Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004209.1

Orthogroup ID

OG0000215

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 5769

Gene Structure 5769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004209.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

atgctacgaacaaaaacaatcaaagatgaaggcttaagaagttacttaaccacaagcttcttgctcgcgaccacgagccagcatattctgaacgacgttctggaagaagatgaggacaaccggagctggaggagaaaccaaagaaggaggtcgcctacggggaacaatctgaagaagaagcgtcaccgatcgatgtgcttgccggtcgccggaaaagagaagcaaaagagagatgcgttagttaagattcaagctggatctcttagtaagtacttcaacacaaataataaacaagcacagacttcagctggtccaaaaatacgtgagaatgagaatgagaaggatgttgaagaacatgatcagttaatgaaggaaaatgagagtgcagaatcaagtcaaggtcttaatgccaatgaaaatgatgatattagtcagcctataaatgatagtgttggtacggacgaaccaaatcttccagtgaatgaggaagaaaatatcattgttgaagatgatcaaaacaaagattcaagtgcaaaatttgactttccatttgaggttgatgatccaggaaattgggataagattaaacaaaatgtcagagattttttagtcgaaagagatcctaaaagagagaatgatcttacctttccggttgatgacttggggagacatttcagtcccacacattattttcgtgtctttcctaatggtgaaaagaagaacaggaggtggttgatttactcagtttcgttagacaaggtattttgcttttgttgtaaattgttcaagcaagaccacaacaagactttattgggtcaatttgctaatgaaggattgaatgattggaaaaatatgagtgcaaggcttgcaagccatgaaagaaatagtcaacacatcagttgctttactagttggattgaactggaaacaagattgaaaaagaatgcaacaattgatcaagctgtggaagaacaaataaagaaggagagagaacattggagacaggtactcttgagaatcctaactgttgtgaaaagactttcgaaaaataatttggcatttcgtggggataatgagaaagtgtatgagaagaagaatgggattttcttacaagtaattgagatgattgctgaatttgatccgctattagcaaatgaggtaaaaacttccatcattgcaacgatcaaagaagcaaagtacttttcagttatacttgattgcactccagatgcaagtgatgaggaacaaatgtctagtgttgtctgttgtgttgatgttacagcaagtccgattgtggtaagagaattatttttggaatttttaacggtggatgatacatcggggcttggactgtttaatgagcttgtaaatgcactgaacactcttacacttgatattggtgatatacgaggacagggatatgacaatggctctaatatgagaggaaaacataagggtgtgcagaagagacttcttgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FCS

Protein Analysis

493

Amino Acids

56.69

Weight (kDa)

5.76

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca	FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica	MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis	pycom05g13550 pycom11g18320
rosa_chinensis	RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora	Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii	Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa	Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha	Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana	Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	675
AccII	CGCG	1 cut(s)	68
AciI	CCGC	1 cut(s)	1142
AclWI	GGATC	4 cut(s)	265, 557, 614, 1133
AcsI	RAATTY	3 cut(s)	536, 1133, 1316
AcuI	CTGAAG	2 cut(s)	191, 288
AfaI	GTAC	4 cut(s)	272, 457, 1008, 1199
AfiI	CCNNNNNNNGG	1 cut(s)	209
AflII	CTTAAG	1 cut(s)	34
AgsI	TTSAA	9 cut(s)	251, 277, 350, 506, 528, 787, 838, 920, 937
AhlI	ACTAGT	1 cut(s)	908
AjnI	CCWGG	1 cut(s)	565
AjuI	GAANNNNNNNTTGG	2 cut(s)	1037, 1069
AluBI	AGCT	6 cut(s)	57, 126, 254, 308, 962, 1363
AluI	AGCT	6 cut(s)	57, 126, 254, 308, 962, 1363
Alw26I	GTCTC	3 cut(s)	661, 994, 1462
AlwI	GGATC	4 cut(s)	265, 557, 614, 1133
ApoI	RAATTY	3 cut(s)	536, 1133, 1316
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	3 cut(s)	176, 722, 1412
AsuII	TTCGAA	1 cut(s)	1043
AvaII	GGWCC	1 cut(s)	311
BauI	CACGAG	1 cut(s)	73
BccI	CCATC	1 cut(s)	1178
BcgI	CGANNNNNNTGC	4 cut(s)	177, 181, 211, 215
BciT130I	CCWGG	1 cut(s)	567
BclI	TGATCA	3 cut(s)	358, 511, 955
BcoDI	GTCTC	3 cut(s)	661, 994, 1462
BcuI	ACTAGT	1 cut(s)	908
BfaI	CTAG	2 cut(s)	909, 1254
BfrI	CTTAAG	1 cut(s)	34
BmcAI	AGTACT	2 cut(s)	272, 1199
Bme1390I	CCNGG	1 cut(s)	567
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	2 cut(s)	223, 1219
BpmI	CTGGAG	2 cut(s)	148, 1209
Bpu14I	TTCGAA	1 cut(s)	1043
BpuEI	CTTGAG	1 cut(s)	1033
Bsa29I	ATCGAT	1 cut(s)	191
BsaAI	YACGTR	1 cut(s)	323
BsaWI	WCCGGW	2 cut(s)	120, 649
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	2 cut(s)	476, 927
Bse3DI	GCAATG	1 cut(s)	1173
BseBI	CCWGG	1 cut(s)	567
BseCI	ATCGAT	1 cut(s)	191
BseGI	GGATG	2 cut(s)	349, 1336
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	1 cut(s)	1173
BseMII	CTCAG	1 cut(s)	756
BseNI	ACTGG	2 cut(s)	476, 927
BseRI	GAGGAG	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	405
Bsh1236I	CGCG	1 cut(s)	68
Bsh1285I	CGRYCG	2 cut(s)	191, 207
BshVI	ATCGAT	1 cut(s)	191
BsiEI	CGRYCG	2 cut(s)	191, 207
BsiSI	CCGG	4 cut(s)	121, 203, 210, 650
BslFI	GGGAC	1 cut(s)	663
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	3 cut(s)	661, 994, 1462
BsmFI	GGGAC	1 cut(s)	663
BsmI	GAATGC	1 cut(s)	949
Bsp119I	TTCGAA	1 cut(s)	1043
Bsp68I	TCGCGA	1 cut(s)	68
BspACI	CCGC	1 cut(s)	1142
BspCNI	CTCAG	1 cut(s)	755
BspDI	ATCGAT	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	68
BspPI	GGATC	4 cut(s)	265, 557, 614, 1133
BspT104I	TTCGAA	1 cut(s)	1043
BspTI	CTTAAG	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	1173
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	476, 927
BssAI	RCCGGY	1 cut(s)	202
BssSI	CACGAG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	3 cut(s)	1027, 1327, 1353
Bst6I	CTCTTC	1 cut(s)	1460
BstAFI	CTTAAG	1 cut(s)	34
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstBAI	YACGTR	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	1043
BstC8I	GCNNGC	5 cut(s)	66, 80, 200, 867, 871
BstDEI	CTNAG	2 cut(s)	263, 742
BstF5I	GGATG	2 cut(s)	349, 1336
BstFNI	CGCG	1 cut(s)	68
BstMAI	GTCTC	3 cut(s)	661, 994, 1462
BstMCI	CGRYCG	2 cut(s)	191, 207
BstMWI	GCNNNNNNNGC	1 cut(s)	866
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	565
BstUI	CGCG	1 cut(s)	68
BstX2I	RGATCY	2 cut(s)	257, 619
BstXI	CCANNNNNNTGG	1 cut(s)	573
BstYI	RGATCY	2 cut(s)	257, 619
Bsu15I	ATCGAT	1 cut(s)	191
BsuTUI	ATCGAT	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	349, 1336
BtsIMutI	CAGTG	2 cut(s)	483, 1373
BtuMI	TCGCGA	1 cut(s)	68
Cac8I	GCNNGC	5 cut(s)	66, 80, 200, 867, 871
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	311
ClaI	ATCGAT	1 cut(s)	191
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	4 cut(s)	271, 456, 1007, 1198
CviAII	CATG	2 cut(s)	356, 875
CviQI	GTAC	4 cut(s)	271, 456, 1007, 1198
DdeI	CTNAG	2 cut(s)	263, 742
DrdI	GACNNNNNNGTC	1 cut(s)	675
DseDI	GACNNNNNNGTC	1 cut(s)	675
Eam1104I	CTCTTC	1 cut(s)	1460
EarI	CTCTTC	1 cut(s)	1460
Eco47I	GGWCC	1 cut(s)	311
Eco57I	CTGAAG	2 cut(s)	191, 288
EcoRII	CCWGG	1 cut(s)	565
FaeI	CATG	2 cut(s)	359, 878
FaqI	GGGAC	1 cut(s)	663
FatI	CATG	2 cut(s)	355, 874
FbaI	TGATCA	3 cut(s)	358, 511, 955
FokI	GGATG	2 cut(s)	356, 1343
FspBI	CTAG	2 cut(s)	909, 1254
GsuI	CTGGAG	2 cut(s)	148, 1209
HapII	CCGG	4 cut(s)	121, 203, 210, 650
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	359, 878
HincII	GTYRAC	1 cut(s)	890
HindII	GTYRAC	1 cut(s)	890
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	4 cut(s)	247, 389, 524, 1017
HpaII	CCGG	4 cut(s)	121, 203, 210, 650
HphI	GGTGA	3 cut(s)	176, 722, 1412
Hpy166II	GTNNAC	1 cut(s)	890
Hpy188I	TCNGA	4 cut(s)	90, 171, 599, 1290
Hpy188III	TCNNGA	5 cut(s)	67, 101, 1012, 1226, 1475
Hpy8I	GTNNAC	1 cut(s)	890
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	6 cut(s)	23, 138, 334, 364, 824, 976
HpyCH4III	ACNGT	3 cut(s)	1027, 1327, 1353
HpyCH4IV	ACGT	2 cut(s)	96, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	866
HpyF3I	CTNAG	2 cut(s)	263, 742
HpySE526I	ACGT	2 cut(s)	96, 322
Hsp92II	CATG	2 cut(s)	359, 878
Ksp22I	TGATCA	3 cut(s)	358, 511, 955
LmnI	GCTCC	1 cut(s)	123
LweI	GCATC	2 cut(s)	223, 1219
MaeI	CTAG	2 cut(s)	909, 1254
MaeII	ACGT	2 cut(s)	96, 322
MaeIII	GTNAC	3 cut(s)	41, 182, 1276
MfeI	CAATTG	1 cut(s)	951
MflI	RGATCY	2 cut(s)	257, 619
MmeI	TCCRAC	1 cut(s)	893
MseI	TTAA	8 cut(s)	35, 47, 243, 365, 405, 585, 1322, 1356
MslI	CAYNNNNRTG	1 cut(s)	1455
MspA1I	CMGCKG	1 cut(s)	308
MspCI	CTTAAG	1 cut(s)	34
MspI	CCGG	4 cut(s)	121, 203, 210, 650
MspR9I	CCNGG	1 cut(s)	567
MunI	CAATTG	1 cut(s)	951
Mva1269I	GAATGC	1 cut(s)	949
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	866
NlaIII	CATG	2 cut(s)	359, 878
NmuCI	GTSAC	1 cut(s)	182
NruI	TCGCGA	1 cut(s)	68
NspV	TTCGAA	1 cut(s)	1043
PctI	GAATGC	1 cut(s)	949
PfeI	GAWTC	4 cut(s)	247, 389, 524, 1017
PfoI	TCCNGGA	1 cut(s)	565
Ple19I	CGATCG	1 cut(s)	191
Ppu21I	YACGTR	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspPI	GGNCC	1 cut(s)	311
PsuI	RGATCY	2 cut(s)	257, 619
PvuI	CGATCG	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	308
RruI	TCGCGA	1 cut(s)	68
RsaI	GTAC	4 cut(s)	272, 457, 1008, 1199
RsaNI	GTAC	4 cut(s)	271, 456, 1007, 1198
RseI	CAYNNNNRTG	1 cut(s)	1455
SaqAI	TTAA	8 cut(s)	35, 47, 243, 365, 405, 585, 1322, 1356
Sau96I	GGNCC	1 cut(s)	311
ScaI	AGTACT	2 cut(s)	272, 1199
ScrFI	CCNGG	1 cut(s)	567
SfaNI	GCATC	2 cut(s)	223, 1219
SfuI	TTCGAA	1 cut(s)	1043
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	1455
SmlI	CTYRAG	3 cut(s)	34, 1012, 1475
SmoI	CTYRAG	3 cut(s)	34, 1012, 1475
SpeI	ACTAGT	1 cut(s)	908
SsiI	CCGC	1 cut(s)	1142
SspMI	CTAG	2 cut(s)	909, 1254
StyD4I	CCNGG	1 cut(s)	565
TaaI	ACNGT	3 cut(s)	1027, 1327, 1353
TaiI	ACGT	2 cut(s)	99, 325
TaqI	TCGA	3 cut(s)	191, 612, 1043
TatI	WGTACW	2 cut(s)	270, 1197
TfiI	GAWTC	4 cut(s)	247, 389, 524, 1017
Tru1I	TTAA	8 cut(s)	35, 47, 243, 365, 405, 585, 1322, 1356
Tru9I	TTAA	8 cut(s)	35, 47, 243, 365, 405, 585, 1322, 1356
TscAI	CASTG	2 cut(s)	483, 1380
TseFI	GTSAC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	5 cut(s)	42, 383, 429, 843, 891
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	2 cut(s)	483, 1380
Vha464I	CTTAAG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	3 cut(s)	536, 1133, 1316
XspI	CTAG	2 cut(s)	909, 1254
ZrmI	AGTACT	2 cut(s)	272, 1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.