RchiOBHm_Chr5g0031951

Domain of unknown function (DUF4371)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000215
Physical Location & Seq
Reverse (-)
25686890 .. 25688020
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31116

Sequence Viewer

Length: 672 bp
ATGAATGGGTTTATTCTAAAAGGGGTGTGTGAATTTGGGTGTAGAATCAAATTCCCTCAAAGAAAAAGATTTTTTGATGAAAGCGGCAGTGAGCCATCTCCATCATCTTCAGGTCAAGAATCTTTTAGAGTGCATTATTTCTTATATATTGTAGATCAAGCTAAGGGATCATTAAATAGAAGGTTTGAACAATATCAACATTATGATGATATCTTTGGATTTTTATTCACTTTAGAAACTTTGAATTCCTTGAATGATAATGATATGAAAACTGCTTGTATTCATCTTGAGACTGTTTTGAGACATGGAGAGAGTTCAGATGTTGATGGGGAATACCTGTTTAGAGAGCTAAAACTCTTAAGGGAAATATTACCCAAACAGAGGATGACTACTATTGATATATTGAATTTCTTACAGGAAAGGAACACTTGCCCGGTTGTTAGACTTGTATATCGAATATTGTTAACTGTGCCTGTTACTGTTGCTTCAGCTGAGAGGAGTTTTTCCAAGTTAAAGTTGTTGAAATCTTATTTGCGATCAACTATGTCACAAGAAAGGTTAAATGAACTTGCTTTGATTTCAATTGAGAACGAATATCTTGGAAAAATCAATTGTGATAAGCTAATTGATCAGTTTGCAGGTAAGAAGGCAAGGAGATGGATTTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

223

Amino Acids

26.07

Weight (kDa)

8.91

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 125 - 198 3.7e-16 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 629
AciI CCGC 1 cut(s) 84
AclWI GGATC 1 cut(s) 175
AcsI RAATTY 4 cut(s) 32, 50, 244, 406
AcuI CTGAAG 2 cut(s) 93, 471
AfiI CCNNNNNNNGG 1 cut(s) 381
AflII CTTAAG 1 cut(s) 358
AgsI TTSAA 7 cut(s) 188, 244, 253, 406, 523, 582, 667
AluBI AGCT 4 cut(s) 161, 349, 491, 622
AluI AGCT 4 cut(s) 161, 349, 491, 622
Alw26I GTCTC 2 cut(s) 284, 295
AlwI GGATC 1 cut(s) 175
ApoI RAATTY 4 cut(s) 32, 50, 244, 406
AsuC2I CCSGG 1 cut(s) 434
BccI CCATC 4 cut(s) 103, 109, 320, 651
BclI TGATCA 1 cut(s) 628
BcnI CCSGG 1 cut(s) 434
BcoDI GTCTC 2 cut(s) 284, 295
BfrI CTTAAG 1 cut(s) 358
BfuAI ACCTGC 1 cut(s) 629
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 434
BmrFI CCNGG 1 cut(s) 434
Bpu10I CCTNAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 434
Bsc4I CCNNNNNNNGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 390
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 483
BseRI GAGGAG 1 cut(s) 511
BsiSI CCGG 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 2 cut(s) 284, 295
Bsp143I GATC 4 cut(s) 154, 167, 536, 628
BspACI CCGC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 484
BspMI ACCTGC 1 cut(s) 629
BspPI GGATC 1 cut(s) 175
BspTI CTTAAG 1 cut(s) 358
BssMI GATC 4 cut(s) 154, 167, 536, 628
Bst4CI ACNGT 3 cut(s) 295, 469, 481
BstAFI CTTAAG 1 cut(s) 358
BstDEI CTNAG 2 cut(s) 162, 492
BstF5I GGATG 1 cut(s) 390
BstKTI GATC 4 cut(s) 157, 170, 539, 631
BstMAI GTCTC 2 cut(s) 284, 295
BstMBI GATC 4 cut(s) 154, 167, 536, 628
BstSCI CCNGG 1 cut(s) 432
BtsCI GGATG 1 cut(s) 390
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 94
BveI ACCTGC 1 cut(s) 629
CviAII CATG 1 cut(s) 305
CviJI RGCY 5 cut(s) 94, 161, 349, 491, 622
CviKI_1 RGCY 5 cut(s) 94, 161, 349, 491, 622
DdeI CTNAG 2 cut(s) 162, 492
DpnI GATC 4 cut(s) 156, 169, 538, 630
DpnII GATC 4 cut(s) 154, 167, 536, 628
Eco32I GATATC 1 cut(s) 211
Eco57I CTGAAG 2 cut(s) 93, 471
EcoRI GAATTC 1 cut(s) 244
EcoRV GATATC 1 cut(s) 211
FaeI CATG 1 cut(s) 308
FaiI YATR 8 cut(s) 145, 147, 204, 266, 306, 401, 451, 545
FalI AAGNNNNNCTT 2 cut(s) 412, 444
FatI CATG 1 cut(s) 304
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 1 cut(s) 397
Fsp4HI GCNGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 85
HapII CCGG 1 cut(s) 434
Hin1II CATG 1 cut(s) 308
HincII GTYRAC 1 cut(s) 465
HindII GTYRAC 1 cut(s) 465
HinfI GANTC 2 cut(s) 45, 119
HpaI GTTAAC 1 cut(s) 465
HpaII CCGG 1 cut(s) 434
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 2 cut(s) 116, 287
Hpy8I GTNNAC 1 cut(s) 465
HpyAV CCTTC 2 cut(s) 174, 640
HpyCH4III ACNGT 3 cut(s) 295, 469, 481
HpyCH4V TGCA 2 cut(s) 133, 638
HpyF3I CTNAG 2 cut(s) 162, 492
Hsp92II CATG 1 cut(s) 308
Ksp22I TGATCA 1 cut(s) 628
KspAI GTTAAC 1 cut(s) 465
Kzo9I GATC 4 cut(s) 154, 167, 536, 628
LpnPI CCDG 6 cut(s) 96, 350, 401, 447, 486, 624
MaeIII GTNAC 2 cut(s) 475, 546
MalI GATC 4 cut(s) 156, 169, 538, 630
MboI GATC 4 cut(s) 154, 167, 536, 628
MboII GAAGA 1 cut(s) 99
MfeI CAATTG 2 cut(s) 582, 610
MluCI AATT 7 cut(s) 32, 50, 244, 406, 582, 610, 624
MnlI CCTC 3 cut(s) 66, 375, 489
MseI TTAA 5 cut(s) 173, 359, 464, 512, 560
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 491
MspCI CTTAAG 1 cut(s) 358
MspI CCGG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 434
MunI CAATTG 2 cut(s) 582, 610
NciI CCSGG 1 cut(s) 434
NdeII GATC 4 cut(s) 154, 167, 536, 628
NlaIII CATG 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 546
PfeI GAWTC 2 cut(s) 45, 119
PkrI GCNGC 1 cut(s) 86
PvuII CAGCTG 1 cut(s) 491
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 5 cut(s) 173, 359, 464, 512, 560
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 4 cut(s) 154, 167, 536, 628
ScrFI CCNGG 1 cut(s) 434
SetI ASST 9 cut(s) 115, 163, 185, 339, 351, 493, 560, 624, 643
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 2 cut(s) 287, 358
SmoI CTYRAG 2 cut(s) 287, 358
Sse9I AATT 7 cut(s) 32, 50, 244, 406, 582, 610, 624
SsiI CCGC 1 cut(s) 84
SspI AATATT 2 cut(s) 369, 459
StyD4I CCNGG 1 cut(s) 432
TaaI ACNGT 3 cut(s) 295, 469, 481
TaqI TCGA 1 cut(s) 454
TasI AATT 7 cut(s) 32, 50, 244, 406, 582, 610, 624
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 2 cut(s) 45, 119
Tru1I TTAA 5 cut(s) 173, 359, 464, 512, 560
Tru9I TTAA 5 cut(s) 173, 359, 464, 512, 560
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 1 cut(s) 546
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 5 cut(s) 17, 93, 272, 281, 579
TspRI CASTG 1 cut(s) 94
Vha464I CTTAAG 1 cut(s) 358
XapI RAATTY 4 cut(s) 32, 50, 244, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.