Rmu_sc0014780.1_g000001

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014780.1
OG0000215
Physical Location & Seq
Reverse (-)
698 .. 2614
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014780.1_g000001.1.cds

Sequence Viewer

Length: 1653 bp
atgaatgctcatgataatcatggtgaagaagaaagagagcatatgattgacactgagaatgaagataaactcatggatgaggaagataatgatagtatggatcaagatgtccaaaatgaagatttcaatgagcaaattaactttcctttgaatgttgatgacccaggatacaaagattggaagaaccttggtcggaggcttaagggtcatgaaacaagtaatgtacatgcttattgtatgagtagatggattgaattgaaaaagagactacaaaagaatcagacaattgataaaagctggcaagaacagattgtgaaagagaaagagcattggagacaagtattactcaggataattgctgttgtcaaaagacttgcaaaaaataatttggcatttcgtggagatagtgagaagctttatgtggagaataatggaatttttttacaaatgattgagatgcttgctgaatttgatctaacaatgcaagagcatgttcgacgcattcaaagtcatgagacacactactattatctcagtcacagaattcaaaatgaaatggtacaaatgttagcaagtgagataaaacaatcaattgttacaagtatcaaagaagcaaaatacttttccattattgtggattgcactcccgatgtgagtcatgaagagcaaatgtctcttgtagtacggtgtgtggatgtttcttcaaagcctataatggtagaagagttctggctagaattcttgaaagtagatgatacgtcaggtcttgggctttttactgagattacaaatgcattgagctctcttcaacttgatattgatgatataagaggacaaggatatgacaatggagctaatattaaaggaaaacacaaaggtgttcaaatgaggcttcttgaagtaaatcctaaggcattctacactccatgtggttgtcatagtctcaatcttgcactttttaatccgttgtcacagacatgttgggagagtcatgttgaaagtgttaaacccataatatttcaagctcgtaaaataagagatgttttaattcacttggtagaagttagtgaagatccgaagacaaagagtgaagctgagtcgttagcaatatttgaaatggagaactttgaattcttgcttggcatggttatttggtacaagttattatttgccatcaatactgttagcaaaattcttcaaactgaagacatgcatattgattttgccatcacagaactaaagaaacttatttcttctcttgagaattttagagaaattgggtttgaggaggccatggttaacgctaagaagatcgcaaatgaaatggagattgaagctgtatttcgtgaaaagcgagtcattcggagaaagagacaatttgatgagagtgctagtgaagaagtgacacaatcagctgaagaatcattccgagttaattacttcacatatatcgttgatcaagctttttcttcacttagaactcggtttgaacagtttcaaaaatatgaagaactttttgggttcttattcgatgtagagaagttgaaatgttcagatgatgatatcttgaagaagtattgtgctaatcttgaaaattctttgacacatggcgggatctctgacattaatgggaagaactatattcagaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

550

Amino Acids

64.32

Weight (kDa)

5.1

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1611
AclWI GGATC 3 cut(s) 108, 1067, 1622
AcsI RAATTY 8 cut(s) 435, 467, 543, 737, 1130, 1191, 1264, 1594
AcuI CTGAAG 2 cut(s) 1224, 1437
AfaI GTAC 4 cut(s) 225, 561, 684, 1157
AflII CTTAAG 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 977
AjnI CCWGG 1 cut(s) 163
AjuI GAANNNNNNNTTGG 4 cut(s) 1122, 1154, 1500, 1532
AleI CACNNNNGTG 1 cut(s) 876
AluBI AGCT 9 cut(s) 297, 415, 801, 854, 1025, 1094, 1337, 1415, 1463
AluI AGCT 9 cut(s) 297, 415, 801, 854, 1025, 1094, 1337, 1415, 1463
Alw21I GWGCWC 1 cut(s) 803
Alw26I GTCTC 6 cut(s) 259, 328, 509, 678, 947, 1366
AlwI GGATC 3 cut(s) 108, 1067, 1622
AoxI GGCC 1 cut(s) 1290
ApoI RAATTY 8 cut(s) 435, 467, 543, 737, 1130, 1191, 1264, 1594
AseI ATTAAT 1 cut(s) 1626
Asp700I GAANNNNTTC 1 cut(s) 1494
AsuHPI GGTGA 1 cut(s) 35
AxyI CCTNAGG 1 cut(s) 909
BaeI ACNNNNGTAYC 2 cut(s) 551, 584
BanII GRGCYC 1 cut(s) 803
BbsI GAAGAC 2 cut(s) 1085, 1212
Bbv12I GWGCWC 1 cut(s) 803
BccI CCATC 3 cut(s) 240, 1181, 1235
BciT130I CCWGG 1 cut(s) 165
BciVI GTATCC 1 cut(s) 161
BclI TGATCA 1 cut(s) 1456
BcoDI GTCTC 6 cut(s) 259, 328, 509, 678, 947, 1366
BfaI CTAG 2 cut(s) 734, 1392
BfrI CTTAAG 1 cut(s) 200
BfuI GTATCC 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 447
BpiI GAAGAC 2 cut(s) 1085, 1212
BpuEI CTTGAG 1 cut(s) 1280
BsaJI CCNNGG 3 cut(s) 163, 187, 1293
Bse21I CCTNAGG 1 cut(s) 909
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 3 cut(s) 163, 187, 1293
BseGI GGATG 2 cut(s) 82, 700
BseMII CTCAG 5 cut(s) 45, 361, 547, 771, 1086
BseRI GAGGAG 1 cut(s) 1301
BshFI GGCC 1 cut(s) 1292
BsiHKAI GWGCWC 1 cut(s) 803
BsmAI GTCTC 6 cut(s) 259, 328, 509, 678, 947, 1366
BsmI GAATGC 3 cut(s) 10, 501, 914
BsnI GGCC 1 cut(s) 1292
Bsp1286I GDGCHC 1 cut(s) 803
Bsp1407I TGTACA 1 cut(s) 223
Bsp143I GATC 6 cut(s) 100, 472, 1072, 1311, 1456, 1614
Bsp19I CCATGG 1 cut(s) 1293
BspACI CCGC 1 cut(s) 1611
BspANI GGCC 1 cut(s) 1292
BspCNI CTCAG 5 cut(s) 46, 360, 546, 772, 1087
BspHI TCATGA 4 cut(s) 10, 208, 511, 658
BspPI GGATC 3 cut(s) 108, 1067, 1622
BspQI GCTCTTC 1 cut(s) 657
BspTI CTTAAG 1 cut(s) 200
BsrGI TGTACA 1 cut(s) 223
BssECI CCNNGG 3 cut(s) 163, 187, 1293
BssMI GATC 6 cut(s) 100, 472, 1072, 1311, 1456, 1614
BssT1I CCWWGG 2 cut(s) 187, 1293
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 3 cut(s) 687, 1183, 1494
Bst6I CTCTTC 3 cut(s) 657, 717, 810
BstAFI CTTAAG 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 223
BstC8I GCNNGC 2 cut(s) 299, 462
BstDEI CTNAG 8 cut(s) 54, 347, 533, 780, 909, 1095, 1305, 1475
BstDSI CCRYGG 1 cut(s) 1293
BstF5I GGATG 2 cut(s) 82, 700
BstKTI GATC 6 cut(s) 103, 475, 1075, 1314, 1459, 1617
BstMAI GTCTC 6 cut(s) 259, 328, 509, 678, 947, 1366
BstMBI GATC 6 cut(s) 100, 472, 1072, 1311, 1456, 1614
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 4 cut(s) 230, 494, 981, 1213
BstSCI CCNGG 1 cut(s) 163
BstV2I GAAGAC 2 cut(s) 1085, 1212
BstX2I RGATCY 2 cut(s) 1072, 1614
BstXI CCANNNNNNTGG 1 cut(s) 634
BstYI RGATCY 2 cut(s) 1072, 1614
Bsu36I CCTNAGG 1 cut(s) 909
BsuI GTATCC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 1292
BtgI CCRYGG 1 cut(s) 1293
BtsCI GGATG 2 cut(s) 82, 700
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 299, 462
CciI TCATGA 4 cut(s) 10, 208, 511, 658
CseI GACGC 1 cut(s) 507
Csp6I GTAC 4 cut(s) 224, 560, 683, 1156
CviQI GTAC 4 cut(s) 224, 560, 683, 1156
DdeI CTNAG 8 cut(s) 54, 347, 533, 780, 909, 1095, 1305, 1475
DpnI GATC 6 cut(s) 102, 474, 1074, 1313, 1458, 1616
DpnII GATC 6 cut(s) 100, 472, 1072, 1311, 1456, 1614
Eam1104I CTCTTC 3 cut(s) 657, 717, 810
EarI CTCTTC 3 cut(s) 657, 717, 810
Ecl136II GAGCTC 1 cut(s) 801
Eco130I CCWWGG 2 cut(s) 187, 1293
Eco24I GRGCYC 1 cut(s) 803
Eco32I GATATC 1 cut(s) 1564
Eco53kI GAGCTC 1 cut(s) 801
Eco57I CTGAAG 2 cut(s) 1224, 1437
Eco81I CCTNAGG 1 cut(s) 909
EcoICRI GAGCTC 1 cut(s) 801
EcoRI GAATTC 3 cut(s) 543, 737, 1130
EcoRII CCWGG 1 cut(s) 163
EcoRV GATATC 1 cut(s) 1564
EcoT14I CCWWGG 2 cut(s) 187, 1293
EcoT22I ATGCAT 2 cut(s) 796, 1215
EcoT38I GRGCYC 1 cut(s) 803
ErhI CCWWGG 2 cut(s) 187, 1293
FauI CCCGC 1 cut(s) 1604
FauNDI CATATG 1 cut(s) 42
FbaI TGATCA 1 cut(s) 1456
FokI GGATG 2 cut(s) 89, 707
FriOI GRGCYC 1 cut(s) 803
FspBI CTAG 2 cut(s) 734, 1392
HaeIII GGCC 1 cut(s) 1292
HgaI GACGC 1 cut(s) 507
HincII GTYRAC 1 cut(s) 1300
HindII GTYRAC 1 cut(s) 1300
HindIII AAGCTT 2 cut(s) 413, 1461
HinfI GANTC 6 cut(s) 277, 655, 988, 1097, 1356, 1421
HpaI GTTAAC 1 cut(s) 1300
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 1300
Hpy188I TCNGA 8 cut(s) 195, 282, 1077, 1365, 1430, 1555, 1621, 1647
Hpy8I GTNNAC 1 cut(s) 1300
Hpy99I CGWCG 1 cut(s) 501
HpyCH4III ACNGT 3 cut(s) 687, 1183, 1494
HpyCH4IV ACGT 1 cut(s) 758
HpyCH4V TGCA 6 cut(s) 377, 484, 642, 794, 953, 1213
HpyF3I CTNAG 8 cut(s) 54, 347, 533, 780, 909, 1095, 1305, 1475
HpySE526I ACGT 1 cut(s) 758
Ksp22I TGATCA 1 cut(s) 1456
KspAI GTTAAC 1 cut(s) 1300
Kzo9I GATC 6 cut(s) 100, 472, 1072, 1311, 1456, 1614
LguI GCTCTTC 1 cut(s) 657
LmnI GCTCC 1 cut(s) 851
LpnPI CCDG 6 cut(s) 150, 177, 283, 334, 715, 747
LweI GCATC 1 cut(s) 447
MaeI CTAG 2 cut(s) 734, 1392
MaeII ACGT 1 cut(s) 758
MaeIII GTNAC 4 cut(s) 536, 595, 969, 1402
MalI GATC 6 cut(s) 102, 474, 1074, 1313, 1458, 1616
MboI GATC 6 cut(s) 100, 472, 1072, 1311, 1456, 1614
MfeI CAATTG 2 cut(s) 285, 591
MflI RGATCY 2 cut(s) 1072, 1614
MhlI GDGCHC 1 cut(s) 803
MlyI GAGTC 4 cut(s) 664, 997, 1106, 1365
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 6 cut(s) 73, 189, 824, 882, 1279, 1282
Mph1103I ATGCAT 2 cut(s) 796, 1215
MroXI GAANNNNTTC 1 cut(s) 1494
MseI TTAA 9 cut(s) 138, 201, 861, 960, 1005, 1046, 1299, 1434, 1626
MslI CAYNNNNRTG 3 cut(s) 632, 876, 976
MspA1I CMGCKG 1 cut(s) 1415
MspCI CTTAAG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 165
MunI CAATTG 2 cut(s) 285, 591
Mva1269I GAATGC 3 cut(s) 10, 501, 914
MvaI CCWGG 1 cut(s) 165
NcoI CCATGG 1 cut(s) 1293
NdeI CATATG 1 cut(s) 42
NdeII GATC 6 cut(s) 100, 472, 1072, 1311, 1456, 1614
NmuCI GTSAC 3 cut(s) 536, 969, 1402
NsiI ATGCAT 2 cut(s) 796, 1215
NspI RCATGY 4 cut(s) 230, 494, 981, 1213
OliI CACNNNNGTG 1 cut(s) 876
PagI TCATGA 4 cut(s) 10, 208, 511, 658
PciI ACATGT 1 cut(s) 977
PciSI GCTCTTC 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 1351
PctI GAATGC 3 cut(s) 10, 501, 914
PdmI GAANNNNTTC 1 cut(s) 1494
PfeI GAWTC 2 cut(s) 277, 1421
PleI GAGTC 4 cut(s) 663, 996, 1105, 1364
PpsI GAGTC 4 cut(s) 663, 996, 1105, 1364
PscI ACATGT 1 cut(s) 977
PshBI ATTAAT 1 cut(s) 1626
Psp124BI GAGCTC 1 cut(s) 803
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PsuI RGATCY 2 cut(s) 1072, 1614
PvuII CAGCTG 1 cut(s) 1415
RsaI GTAC 4 cut(s) 225, 561, 684, 1157
RsaNI GTAC 4 cut(s) 224, 560, 683, 1156
RseI CAYNNNNRTG 3 cut(s) 632, 876, 976
SacI GAGCTC 1 cut(s) 803
SapI GCTCTTC 1 cut(s) 657
SaqAI TTAA 9 cut(s) 138, 201, 861, 960, 1005, 1046, 1299, 1434, 1626
Sau3AI GATC 6 cut(s) 100, 472, 1072, 1311, 1456, 1614
SchI GAGTC 4 cut(s) 664, 997, 1106, 1365
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 1 cut(s) 803
SfaNI GCATC 1 cut(s) 447
SmiMI CAYNNNNRTG 3 cut(s) 632, 876, 976
SmlI CTYRAG 2 cut(s) 200, 1259
SmoI CTYRAG 2 cut(s) 200, 1259
SsiI CCGC 1 cut(s) 1611
SspI AATATT 3 cut(s) 859, 1017, 1110
SspMI CTAG 2 cut(s) 734, 1392
SstI GAGCTC 1 cut(s) 803
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 2 cut(s) 187, 1293
TaaI ACNGT 3 cut(s) 687, 1183, 1494
TaiI ACGT 1 cut(s) 761
TaqI TCGA 2 cut(s) 496, 1530
TatI WGTACW 1 cut(s) 223
TfiI GAWTC 2 cut(s) 277, 1421
Tru1I TTAA 9 cut(s) 138, 201, 861, 960, 1005, 1046, 1299, 1434, 1626
Tru9I TTAA 9 cut(s) 138, 201, 861, 960, 1005, 1046, 1299, 1434, 1626
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 3 cut(s) 536, 969, 1402
Tsp45I GTSAC 3 cut(s) 536, 969, 1402
TspDTI ATGAA 8 cut(s) 17, 75, 132, 225, 567, 675, 1335, 1521
TspGWI ACGGA 1 cut(s) 954
TspRI CASTG 1 cut(s) 58
Vha464I CTTAAG 1 cut(s) 200
VspI ATTAAT 1 cut(s) 1626
XapI RAATTY 8 cut(s) 435, 467, 543, 737, 1130, 1191, 1264, 1594
XceI RCATGY 4 cut(s) 230, 494, 981, 1213
XmnI GAANNNNTTC 1 cut(s) 1494
XspI CTAG 2 cut(s) 734, 1392
Zsp2I ATGCAT 2 cut(s) 796, 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.