Rw4G022920

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000215
Physical Location & Seq
Forward (+)
48429457 .. 48430224
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G022920.1

Sequence Viewer

Length: 768 bp
ATGGATATTGATGCTGCTCTTAAAGAATTAAAAGGACTTATTTTGTTTCTTGAAGAGTATAGAGAATCCGGACTTGATATGGCCATGGATGAAGCTAAACAAATGGCAAGTGAATTGGGAATTGAAGCTGTATTCCGAGAAAAACGCATCATTCGAAGAAAGAAGCAGTTTGATGACAGTGGCAGTGATGAGGTAATGCAATCATCTGAAGAATCTTTTAGAGTTAATTACTTCCTCTTTATAATTGATCAAGCCCGTTCTTCACTTCAAACTCGGTTCGAACAATTTCAAAAATATGAAGAAATCTTTGGGTTTTTGTTTAGTTTGGAGAGGTTAAAGTCTGCTAATGATCATAGCTTGATGATGTCCTGTGACAATCTTGAAAATTCCTTGACACATAATAGCCATTCAGATATTGATGGATATGATTTATTTTTGGAGTTAAAACTCTTGAAGTGCTCTTTACCAAGAGACACAAGGAGAGCAATTGATGTGCTGAATTATTTGAAGAAGATGGATGGTTGTTTTCCGAATGCTTATGTTGCTTACAGAATTTTGTTGACTATACCAGTTACAGTTGCATCTGCAGAAAGAAGCTTCTCCAAGTTGAAGTTGATCAAGACTTATCTTCGATCAACTATGTCACAAGAAAGATTGAATGGATTGGCTATGTTATCAATTGAAAAAAAAGTGGTTGAAAAACTTGATTATGCAAACATAATTACTACGTTTGCCTCTAAAACTGCAAGGCGAGTGGTATTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimer_Tnp_hAT

Protein Analysis

255

Amino Acids

29.55

Weight (kDa)

6.86

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 155 - 229 1.5e-19 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AccIII TCCGGA 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 2 cut(s) 385, 552
AcuI CTGAAG 1 cut(s) 228
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 4 cut(s) 95, 128, 357, 597
AluI AGCT 4 cut(s) 95, 128, 357, 597
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 1 cut(s) 465
Aor13HI TCCGGA 1 cut(s) 68
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 2 cut(s) 385, 552
Asp700I GAANNNNTTC 1 cut(s) 285
AsuII TTCGAA 2 cut(s) 154, 279
BalI TGGCCA 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 461
BccI CCATC 3 cut(s) 413, 508, 512
BclI TGATCA 3 cut(s) 247, 349, 615
BcoDI GTCTC 1 cut(s) 465
BfmI CTRYAG 1 cut(s) 585
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmsI GCATC 2 cut(s) 156, 590
Bpu14I TTCGAA 2 cut(s) 154, 279
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 569
BseAI TCCGGA 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 94, 523
BseNI ACTGG 1 cut(s) 569
BshFI GGCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 461
BsiSI CCGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 465
BsmI GAATGC 1 cut(s) 538
BsnI GGCC 1 cut(s) 83
Bsp119I TTCGAA 2 cut(s) 154, 279
Bsp1286I GDGCHC 1 cut(s) 461
Bsp13I TCCGGA 1 cut(s) 68
Bsp143I GATC 4 cut(s) 247, 349, 615, 632
Bsp19I CCATGG 1 cut(s) 84
BspANI GGCC 1 cut(s) 83
BspEI TCCGGA 1 cut(s) 68
BspMAI CTGCAG 1 cut(s) 589
BspT104I TTCGAA 2 cut(s) 154, 279
BsrI ACTGG 1 cut(s) 569
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 4 cut(s) 247, 349, 615, 632
BssT1I CCWWGG 1 cut(s) 84
Bst4CI ACNGT 2 cut(s) 179, 577
Bst6I CTCTTC 1 cut(s) 48
BstBI TTCGAA 2 cut(s) 154, 279
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 94, 523
BstKTI GATC 4 cut(s) 250, 352, 618, 635
BstMAI GTCTC 1 cut(s) 465
BstMBI GATC 4 cut(s) 247, 349, 615, 632
BstMWI GCNNNNNNNGC 1 cut(s) 542
BstSFI CTRYAG 1 cut(s) 585
BsuRI GGCC 1 cut(s) 83
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 2 cut(s) 94, 523
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 184, 190
CspCI CAANNNNNGTGG 1 cut(s) 735
CviAII CATG 1 cut(s) 85
CviJI RGCY 8 cut(s) 83, 95, 128, 254, 357, 405, 597, 668
CviKI_1 RGCY 8 cut(s) 83, 95, 128, 254, 357, 405, 597, 668
DpnI GATC 4 cut(s) 249, 351, 617, 634
DpnII GATC 4 cut(s) 247, 349, 615, 632
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 88
FatI CATG 1 cut(s) 84
FbaI TGATCA 3 cut(s) 247, 349, 615
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 2 cut(s) 101, 530
Fsp4HI GCNGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 1 cut(s) 83
HapII CCGG 1 cut(s) 69
Hin1II CATG 1 cut(s) 88
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HindIII AAGCTT 1 cut(s) 595
HinfI GANTC 2 cut(s) 65, 212
HpaII CCGG 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 561
Hpy188I TCNGA 4 cut(s) 137, 208, 412, 531
Hpy188III TCNNGA 5 cut(s) 50, 69, 380, 451, 619
Hpy8I GTNNAC 1 cut(s) 561
HpyCH4III ACNGT 2 cut(s) 179, 577
HpyCH4IV ACGT 1 cut(s) 728
HpyCH4V TGCA 5 cut(s) 199, 581, 587, 713, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 542
HpySE526I ACGT 1 cut(s) 728
Hsp92II CATG 1 cut(s) 88
Kpn2I TCCGGA 1 cut(s) 68
Ksp22I TGATCA 3 cut(s) 247, 349, 615
Kzo9I GATC 4 cut(s) 247, 349, 615, 632
LpnPI CCDG 3 cut(s) 82, 382, 582
LweI GCATC 2 cut(s) 156, 590
MaeII ACGT 1 cut(s) 728
MaeIII GTNAC 3 cut(s) 371, 571, 642
MalI GATC 4 cut(s) 249, 351, 617, 634
MboI GATC 4 cut(s) 247, 349, 615, 632
MboII GAAGA 8 cut(s) 65, 168, 221, 252, 311, 520, 523, 620
MfeI CAATTG 2 cut(s) 486, 678
MhlI GDGCHC 1 cut(s) 461
MlsI TGGCCA 1 cut(s) 83
MluNI TGGCCA 1 cut(s) 83
MnlI CCTC 4 cut(s) 184, 245, 324, 745
Mox20I TGGCCA 1 cut(s) 83
MroI TCCGGA 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 285
MscI TGGCCA 1 cut(s) 83
MseI TTAA 6 cut(s) 21, 29, 225, 335, 443, 762
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 1 cut(s) 69
MunI CAATTG 2 cut(s) 486, 678
Mva1269I GAATGC 1 cut(s) 538
MwoI GCNNNNNNNGC 1 cut(s) 542
NcoI CCATGG 1 cut(s) 84
NdeII GATC 4 cut(s) 247, 349, 615, 632
NlaIII CATG 1 cut(s) 88
NmuCI GTSAC 2 cut(s) 371, 642
NspV TTCGAA 2 cut(s) 154, 279
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PctI GAATGC 1 cut(s) 538
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 2 cut(s) 65, 212
PkrI GCNGC 1 cut(s) 16
PsiI TTATAA 1 cut(s) 242
PstI CTGCAG 1 cut(s) 589
SaqAI TTAA 6 cut(s) 21, 29, 225, 335, 443, 762
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 4 cut(s) 247, 349, 615, 632
SduI GDGCHC 1 cut(s) 461
SetI ASST 7 cut(s) 97, 130, 195, 335, 359, 599, 731
SfaNI GCATC 2 cut(s) 156, 590
SfcI CTRYAG 1 cut(s) 585
SfuI TTCGAA 2 cut(s) 154, 279
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 179, 577
TaiI ACGT 1 cut(s) 731
TaqI TCGA 3 cut(s) 154, 279, 631
TfiI GAWTC 2 cut(s) 65, 212
Tru1I TTAA 6 cut(s) 21, 29, 225, 335, 443, 762
Tru9I TTAA 6 cut(s) 21, 29, 225, 335, 443, 762
TscAI CASTG 2 cut(s) 184, 190
TseFI GTSAC 2 cut(s) 371, 642
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 2 cut(s) 371, 642
TspDTI ATGAA 2 cut(s) 105, 312
TspRI CASTG 2 cut(s) 184, 190
XapI RAATTY 2 cut(s) 385, 552
XmnI GAANNNNTTC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.