RchiOBHm_Chr7g0230921

Domain of unknown function (DUF4371)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000215
Physical Location & Seq
Reverse (-)
54568840 .. 54570617
1778 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20691

Sequence Viewer

Length: 804 bp
ATGGTTGTGTTAAAATTTAGAAGCATGCCTCCTAAAAGAAAATGTTTATCTGGATATGCAAATCATTTAAAGAAGAAAAAAGATGCAGAGTTGGTTCAATCTTTAAGGGGAAGTCTTGATAGGTTCATTACTAGAGAACCAGAAGGTTTGGGTGAAGATTTAGTTAATGAAGAGGCACAAGAGCACACTGAGAGAGAATATAATGTGGAAGAGCACACTAATAGGGAAAATAATGTGGAAGAGCACACTGATGGCAATGAAGTTGTAGATGATTTGGATCATGGTGAAAATGAGAATGACAAGGGACATGATGATAATGTGAATGATGCGGATGTGACTCCCGTAAACATTTTTTATCCAAGAACTTGGGATAGCTTGGATAAAAAGTTGATAGATTTGCTGGTAGAAAAGGGTCCTCTTAGAGATCTTTCCATAGAGAATGACCCTCAAGACAAGTTCAATAGACATTTCAGTTCAACGTTTTACATTCAGTTTTTAGGAAATGGAGAGAAATATGACAGAGAGTGGCTAGTGTACTCAAAGGAGCTTGATAAGGTCTTTTGTTTTTGCTGCAAGTTGCTTAAAAGGGGGCCAATGCAGCTAAGAAGGCAAGGAGATAGATTTTCAAATAAATATCAATCAACACCACTGGAAGAACATATTATTTTGAGGGTTTTAGATCAAGCACCTTTTTGTAATATTTTTTGCTGCAAACTTTACACTTGTATTGACTATTTAGCCTCTGTTGTAGGCTCATCTAATGTTGGCTATTTGATTTTATATTGTGAGTTTGTTCAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

267

Amino Acids

31.14

Weight (kDa)

5.14

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 329
AclI AACGTT 1 cut(s) 479
AclWI GGATC 1 cut(s) 285
AcsI RAATTY 1 cut(s) 14
AfaI GTAC 1 cut(s) 536
AgsI TTSAA 5 cut(s) 98, 460, 477, 627, 797
AluBI AGCT 3 cut(s) 375, 547, 601
AluI AGCT 3 cut(s) 375, 547, 601
Alw21I GWGCWC 3 cut(s) 186, 216, 246
AlwI GGATC 1 cut(s) 285
AoxI GGCC 1 cut(s) 590
ApeKI GCWGC 3 cut(s) 570, 598, 708
ApoI RAATTY 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 413, 590
AsuHPI GGTGA 2 cut(s) 164, 296
AvaII GGWCC 1 cut(s) 413
Bbv12I GWGCWC 3 cut(s) 186, 216, 246
BbvI GCAGC 3 cut(s) 557, 610, 695
BccI CCATC 1 cut(s) 245
BfaI CTAG 2 cut(s) 132, 530
BglII AGATCT 1 cut(s) 424
BisI GCNGC 3 cut(s) 571, 599, 709
BlsI GCNGC 3 cut(s) 572, 600, 710
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 2 cut(s) 413, 590
BmiI GGNNCC 2 cut(s) 414, 591
BmsI GCATC 2 cut(s) 73, 316
BpuEI CTTGAG 1 cut(s) 432
BsaBI GATNNNNATC 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 654
Bse3DI GCAATG 1 cut(s) 262
Bse8I GATNNNNATC 1 cut(s) 276
BseGI GGATG 1 cut(s) 337
BseJI GATNNNNATC 1 cut(s) 276
BseMI GCAATG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 654
BseXI GCAGC 3 cut(s) 557, 610, 695
BshFI GGCC 1 cut(s) 592
BsiHKAI GWGCWC 3 cut(s) 186, 216, 246
BslFI GGGAC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 1 cut(s) 592
Bsp1286I GDGCHC 3 cut(s) 186, 216, 246
Bsp143I GATC 3 cut(s) 277, 424, 679
BspACI CCGC 1 cut(s) 329
BspANI GGCC 1 cut(s) 592
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 414, 591
BspPI GGATC 1 cut(s) 285
BspQI GCTCTTC 2 cut(s) 204, 234
BsrDI GCAATG 1 cut(s) 262
BsrI ACTGG 1 cut(s) 654
BssMI GATC 3 cut(s) 277, 424, 679
Bst6I CTCTTC 3 cut(s) 165, 204, 234
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 3 cut(s) 189, 419, 602
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 3 cut(s) 280, 427, 682
BstMBI GATC 3 cut(s) 277, 424, 679
BstMWI GCNNNNNNNGC 2 cut(s) 598, 607
BstNSI RCATGY 1 cut(s) 28
BstV1I GCAGC 3 cut(s) 557, 610, 695
BstX2I RGATCY 1 cut(s) 424
BstXI CCANNNNNNTGG 1 cut(s) 366
BstYI RGATCY 1 cut(s) 424
BsuRI GGCC 1 cut(s) 592
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 3 cut(s) 186, 246, 647
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 413, 590
Csp6I GTAC 1 cut(s) 535
CviAII CATG 3 cut(s) 25, 281, 308
CviJI RGCY 8 cut(s) 375, 529, 547, 592, 601, 740, 753, 768
CviKI_1 RGCY 8 cut(s) 375, 529, 547, 592, 601, 740, 753, 768
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 3 cut(s) 189, 419, 602
DpnI GATC 3 cut(s) 279, 426, 681
DpnII GATC 3 cut(s) 277, 424, 679
DraI TTTAAA 1 cut(s) 69
Eam1104I CTCTTC 3 cut(s) 165, 204, 234
EarI CTCTTC 3 cut(s) 165, 204, 234
Eco47I GGWCC 1 cut(s) 413
EcoO109I RGGNCCY 1 cut(s) 413
FaeI CATG 3 cut(s) 28, 284, 311
FaqI GGGAC 1 cut(s) 318
FatI CATG 3 cut(s) 24, 280, 307
Fnu4HI GCNGC 3 cut(s) 571, 599, 709
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 3 cut(s) 571, 599, 709
FspBI CTAG 2 cut(s) 132, 530
GluI GCNGC 3 cut(s) 571, 599, 709
HaeIII GGCC 1 cut(s) 592
Hin1II CATG 3 cut(s) 28, 284, 311
HinfI GANTC 1 cut(s) 337
HphI GGTGA 2 cut(s) 164, 296
Hpy166II GTNNAC 2 cut(s) 346, 535
Hpy188III TCNNGA 3 cut(s) 51, 116, 449
Hpy8I GTNNAC 2 cut(s) 346, 535
HpyAV CCTTC 2 cut(s) 137, 600
HpyCH4IV ACGT 1 cut(s) 479
HpyCH4V TGCA 5 cut(s) 59, 86, 573, 598, 711
HpyF10VI GCNNNNNNNGC 2 cut(s) 598, 607
HpyF3I CTNAG 3 cut(s) 189, 419, 602
HpySE526I ACGT 1 cut(s) 479
Hsp92II CATG 3 cut(s) 28, 284, 311
Kzo9I GATC 3 cut(s) 277, 424, 679
LguI GCTCTTC 2 cut(s) 204, 234
LmnI GCTCC 1 cut(s) 544
LpnPI CCDG 4 cut(s) 36, 153, 386, 635
Lsp1109I GCAGC 3 cut(s) 557, 610, 695
LweI GCATC 2 cut(s) 73, 316
MaeI CTAG 2 cut(s) 132, 530
MaeII ACGT 1 cut(s) 479
MaeIII GTNAC 1 cut(s) 334
MalI GATC 3 cut(s) 279, 426, 681
MboI GATC 3 cut(s) 277, 424, 679
MboII GAAGA 6 cut(s) 85, 167, 182, 221, 251, 665
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 3 cut(s) 186, 216, 246
MluCI AATT 1 cut(s) 14
MlyI GAGTC 1 cut(s) 331
MnlI CCTC 6 cut(s) 39, 166, 426, 456, 663, 751
MseI TTAA 5 cut(s) 11, 68, 104, 165, 582
MslI CAYNNNNRTG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 598, 607
NdeII GATC 3 cut(s) 277, 424, 679
NlaIII CATG 3 cut(s) 28, 284, 311
NlaIV GGNNCC 2 cut(s) 414, 591
NmuCI GTSAC 1 cut(s) 334
NspI RCATGY 1 cut(s) 28
PaeI GCATGC 1 cut(s) 28
PciSI GCTCTTC 2 cut(s) 204, 234
PkrI GCNGC 3 cut(s) 572, 600, 710
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PpuMI RGGWCCY 1 cut(s) 413
Psp1406I AACGTT 1 cut(s) 479
Psp5II RGGWCCY 1 cut(s) 413
PspN4I GGNNCC 2 cut(s) 414, 591
PspPI GGNCC 2 cut(s) 413, 590
PspPPI RGGWCCY 1 cut(s) 413
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
RseI CAYNNNNRTG 1 cut(s) 249
SapI GCTCTTC 2 cut(s) 204, 234
SaqAI TTAA 5 cut(s) 11, 68, 104, 165, 582
SatI GCNGC 3 cut(s) 571, 599, 709
Sau3AI GATC 3 cut(s) 277, 424, 679
Sau96I GGNCC 2 cut(s) 413, 590
SchI GAGTC 1 cut(s) 331
SduI GDGCHC 3 cut(s) 186, 216, 246
SetI ASST 8 cut(s) 125, 148, 377, 482, 549, 558, 603, 691
SfaNI GCATC 2 cut(s) 73, 316
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 447
SmoI CTYRAG 1 cut(s) 447
SphI GCATGC 1 cut(s) 28
Sse9I AATT 1 cut(s) 14
SsiI CCGC 1 cut(s) 329
SspI AATATT 1 cut(s) 700
SspMI CTAG 2 cut(s) 132, 530
TaiI ACGT 1 cut(s) 482
TasI AATT 1 cut(s) 14
TatI WGTACW 1 cut(s) 534
Tru1I TTAA 5 cut(s) 11, 68, 104, 165, 582
Tru9I TTAA 5 cut(s) 11, 68, 104, 165, 582
TscAI CASTG 3 cut(s) 193, 253, 654
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 3 cut(s) 570, 598, 708
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 3 cut(s) 115, 183, 273
TspRI CASTG 3 cut(s) 193, 253, 654
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 1 cut(s) 14
XceI RCATGY 1 cut(s) 28
XspI CTAG 2 cut(s) 132, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.