAAGAAGAGACATTTTGATGAGATTGACACTGAAACTCAGCCATCTGAACAATTCATTGAAGAATCAAGTCAAGAATCTTTCAGAGTTCATTACTTTGTATACATAATTGATCAAGCAATCGGTTCATTGGAAAGAAGGTTTGAGCAATATGAGCAATATGAAGAGACATTTGGGTTCTTATTCACAGCAAAGAAGTTGAAGTCCTTGGATGCTGATGAACTGAAAAGAAGTTGCAACAATCTTGAAAAGAAGCTGGAGAATGGCTACACTTCAGACATTGATGGTGAAGATTTATTTAATGAATTAGAACTATTACAGAAAAATTTACCAAATGAGCATGATACAGCTAGTGCAATACTAAATTTCTTGAAAAGAGCTAATTGTTATCCTACTAGTTGTCTTGCATACAGAATTTTGTTAACAATTCCAGTGACAGTAGCATCAGCCGAAAGAAGCTTTTCAAAGCTAAAAATATTGAAATCTTATTTGCGTTCAGCCATGTCGCAAGAAAGACTAAATGCTTTGGCTTTGATTTCCATTGAACATGAGTTCTTGGAAAAGCTTGACTATGAGAGATTGATTGATGATTTTGCATCTAAGAGTGCTAGAAGATCAGTATTCAGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

565

Amino Acids

65.06

Weight (kDa)

6.05

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 30 - 146 1.5e-11 Domain of unknown function (DUF4371)
Dimer_Tnp_hAT PF05699 458 - 538 2.9e-15 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1164
AclWI GGATC 2 cut(s) 418, 1019
AcsI RAATTY 5 cut(s) 75, 815, 1387, 1426, 1476
AcuI CTGAAG 1 cut(s) 1320
AdeI CACNNNGTG 1 cut(s) 488
AfaI GTAC 4 cut(s) 202, 279, 441, 959
AhlI ACTAGT 1 cut(s) 1457
AjuI GAANNNNNNNTTGG 4 cut(s) 540, 572, 1218, 1250
AleI CACNNNNGTG 1 cut(s) 435
Alw26I GTCTC 3 cut(s) 262, 1066, 1223
AlwI GGATC 2 cut(s) 418, 1019
AlwNI CAGNNNCTG 1 cut(s) 767
ApeKI GCWGC 2 cut(s) 131, 1007
ApoI RAATTY 5 cut(s) 75, 815, 1387, 1426, 1476
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AseI ATTAAT 2 cut(s) 378, 462
Asp700I GAANNNNTTC 2 cut(s) 288, 1522
AsuHPI GGTGA 1 cut(s) 1361
BbvI GCAGC 2 cut(s) 118, 994
BccI CCATC 4 cut(s) 369, 829, 1114, 1340
BclI TGATCA 1 cut(s) 1174
BcoDI GTCTC 3 cut(s) 262, 1066, 1223
BcuI ACTAGT 1 cut(s) 1457
BfaI CTAG 5 cut(s) 455, 468, 1413, 1458, 1671
BfmI CTRYAG 1 cut(s) 293
BisI GCNGC 2 cut(s) 132, 1008
BlsI GCNGC 2 cut(s) 133, 1009
BmsI GCATC 3 cut(s) 1264, 1514, 1667
BpmI CTGGAG 1 cut(s) 1340
BpuEI CTTGAG 1 cut(s) 696
BsaBI GATNNNNATC 2 cut(s) 839, 1023
BsaJI CCNNGG 1 cut(s) 1269
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bse1I ACTGG 2 cut(s) 1028, 1493
Bse3DI GCAATG 1 cut(s) 924
Bse8I GATNNNNATC 2 cut(s) 839, 1023
BseDI CCNNGG 1 cut(s) 1269
BseGI GGATG 2 cut(s) 840, 1279
BseJI GATNNNNATC 2 cut(s) 839, 1023
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 3 cut(s) 106, 1029, 1115
BseNI ACTGG 2 cut(s) 1028, 1493
BseXI GCAGC 2 cut(s) 118, 994
BsgI GTGCAG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 44
BsmAI GTCTC 3 cut(s) 262, 1066, 1223
BsmFI GGGAC 1 cut(s) 44
Bsp1407I TGTACA 1 cut(s) 439
Bsp143I GATC 5 cut(s) 367, 410, 1024, 1174, 1676
BspCNI CTCAG 3 cut(s) 105, 1030, 1114
BspHI TCATGA 1 cut(s) 70
BspMAI CTGCAG 1 cut(s) 297
BspPI GGATC 2 cut(s) 418, 1019
BsrDI GCAATG 1 cut(s) 924
BsrGI TGTACA 1 cut(s) 439
BsrI ACTGG 2 cut(s) 1028, 1493
BssECI CCNNGG 1 cut(s) 1269
BssMI GATC 5 cut(s) 367, 410, 1024, 1174, 1676
BssNAI GTATAC 1 cut(s) 1165
BssT1I CCWWGG 1 cut(s) 1269
Bst1107I GTATAC 1 cut(s) 1165
Bst4CI ACNGT 3 cut(s) 265, 672, 1501
Bst6I CTCTTC 3 cut(s) 543, 1064, 1221
BstAPI GCANNNNNTGC 1 cut(s) 941
BstAUI TGTACA 1 cut(s) 439
BstC8I GCNNGC 1 cut(s) 747
BstDEI CTNAG 4 cut(s) 92, 1038, 1101, 1662
BstF5I GGATG 2 cut(s) 840, 1279
BstKTI GATC 5 cut(s) 370, 413, 1027, 1177, 1679
BstMAI GTCTC 3 cut(s) 262, 1066, 1223
BstMBI GATC 5 cut(s) 367, 410, 1024, 1174, 1676
BstMWI GCNNNNNNNGC 3 cut(s) 755, 941, 1216
BstSFI CTRYAG 1 cut(s) 293
BstV1I GCAGC 2 cut(s) 118, 994
BstZ17I GTATAC 1 cut(s) 1165
BtsCI GGATG 2 cut(s) 840, 1279
BtsIMutI CAGTG 3 cut(s) 1035, 1092, 1500
Cac8I GCNNGC 1 cut(s) 747
CaiI CAGNNNCTG 1 cut(s) 767
CciI TCATGA 1 cut(s) 70
Csp6I GTAC 4 cut(s) 201, 278, 440, 958
CviAII CATG 5 cut(s) 71, 418, 1403, 1564, 1610
CviQI GTAC 4 cut(s) 201, 278, 440, 958
DdeI CTNAG 4 cut(s) 92, 1038, 1101, 1662
DpnI GATC 5 cut(s) 369, 412, 1026, 1176, 1678
DpnII GATC 5 cut(s) 367, 410, 1024, 1174, 1676
DraI TTTAAA 1 cut(s) 952
DraIII CACNNNGTG 1 cut(s) 488
Eam1104I CTCTTC 3 cut(s) 543, 1064, 1221
EarI CTCTTC 3 cut(s) 543, 1064, 1221
Eco130I CCWWGG 1 cut(s) 1269
Eco32I GATATC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 1320
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 1269
ErhI CCWWGG 1 cut(s) 1269
FaeI CATG 5 cut(s) 74, 421, 1406, 1567, 1613
FaqI GGGAC 1 cut(s) 44
FatI CATG 5 cut(s) 70, 417, 1402, 1563, 1609
FbaI TGATCA 1 cut(s) 1174
FblI GTMKAC 1 cut(s) 1164
Fnu4HI GCNGC 2 cut(s) 132, 1008
FokI GGATG 2 cut(s) 847, 1286
Fsp4HI GCNGC 2 cut(s) 132, 1008
FspBI CTAG 5 cut(s) 455, 468, 1413, 1458, 1671
GluI GCNGC 2 cut(s) 132, 1008
GsuI CTGGAG 1 cut(s) 1340
Hin1II CATG 5 cut(s) 74, 421, 1406, 1567, 1613
HincII GTYRAC 1 cut(s) 1485
HindII GTYRAC 1 cut(s) 1485
HindIII AAGCTT 2 cut(s) 1519, 1625
HinfI GANTC 6 cut(s) 32, 103, 593, 764, 1127, 1139
HpaI GTTAAC 1 cut(s) 1485
HphI GGTGA 1 cut(s) 1361
Hpy166II GTNNAC 6 cut(s) 428, 440, 494, 1063, 1165, 1485
Hpy188I TCNGA 9 cut(s) 389, 520, 634, 895, 987, 1111, 1148, 1339, 1688
Hpy8I GTNNAC 6 cut(s) 428, 440, 494, 1063, 1165, 1485
HpyAV CCTTC 7 cut(s) 37, 415, 691, 925, 962, 973, 1194
HpyCH4III ACNGT 3 cut(s) 265, 672, 1501
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 9 cut(s) 149, 295, 527, 568, 590, 1299, 1418, 1469, 1658
HpyF10VI GCNNNNNNNGC 3 cut(s) 755, 941, 1216
HpyF3I CTNAG 4 cut(s) 92, 1038, 1101, 1662
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 5 cut(s) 74, 421, 1406, 1567, 1613
Ksp22I TGATCA 1 cut(s) 1174
KspAI GTTAAC 1 cut(s) 1485
Kzo9I GATC 5 cut(s) 367, 410, 1024, 1174, 1676
LmnI GCTCC 2 cut(s) 46, 721
Lsp1109I GCAGC 2 cut(s) 118, 994
LweI GCATC 3 cut(s) 1264, 1514, 1667
MaeI CTAG 5 cut(s) 455, 468, 1413, 1458, 1671
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 4 cut(s) 95, 641, 706, 1495
MalI GATC 5 cut(s) 369, 412, 1026, 1176, 1678
MboI GATC 5 cut(s) 367, 410, 1024, 1174, 1676
MlyI GAGTC 3 cut(s) 26, 587, 773
MnlI CCTC 1 cut(s) 383
MroXI GAANNNNTTC 2 cut(s) 288, 1522
MseI TTAA 7 cut(s) 378, 462, 774, 951, 975, 1362, 1484
MslI CAYNNNNRTG 2 cut(s) 435, 1080
MwoI GCNNNNNNNGC 3 cut(s) 755, 941, 1216
NdeII GATC 5 cut(s) 367, 410, 1024, 1174, 1676
NlaIII CATG 5 cut(s) 74, 421, 1406, 1567, 1613
NmeAIII GCCGAG 1 cut(s) 775
NmuCI GTSAC 2 cut(s) 95, 1495
OliI CACNNNNGTG 1 cut(s) 435
PagI TCATGA 1 cut(s) 70
PdmI GAANNNNTTC 2 cut(s) 288, 1522
PfeI GAWTC 3 cut(s) 103, 1127, 1139
PflFI GACNNNGTC 1 cut(s) 514
PkrI GCNGC 2 cut(s) 133, 1009
PleI GAGTC 3 cut(s) 26, 587, 772
PpsI GAGTC 3 cut(s) 26, 587, 772
PshBI ATTAAT 2 cut(s) 378, 462
PstI CTGCAG 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 767
PsyI GACNNNGTC 1 cut(s) 514
RsaI GTAC 4 cut(s) 202, 279, 441, 959
RsaNI GTAC 4 cut(s) 201, 278, 440, 958
RseI CAYNNNNRTG 2 cut(s) 435, 1080
SaqAI TTAA 7 cut(s) 378, 462, 774, 951, 975, 1362, 1484
SatI GCNGC 2 cut(s) 132, 1008
Sau3AI GATC 5 cut(s) 367, 410, 1024, 1174, 1676
SchI GAGTC 3 cut(s) 26, 587, 773
SfaNI GCATC 3 cut(s) 1264, 1514, 1667
SfcI CTRYAG 1 cut(s) 293
SmiMI CAYNNNNRTG 2 cut(s) 435, 1080
SmlI CTYRAG 1 cut(s) 711
SmoI CTYRAG 1 cut(s) 711
SpeI ACTAGT 1 cut(s) 1457
SspI AATATT 3 cut(s) 287, 871, 1539
SspMI CTAG 5 cut(s) 455, 468, 1413, 1458, 1671
StyI CCWWGG 1 cut(s) 1269
TaaI ACNGT 3 cut(s) 265, 672, 1501
TaiI ACGT 1 cut(s) 574
TaqI TCGA 3 cut(s) 35, 195, 662
TatI WGTACW 3 cut(s) 200, 439, 957
TfiI GAWTC 3 cut(s) 103, 1127, 1139
Tru1I TTAA 7 cut(s) 378, 462, 774, 951, 975, 1362, 1484
Tru9I TTAA 7 cut(s) 378, 462, 774, 951, 975, 1362, 1484
TscAI CASTG 3 cut(s) 1035, 1099, 1500
TseFI GTSAC 2 cut(s) 95, 1495
TseI GCWGC 2 cut(s) 131, 1007
Tsp45I GTSAC 2 cut(s) 95, 1495
TspRI CASTG 3 cut(s) 1035, 1099, 1500
Tth111I GACNNNGTC 1 cut(s) 514
VspI ATTAAT 2 cut(s) 378, 462
XapI RAATTY 5 cut(s) 75, 815, 1387, 1426, 1476
XbaI TCTAGA 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 1164
XmnI GAANNNNTTC 2 cut(s) 288, 1522
XspI CTAG 5 cut(s) 455, 468, 1413, 1458, 1671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.