Rw2G034650

Zinc finger MYM-type protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
56984635 .. 56985424
790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G034650.1

Sequence Viewer

Length: 759 bp
ATGATTCTTGATGTTGCTAATAAAAGTTTAAAAGGGTTGATTTCATTTTTTGAAAAATATAGAGAAAATGGATTTAATTCTACTATAATTGATGCTAAAGAAATTGCAAATGAAATGGGAATTGAGCCTGTATTTCCTGTGAAGCATAGGGTTAAAAGAAAGAGACATTTTGATGAGATTCATGATACAGATAGAGAACAACAATCAACTCAAGAAGATTTTAGAACTGATTACTTTCTTGTCTTAGTTGATATGGCTCTTTCTCAATTGAAGAGTAGATTTGAACAAATGGAAAGTTTTGAATCTGTATTTGGCTTCTTATTTGATGCATCACGGTTGGTTTCATTGGATGACGAAGAAATGAAAAATTGTTGCTTGAAACTTGAACTTGCTTTGAAACATGGTGAGGTGTCTGATATTGATCCAAAATATTTGCTTTCTGAGTTACAAGTATCGCAGGAAATGCTACCAAATGAAGCATATGAAACAGGAAACCCATGGAATTCCATTAAAATTATGGAGTTTGCAAAAAAAATGGATATGATTTTATTGACTATACCTGTTACACTGGCATCTACAGAAAGAAGTTTTTCAAAATTAAAGTTATTAAAATCTTATTTACGGACAACAATGACTCAAGATAGGTTGAATGGTTTAGTAATCTTGAGTATTGAAAAGAATATGTTGAAAAATATTGAGCTTGAGCACATAATTGATGATTTTGCTTCTAAAAGTGCAAGAAGAAATCATTTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

252

Amino Acids

29.39

Weight (kDa)

5.63

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 178 - 228 9e-10 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 416
AcsI RAATTY 1 cut(s) 502
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 1 cut(s) 700
AluI AGCT 1 cut(s) 700
Alw21I GWGCWC 1 cut(s) 708
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 502
Asp700I GAANNNNTTC 1 cut(s) 589
AsuHPI GGTGA 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 708
BcoDI GTCTC 1 cut(s) 157
BfmI CTRYAG 1 cut(s) 576
BmsI GCATC 4 cut(s) 82, 316, 338, 581
BpuEI CTTGAG 4 cut(s) 195, 621, 685, 722
BsaBI GATNNNNATC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 497
Bse1I ACTGG 1 cut(s) 573
Bse8I GATNNNNATC 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 497
BseGI GGATG 1 cut(s) 355
BseJI GATNNNNATC 1 cut(s) 420
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 1 cut(s) 573
BsiHKAI GWGCWC 1 cut(s) 708
BsmAI GTCTC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 708
Bsp143I GATC 1 cut(s) 421
Bsp19I CCATGG 1 cut(s) 497
BspCNI CTCAG 1 cut(s) 433
BspHI TCATGA 1 cut(s) 181
BspPI GGATC 1 cut(s) 416
BsrI ACTGG 1 cut(s) 573
BssECI CCNNGG 1 cut(s) 497
BssMI GATC 1 cut(s) 421
BssT1I CCWWGG 1 cut(s) 497
Bst4CI ACNGT 1 cut(s) 336
Bst6I CTCTTC 1 cut(s) 266
BstAPI GCANNNNNTGC 1 cut(s) 463
BstDEI CTNAG 2 cut(s) 244, 441
BstDSI CCRYGG 1 cut(s) 497
BstF5I GGATG 1 cut(s) 355
BstKTI GATC 1 cut(s) 424
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 1 cut(s) 421
BstMWI GCNNNNNNNGC 1 cut(s) 463
BstSFI CTRYAG 1 cut(s) 576
BtgI CCRYGG 1 cut(s) 497
BtsCI GGATG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 566
CciI TCATGA 1 cut(s) 181
CviAII CATG 3 cut(s) 182, 401, 498
CviJI RGCY 4 cut(s) 127, 257, 315, 700
CviKI_1 RGCY 4 cut(s) 127, 257, 315, 700
DdeI CTNAG 2 cut(s) 244, 441
DpnI GATC 1 cut(s) 423
DpnII GATC 1 cut(s) 421
DraI TTTAAA 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 497
EcoRI GAATTC 1 cut(s) 502
EcoT14I CCWWGG 1 cut(s) 497
EcoT22I ATGCAT 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 3 cut(s) 185, 404, 501
FatI CATG 3 cut(s) 181, 400, 497
FauNDI CATATG 1 cut(s) 481
FokI GGATG 1 cut(s) 362
Hin1II CATG 3 cut(s) 185, 404, 501
HinfI GANTC 4 cut(s) 4, 178, 302, 634
HphI GGTGA 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 415, 442
Hpy188III TCNNGA 5 cut(s) 8, 182, 212, 638, 664
HpyCH4III ACNGT 1 cut(s) 336
HpyCH4V TGCA 4 cut(s) 107, 329, 527, 737
HpyF10VI GCNNNNNNNGC 1 cut(s) 463
HpyF3I CTNAG 2 cut(s) 244, 441
Hsp92II CATG 3 cut(s) 185, 404, 501
Kzo9I GATC 1 cut(s) 421
LpnPI CCDG 6 cut(s) 141, 150, 443, 474, 554, 573
LweI GCATC 4 cut(s) 82, 316, 338, 581
MaeIII GTNAC 2 cut(s) 444, 562
MalI GATC 1 cut(s) 423
MboI GATC 1 cut(s) 421
MboII GAAGA 4 cut(s) 227, 283, 368, 753
MfeI CAATTG 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 708
MlyI GAGTC 1 cut(s) 628
MnlI CCTC 1 cut(s) 400
Mph1103I ATGCAT 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 589
MseI TTAA 6 cut(s) 29, 75, 153, 510, 599, 608
MslI CAYNNNNRTG 1 cut(s) 171
MunI CAATTG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 463
NcoI CCATGG 1 cut(s) 497
NdeI CATATG 1 cut(s) 481
NdeII GATC 1 cut(s) 421
NlaIII CATG 3 cut(s) 185, 404, 501
NsiI ATGCAT 1 cut(s) 331
PagI TCATGA 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 589
PfeI GAWTC 3 cut(s) 4, 178, 302
PleI GAGTC 1 cut(s) 628
PpsI GAGTC 1 cut(s) 628
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 6 cut(s) 29, 75, 153, 510, 599, 608
Sau3AI GATC 1 cut(s) 421
SchI GAGTC 1 cut(s) 628
SduI GDGCHC 1 cut(s) 708
SetI ASST 4 cut(s) 411, 562, 647, 702
SfaNI GCATC 4 cut(s) 82, 316, 338, 581
SfcI CTRYAG 1 cut(s) 576
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 4 cut(s) 210, 636, 664, 701
SmoI CTYRAG 4 cut(s) 210, 636, 664, 701
SspI AATATT 2 cut(s) 431, 694
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 1 cut(s) 336
TfiI GAWTC 3 cut(s) 4, 178, 302
Tru1I TTAA 6 cut(s) 29, 75, 153, 510, 599, 608
Tru9I TTAA 6 cut(s) 29, 75, 153, 510, 599, 608
TscAI CASTG 1 cut(s) 573
TspDTI ATGAA 7 cut(s) 33, 126, 170, 333, 377, 489, 498
TspGWI ACGGA 1 cut(s) 637
TspRI CASTG 1 cut(s) 573
XapI RAATTY 1 cut(s) 502
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
XmnI GAANNNNTTC 1 cut(s) 589
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.