FvH4_2g15031

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000215
Physical Location & Seq
Forward (+)
13194931 .. 13198600
3670 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15031.t1

Sequence Viewer

Length: 759 bp
ATGAATGGACAGACGGTGGCAGATTGGGTAAAAGTTCTGCTTGGACGACTGGTGGAGGTCATAGGTGTGAGAACAGTGAGAGCTTTTCGAACGCGTAGTCGTGGTGTGGCTGATATTCCTGGCAATGGAATTACAGCGCTTATGAGTTCTGTGTCGACAAAGTCAAAGTTAGGACTGGGCCTCGCTCAGTATAGTGCTCTTTTTAGGCTAGATGAACTTGGTTGTGCTCCTAGTGTGTCAAACATCAATACATACCTGCTTACTGCACCACCACTCTCTCAAAGCTTGGTGGCCGGCAGTGCCGGCCCATGGGCTGTGCCAAGTGTGCAGTTGCATAGGGCCTCCAATTTTGGAGGAGATTGTCAGATTGTTGCTGACTTAGATATTGATCCAGTGTTTCCTGAGAAGAAAAAGAAAAGAAAAGTTCACAAGAAGAGACATTTTGATGAGATTGACACTGAAACTCAGCCATCTGAACAACTCATTGAAGAATCAAGTCAAGAATCTTTCAGAGTTCATTACTTTGTATACATAATTGATCAAGCAATCGGTTCATTGGAAAGAAGGTTTGAGCAATATGAAGAGACATTTGGGTTCTTATTCACAGCAAAGGAGTTGAAGTCCTTGGATGCTGATGAATTGAAAAGAAGTTGCAACAATCTTGAAAAGAAGCTCGAGAATGGCCACACTTCCGACATTGATGGTGAGGATTTATTTAATGAATTGGAACTATTACAGATACAGCTAGTGCAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

253

Amino Acids

28.16

Weight (kDa)

5.48

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 264
AccI GTMKAC 2 cut(s) 155, 528
AccII CGCG 1 cut(s) 94
AclWI GGATC 1 cut(s) 383
AcoI YGGCCR 2 cut(s) 291, 682
AfeI AGCGCT 1 cut(s) 138
AfiI CCNNNNNNNGG 2 cut(s) 125, 309
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 4 cut(s) 488, 619, 643, 665
AjnI CCWGG 1 cut(s) 118
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
AluBI AGCT 4 cut(s) 83, 285, 673, 745
AluI AGCT 4 cut(s) 83, 285, 673, 745
Alw21I GWGCWC 2 cut(s) 199, 229
Alw26I GTCTC 2 cut(s) 430, 578
AlwI GGATC 1 cut(s) 383
Ama87I CYCGRG 1 cut(s) 674
Aor51HI AGCGCT 1 cut(s) 138
AoxI GGCC 5 cut(s) 178, 291, 304, 339, 682
ArsI GACNNNNNNTTYG 2 cut(s) 82, 114
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 3 cut(s) 178, 305, 339
AsuHPI GGTGA 1 cut(s) 716
AsuII TTCGAA 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 674
BalI TGGCCA 1 cut(s) 684
Bbv12I GWGCWC 2 cut(s) 199, 229
BccI CCATC 2 cut(s) 478, 695
BciT130I CCWGG 1 cut(s) 120
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 2 cut(s) 430, 578
BfaI CTAG 3 cut(s) 209, 231, 746
BfoI RGCGCY 1 cut(s) 140
BfuAI ACCTGC 1 cut(s) 264
Bme1390I CCNGG 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 674
BmgT120I GGNCC 3 cut(s) 178, 305, 339
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 619
BmuI ACTGGG 1 cut(s) 185
Bpu14I TTCGAA 1 cut(s) 88
BsaBI GATNNNNATC 1 cut(s) 387
BsaJI CCNNGG 2 cut(s) 308, 624
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 309
Bse118I RCCGGY 2 cut(s) 293, 302
Bse1I ACTGG 3 cut(s) 54, 180, 392
Bse3DI GCAATG 1 cut(s) 130
Bse8I GATNNNNATC 1 cut(s) 387
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 308, 624
BseGI GGATG 1 cut(s) 634
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 2 cut(s) 125, 309
BseMI GCAATG 1 cut(s) 130
BseMII CTCAG 3 cut(s) 200, 393, 479
BseNI ACTGG 3 cut(s) 54, 180, 392
BseRI GAGGAG 1 cut(s) 369
BsgI GTGCAG 2 cut(s) 249, 347
Bsh1236I CGCG 1 cut(s) 94
BshFI GGCC 5 cut(s) 180, 293, 306, 341, 684
BsiHKAI GWGCWC 2 cut(s) 199, 229
BsiHKCI CYCGRG 1 cut(s) 674
BsiSI CCGG 2 cut(s) 294, 303
BslI CCNNNNNNNGG 2 cut(s) 125, 309
BsmAI GTCTC 2 cut(s) 430, 578
BsnI GGCC 5 cut(s) 180, 293, 306, 341, 684
BsoBI CYCGRG 1 cut(s) 674
Bsp119I TTCGAA 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 199, 229
Bsp143I GATC 2 cut(s) 388, 538
Bsp19I CCATGG 1 cut(s) 308
BspANI GGCC 5 cut(s) 180, 293, 306, 341, 684
BspCNI CTCAG 3 cut(s) 199, 394, 478
BspFNI CGCG 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 264
BspPI GGATC 1 cut(s) 383
BspT104I TTCGAA 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 130
BsrFI RCCGGY 2 cut(s) 293, 302
BsrI ACTGG 3 cut(s) 54, 180, 392
BssAI RCCGGY 2 cut(s) 293, 302
BssECI CCNNGG 2 cut(s) 308, 624
BssMI GATC 2 cut(s) 388, 538
BssNAI GTATAC 1 cut(s) 529
BssT1I CCWWGG 2 cut(s) 308, 624
Bst1107I GTATAC 1 cut(s) 529
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 16, 76
Bst6I CTCTTC 2 cut(s) 428, 576
BstBI TTCGAA 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 295, 304
BstDEI CTNAG 4 cut(s) 186, 379, 402, 465
BstDSI CCRYGG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 634
BstFNI CGCG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 2 cut(s) 391, 541
BstMAI GTCTC 2 cut(s) 430, 578
BstMBI GATC 2 cut(s) 388, 538
BstMWI GCNNNNNNNGC 3 cut(s) 299, 303, 325
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstUI CGCG 1 cut(s) 94
BstZ17I GTATAC 1 cut(s) 529
BsuRI GGCC 5 cut(s) 180, 293, 306, 341, 684
BtgI CCRYGG 1 cut(s) 308
BtsCI GGATG 1 cut(s) 634
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 4 cut(s) 81, 304, 399, 456
BveI ACCTGC 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 295, 304
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 2 cut(s) 293, 302
Cfr13I GGNCC 3 cut(s) 178, 305, 339
CviAII CATG 1 cut(s) 309
DdeI CTNAG 4 cut(s) 186, 379, 402, 465
DpnI GATC 2 cut(s) 390, 540
DpnII GATC 2 cut(s) 388, 538
EaeI YGGCCR 2 cut(s) 291, 682
Eam1104I CTCTTC 2 cut(s) 428, 576
EarI CTCTTC 2 cut(s) 428, 576
Eco130I CCWWGG 2 cut(s) 308, 624
Eco47III AGCGCT 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 674
EcoO109I RGGNCCY 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 2 cut(s) 308, 624
ErhI CCWWGG 2 cut(s) 308, 624
FaeI CATG 1 cut(s) 312
FaiI YATR 9 cut(s) 62, 143, 192, 253, 310, 336, 529, 533, 579
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FatI CATG 1 cut(s) 308
FbaI TGATCA 1 cut(s) 538
FblI GTMKAC 2 cut(s) 155, 528
FokI GGATG 1 cut(s) 641
FspBI CTAG 3 cut(s) 209, 231, 746
GlaI GCGC 1 cut(s) 138
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 5 cut(s) 180, 293, 306, 341, 684
HapII CCGG 2 cut(s) 294, 303
HhaI GCGC 1 cut(s) 139
Hin1II CATG 1 cut(s) 312
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 2 cut(s) 491, 503
HpaII CCGG 2 cut(s) 294, 303
HphI GGTGA 1 cut(s) 716
Hpy166II GTNNAC 3 cut(s) 156, 427, 529
Hpy188I TCNGA 4 cut(s) 366, 475, 512, 694
Hpy188III TCNNGA 4 cut(s) 401, 500, 662, 676
Hpy8I GTNNAC 3 cut(s) 156, 427, 529
HpyAV CCTTC 1 cut(s) 558
HpyCH4III ACNGT 2 cut(s) 16, 76
HpyCH4V TGCA 5 cut(s) 266, 328, 334, 654, 751
HpyF10VI GCNNNNNNNGC 3 cut(s) 299, 303, 325
HpyF3I CTNAG 4 cut(s) 186, 379, 402, 465
Hsp92II CATG 1 cut(s) 312
HspAI GCGC 1 cut(s) 137
KroI GCCGGC 2 cut(s) 293, 302
KroNI GCCGGC 2 cut(s) 295, 304
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 2 cut(s) 388, 538
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 9 cut(s) 35, 105, 132, 161, 269, 307, 316, 405, 414
LweI GCATC 1 cut(s) 619
MaeI CTAG 3 cut(s) 209, 231, 746
MalI GATC 2 cut(s) 390, 540
MboI GATC 2 cut(s) 388, 538
MboII GAAGA 4 cut(s) 418, 445, 500, 593
MhlI GDGCHC 2 cut(s) 199, 229
MlsI TGGCCA 1 cut(s) 684
MluCI AATT 5 cut(s) 129, 346, 534, 638, 722
MluI ACGCGT 1 cut(s) 92
MluNI TGGCCA 1 cut(s) 684
MmeI TCCRAC 1 cut(s) 717
MnlI CCTC 5 cut(s) 49, 191, 347, 352, 700
Mox20I TGGCCA 1 cut(s) 684
MroNI GCCGGC 2 cut(s) 293, 302
MscI TGGCCA 1 cut(s) 684
MseI TTAA 1 cut(s) 717
MslI CAYNNNNRTG 2 cut(s) 65, 444
Msp20I TGGCCA 1 cut(s) 684
MspI CCGG 2 cut(s) 294, 303
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 3 cut(s) 299, 303, 325
NaeI GCCGGC 2 cut(s) 295, 304
NcoI CCATGG 1 cut(s) 308
NdeII GATC 2 cut(s) 388, 538
NgoMIV GCCGGC 2 cut(s) 293, 302
NlaIII CATG 1 cut(s) 312
NspV TTCGAA 1 cut(s) 88
PaeR7I CTCGAG 1 cut(s) 674
PdiI GCCGGC 2 cut(s) 295, 304
PfeI GAWTC 2 cut(s) 491, 503
PflFI GACNNNGTC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspPI GGNCC 3 cut(s) 178, 305, 339
PsyI GACNNNGTC 1 cut(s) 160
RseI CAYNNNNRTG 2 cut(s) 65, 444
SalI GTCGAC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 717
Sau3AI GATC 2 cut(s) 388, 538
Sau96I GGNCC 3 cut(s) 178, 305, 339
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 2 cut(s) 199, 229
SetI ASST 8 cut(s) 60, 67, 85, 258, 287, 569, 675, 747
SfaNI GCATC 1 cut(s) 619
Sfr274I CTCGAG 1 cut(s) 674
SfuI TTCGAA 1 cut(s) 88
SlaI CTCGAG 1 cut(s) 674
SmiMI CAYNNNNRTG 2 cut(s) 65, 444
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 5 cut(s) 129, 346, 534, 638, 722
SspMI CTAG 3 cut(s) 209, 231, 746
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 2 cut(s) 308, 624
TaaI ACNGT 2 cut(s) 16, 76
TaqI TCGA 3 cut(s) 88, 155, 675
TasI AATT 5 cut(s) 129, 346, 534, 638, 722
TfiI GAWTC 2 cut(s) 491, 503
Tru1I TTAA 1 cut(s) 717
Tru9I TTAA 1 cut(s) 717
TscAI CASTG 4 cut(s) 81, 304, 399, 463
TspDTI ATGAA 7 cut(s) 17, 228, 506, 543, 594, 651, 735
TspRI CASTG 4 cut(s) 81, 304, 399, 463
Tth111I GACNNNGTC 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 674
XmiI GTMKAC 2 cut(s) 155, 528
XspI CTAG 3 cut(s) 209, 231, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.