Rorug05G0251300

Domain of unknown function (DUF4371)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
27544033 .. 27549171
5139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0251300.1

Sequence Viewer

Length: 1839 bp
ATGGTCACCAAGCTCTTCCTCCTCAGACCTCACTCTCTTCCCCTCTTCACTCTCCCCTCTAAATTCCTCTTCCCCAAACTACCCTCGCTCCCCAAAAGATTCCCCATCCTCTCCCTCTCCTTCTCCACCACCTCCACCCACCCCCAATTTCCAGACCCAGACCTCTCCTATGGACCCTCCCTCCACAAGGGCACCAAGCCCCCAACCCCCATTTCCCACTTCGCAGACCAGCCAATCGAACAAGACGAGGAGGAAAACCTAATCGACGAAGAAAGCTTCAGTAGGGTTTTCAACATCGCCGCCCTCCGAGTCCCCGCAAAAGACTGTTTTGCCCTCGAGAGCCGCCTCCGGGGACACCTGCTGAACTGGCCTCGCGTCCGCAACATCGGCCGAGTCCCCGGCGACGAAGTCGAAGACGACCTCGCCGAGCTCCTCGCTAATAATAGAAATCAAAGCAACGAAGAGGAAGACCAAAGCAGCGGCGTCGTTTCGCTGAACCGCCGCGTGTACGGGAAATCCGACGGCGACGGCGAGCCGCTGAGTGCGGTGCTGTACAGAGAGAAGCTGGCGAAGACGTTCGATTCGCGCGGGTATGTGAATTTTCGGAACCTGGCGAAGATGTCGAGGCCGAACCAGAAGAAGAGGAGGGTTACGGAGGAAGATAACGGCGGTGAAGGGAGGAAGAGGAACCGGAAGGGTGAGTTTTCGGTGCTGGGGGTTGTGGAGGATGAAGAAGAAGAGGGAGAGGACTTGAAGGGTTTGCTGGGGGATGAGTTTCAGGGGAGGAAGAGTTGGAGGGGTTCGACGCGGTTGTTGCTCTTGGATGAACGGTATGGGGATAAAGGCGTGGAGGAGTTGCCTCAGGCAATCCAGGCTGTGATGAAGGAAAATACCTCGAAAAGCATGGGGCCTGCTATTGAGCTTGTGAGATGCAGACTGACTCTTTTGTATGATTACTGGCAGATGAATGAGATATTGGAGGCTTTGCTCCCCGAAGGTATGATTGTTCCTTCGGCCTTTGAAACAGTCGGCCATATTGCACACCTAAACCTGAGAGATGAACATTTACCTTACAGAAAGTTTATAGCTAAGGTGATTCTTGATAAAAATAAGCCAAAGATTCAGACAGTTGTAAATAAAATCGATGCCATTCAAAATGACTATAGAACAATGCAGCTTGAAGTTTTAGCTGGGAATCATTCGCTTGTGACAAAAGTAGTTGAGAATGGTTTGCGATTTCAGGTTGACCTAGCAACAGTGTACTGGAATTCCAGACTTGCGACAGAAAGACAAAGGCTATTGAACAGCTTTACCCGCAATGATGTTGTGTGTGATGTTTTCTCTGGAGTTGGTCCAATAGCTATCTCTGCAGCAAAGATTGTAAAACGAGTTTATGCCAATGATTTGAATCCCCACGCTGTTGAATATCTGCAAAGAAATAGTGGCATCAACAAACTCGATAGGAAGATTAAGGTCTTTAATATGGATGGAAGGAGGTTCATTAGCGCCATGTTTGCAAGTGATAAAGCTAAATCCATTACACAAGTGGTGATGAATTTGCCAAAGGACGCTGCAGAGTATCTAGATGCATTTCGGGGAATTTTAAGAGATAGATCCAAGGATGAAGAATTTAGCTTGCCAATGATCCATGTTTATGGATTCTCCAAAGCTGAAGATCCGGAGTTTGACTTCCATCAGAGAATAAGAATCGCACTGTCAGAAGTGGCAGTTGATGTAGAAATGCGTAGGGTTCGCCTTGTTGCACCAGGGAAATGGATGTTGTGTGCATCATTTATCCTCCCAAAGAGTGTAGCTTTTTCAAAACCAGTGGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

612

Amino Acids

69.55

Weight (kDa)

8.12

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TYW2_N_2 PF25133 322 - 400 1.9e-20 TYW2 N-terminal domain
TRM5-TYW2_MTfase PF02475 404 - 539 2e-30 TRM5/TYW2 methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 366
Acc36I ACCTGC 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 191
AccII CGCG 5 cut(s) 375, 504, 586, 588, 808
AccIII TCCGGA 1 cut(s) 1678
AclWI GGATC 3 cut(s) 1608, 1639, 1670
AcoI YGGCCR 2 cut(s) 388, 1030
AcsI RAATTY 6 cut(s) 62, 598, 1267, 1555, 1599, 1628
AcuI CTGAAG 2 cut(s) 262, 1692
AcyI GRCGYC 1 cut(s) 483
AfaI GTAC 3 cut(s) 509, 554, 1262
AfiI CCNNNNNNNGG 2 cut(s) 187, 349
AgsI TTSAA 9 cut(s) 292, 754, 1022, 1154, 1181, 1303, 1408, 1424, 1821
AjnI CCWGG 3 cut(s) 609, 870, 1765
AjuI GAANNNNNNNTTGG 4 cut(s) 196, 228, 959, 991
Alw21I GWGCWC 1 cut(s) 432
AlwI GGATC 3 cut(s) 1608, 1639, 1670
Ama87I CYCGRG 1 cut(s) 335
Aor13HI TCCGGA 1 cut(s) 1678
AoxI GGCC 6 cut(s) 368, 388, 626, 908, 1014, 1030
ApeKI GCWGC 4 cut(s) 477, 1174, 1370, 1571
ApoI RAATTY 6 cut(s) 62, 598, 1267, 1555, 1599, 1628
ArsI GACNNNNNNTTYG 2 cut(s) 565, 597
Asp700I GAANNNNTTC 1 cut(s) 575
AspLEI GCGC 2 cut(s) 588, 1508
AspS9I GGNCC 3 cut(s) 173, 908, 1352
AsuC2I CCSGG 2 cut(s) 350, 399
AsuHPI GGTGA 4 cut(s) 683, 710, 1105, 1561
AvaI CYCGRG 1 cut(s) 335
AvaII GGWCC 2 cut(s) 173, 1352
AxyI CCTNAGG 1 cut(s) 861
BaeGI GKGCMC 1 cut(s) 194
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 432
BbsI GAAGAC 3 cut(s) 420, 474, 578
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 4 cut(s) 489, 1186, 1382, 1558
BccI CCATC 3 cut(s) 113, 1481, 1701
BceAI ACGGC 3 cut(s) 538, 544, 682
BcgI CGANNNNNNTGC 2 cut(s) 466, 500
BciT130I CCWGG 3 cut(s) 611, 872, 1767
BcnI CCSGG 2 cut(s) 350, 399
BfaI CTAG 2 cut(s) 1250, 1583
BfmI CTRYAG 3 cut(s) 1162, 1368, 1572
BfoI RGCGCY 1 cut(s) 1509
BfuAI ACCTGC 1 cut(s) 366
BisI GCNGC 9 cut(s) 300, 343, 478, 481, 502, 536, 1175, 1371, 1572
BlsI GCNGC 9 cut(s) 301, 344, 479, 482, 503, 537, 1176, 1372, 1573
Bme1390I CCNGG 5 cut(s) 350, 399, 611, 872, 1767
Bme18I GGWCC 2 cut(s) 173, 1352
BmeT110I CYCGRG 1 cut(s) 335
BmgT120I GGNCC 3 cut(s) 173, 908, 1352
BmiI GGNNCC 5 cut(s) 175, 193, 608, 689, 909
BmrFI CCNGG 5 cut(s) 350, 399, 611, 872, 1767
BmsI GCATC 5 cut(s) 920, 1135, 1455, 1576, 1796
BpiI GAAGAC 3 cut(s) 420, 474, 578
BpmI CTGGAG 1 cut(s) 1365
Bpu10I CCTNAGC 1 cut(s) 1089
BpuMI CCSGG 2 cut(s) 350, 399
Bsa29I ATCGAT 1 cut(s) 1143
BsaBI GATNNNNATC 1 cut(s) 1407
BsaHI GRCGYC 1 cut(s) 483
BsaJI CCNNGG 4 cut(s) 349, 397, 1617, 1766
BsaWI WCCGGW 2 cut(s) 690, 1678
BsaXI ACNNNNNCTCC 6 cut(s) 72, 102, 165, 195, 775, 805
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 349
Bse1I ACTGG 4 cut(s) 371, 962, 1268, 1826
Bse21I CCTNAGG 1 cut(s) 861
Bse3DI GCAATG 1 cut(s) 1324
Bse8I GATNNNNATC 1 cut(s) 1407
BseAI TCCGGA 1 cut(s) 1678
BseBI CCWGG 3 cut(s) 611, 872, 1767
BseCI ATCGAT 1 cut(s) 1143
BseDI CCNNGG 4 cut(s) 349, 397, 1617, 1766
BseGI GGATG 7 cut(s) 105, 733, 775, 829, 1492, 1627, 1782
BseJI GATNNNNATC 1 cut(s) 1407
BseLI CCNNNNNNNGG 2 cut(s) 187, 349
BseMI GCAATG 1 cut(s) 1324
BseMII CTCAG 4 cut(s) 37, 530, 875, 1043
BseNI ACTGG 4 cut(s) 371, 962, 1268, 1826
BseRI GAGGAG 5 cut(s) 11, 263, 422, 658, 866
BseSI GKGCMC 1 cut(s) 194
BseX3I CGGCCG 1 cut(s) 388
BseXI GCAGC 4 cut(s) 489, 1186, 1382, 1558
BseYI CCCAGC 3 cut(s) 712, 763, 1190
Bsh1236I CGCG 5 cut(s) 375, 504, 586, 588, 808
Bsh1285I CGRYCG 1 cut(s) 391
BshFI GGCC 6 cut(s) 370, 390, 628, 910, 1016, 1032
BshNI GGYRCC 1 cut(s) 191
BshVI ATCGAT 1 cut(s) 1143
BsiEI CGRYCG 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 432
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 4 cut(s) 349, 399, 691, 1679
BslFI GGGAC 3 cut(s) 296, 366, 380
BslI CCNNNNNNNGG 2 cut(s) 187, 349
BsmFI GGGAC 3 cut(s) 296, 366, 380
BsnI GGCC 6 cut(s) 370, 390, 628, 910, 1016, 1032
BsoBI CYCGRG 1 cut(s) 335
Bsp1286I GDGCHC 2 cut(s) 194, 432
Bsp13I TCCGGA 1 cut(s) 1678
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 3 cut(s) 1613, 1644, 1675
BspANI GGCC 6 cut(s) 370, 390, 628, 910, 1016, 1032
BspCNI CTCAG 4 cut(s) 36, 531, 874, 1044
BspDI ATCGAT 1 cut(s) 1143
BspEI TCCGGA 1 cut(s) 1678
BspFNI CGCG 5 cut(s) 375, 504, 586, 588, 808
BspLI GGNNCC 5 cut(s) 175, 193, 608, 689, 909
BspMAI CTGCAG 2 cut(s) 1372, 1576
BspMI ACCTGC 1 cut(s) 366
BspPI GGATC 3 cut(s) 1608, 1639, 1670
BspQI GCTCTTC 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 1324
BsrGI TGTACA 1 cut(s) 552
BsrI ACTGG 4 cut(s) 371, 962, 1268, 1826
BssECI CCNNGG 4 cut(s) 349, 397, 1617, 1766
BssMI GATC 3 cut(s) 1613, 1644, 1675
BssNI GRCGYC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 1617
Bst2UI CCWGG 3 cut(s) 611, 872, 1767
Bst4CI ACNGT 6 cut(s) 326, 831, 1027, 1129, 1258, 1716
Bst6I CTCTTC 9 cut(s) 20, 42, 50, 74, 456, 635, 677, 732, 782
BstACI GRCGYC 1 cut(s) 483
BstAUI TGTACA 1 cut(s) 552
BstC8I GCNNGC 4 cut(s) 533, 567, 912, 1637
BstDEI CTNAG 5 cut(s) 23, 539, 861, 1052, 1089
BstEII GGTNACC 1 cut(s) 4
BstENI CCTNNNNNAGG 1 cut(s) 185
BstF5I GGATG 7 cut(s) 105, 733, 775, 829, 1492, 1627, 1782
BstFNI CGCG 5 cut(s) 375, 504, 586, 588, 808
BstH2I RGCGCY 1 cut(s) 1509
BstHHI GCGC 2 cut(s) 588, 1508
BstKTI GATC 3 cut(s) 1616, 1647, 1678
BstMBI GATC 3 cut(s) 1613, 1644, 1675
BstMCI CGRYCG 1 cut(s) 391
BstMWI GCNNNNNNNGC 7 cut(s) 367, 387, 814, 872, 1314, 1367, 1514
BstNI CCWGG 3 cut(s) 611, 872, 1767
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 5 cut(s) 348, 397, 609, 870, 1765
BstSFI CTRYAG 3 cut(s) 1162, 1368, 1572
BstSLI GKGCMC 1 cut(s) 194
BstUI CGCG 5 cut(s) 375, 504, 586, 588, 808
BstV1I GCAGC 4 cut(s) 489, 1186, 1382, 1558
BstV2I GAAGAC 3 cut(s) 420, 474, 578
BstX2I RGATCY 2 cut(s) 1613, 1675
BstXI CCANNNNNNTGG 2 cut(s) 1655, 1773
BstYI RGATCY 2 cut(s) 1613, 1675
BstZI CGGCCG 1 cut(s) 388
Bsu15I ATCGAT 1 cut(s) 1143
Bsu36I CCTNAGG 1 cut(s) 861
BsuRI GGCC 6 cut(s) 370, 390, 628, 910, 1016, 1032
BsuTUI ATCGAT 1 cut(s) 1143
BtgZI GCGATG 1 cut(s) 280
BtsCI GGATG 7 cut(s) 105, 733, 775, 829, 1492, 1627, 1782
BtsIMutI CAGTG 3 cut(s) 1263, 1712, 1833
BveI ACCTGC 1 cut(s) 366
Cac8I GCNNGC 4 cut(s) 533, 567, 912, 1637
CfoI GCGC 2 cut(s) 588, 1508
Cfr13I GGNCC 3 cut(s) 173, 908, 1352
ClaI ATCGAT 1 cut(s) 1143
CseI GACGC 4 cut(s) 364, 472, 814, 1577
Csp6I GTAC 3 cut(s) 508, 553, 1261
CspCI CAANNNNNGTGG 1 cut(s) 1809
CviAII CATG 3 cut(s) 904, 1510, 1649
CviQI GTAC 3 cut(s) 508, 553, 1261
DdeI CTNAG 5 cut(s) 23, 539, 861, 1052, 1089
DpnI GATC 3 cut(s) 1615, 1646, 1677
DpnII GATC 3 cut(s) 1613, 1644, 1675
EaeI YGGCCR 2 cut(s) 388, 1030
EagI CGGCCG 1 cut(s) 388
Eam1104I CTCTTC 9 cut(s) 20, 42, 50, 74, 456, 635, 677, 732, 782
EarI CTCTTC 9 cut(s) 20, 42, 50, 74, 456, 635, 677, 732, 782
Ecl136II GAGCTC 1 cut(s) 430
EclXI CGGCCG 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 1617
Eco24I GRGCYC 1 cut(s) 432
Eco47I GGWCC 2 cut(s) 173, 1352
Eco52I CGGCCG 1 cut(s) 388
Eco53kI GAGCTC 1 cut(s) 430
Eco57I CTGAAG 2 cut(s) 262, 1692
Eco81I CCTNAGG 1 cut(s) 861
Eco88I CYCGRG 1 cut(s) 335
Eco91I GGTNACC 1 cut(s) 4
EcoICRI GAGCTC 1 cut(s) 430
EcoNI CCTNNNNNAGG 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 908
EcoO65I GGTNACC 1 cut(s) 4
EcoRI GAATTC 1 cut(s) 1267
EcoRII CCWGG 3 cut(s) 609, 870, 1765
EcoT14I CCWWGG 1 cut(s) 1617
EcoT22I ATGCAT 1 cut(s) 1591
EcoT38I GRGCYC 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 1617
FaeI CATG 3 cut(s) 907, 1513, 1652
FaqI GGGAC 3 cut(s) 296, 366, 380
FatI CATG 3 cut(s) 903, 1509, 1648
FauI CCCGC 3 cut(s) 322, 581, 1322
Fnu4HI GCNGC 9 cut(s) 300, 343, 478, 481, 502, 536, 1175, 1371, 1572
FokI GGATG 7 cut(s) 92, 740, 782, 836, 1499, 1634, 1789
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 9 cut(s) 300, 343, 478, 481, 502, 536, 1175, 1371, 1572
FspBI CTAG 2 cut(s) 1250, 1583
GlaI GCGC 2 cut(s) 587, 1507
GluI GCNGC 9 cut(s) 300, 343, 478, 481, 502, 536, 1175, 1371, 1572
GsaI CCCAGC 3 cut(s) 716, 767, 1194
GsuI CTGGAG 1 cut(s) 1365
HaeII RGCGCY 1 cut(s) 1509
HaeIII GGCC 6 cut(s) 370, 390, 628, 910, 1016, 1032
HapII CCGG 4 cut(s) 349, 399, 691, 1679
HgaI GACGC 4 cut(s) 364, 472, 814, 1577
HhaI GCGC 2 cut(s) 588, 1508
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 3 cut(s) 907, 1513, 1652
Hin6I GCGC 2 cut(s) 586, 1506
HinP1I GCGC 2 cut(s) 586, 1506
HincII GTYRAC 1 cut(s) 1246
HindII GTYRAC 1 cut(s) 1246
HindIII AAGCTT 1 cut(s) 274
HpaII CCGG 4 cut(s) 349, 399, 691, 1679
HphI GGTGA 4 cut(s) 683, 710, 1105, 1561
Hpy166II GTNNAC 3 cut(s) 508, 1246, 1261
Hpy188I TCNGA 7 cut(s) 26, 308, 520, 606, 1125, 1698, 1720
Hpy188III TCNNGA 7 cut(s) 152, 337, 1100, 1272, 1344, 1583, 1679
Hpy8I GTNNAC 3 cut(s) 508, 1246, 1261
Hpy99I CGWCG 6 cut(s) 269, 407, 488, 524, 530, 808
HpyAV CCTTC 8 cut(s) 130, 668, 688, 748, 877, 989, 1020, 1485
HpyCH4III ACNGT 6 cut(s) 326, 831, 1027, 1129, 1258, 1716
HpyCH4IV ACGT 1 cut(s) 575
HpyF10VI GCNNNNNNNGC 7 cut(s) 367, 387, 814, 872, 1314, 1367, 1514
HpyF3I CTNAG 5 cut(s) 23, 539, 861, 1052, 1089
HpySE526I ACGT 1 cut(s) 575
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 3 cut(s) 907, 1513, 1652
HspAI GCGC 2 cut(s) 586, 1506
Kpn2I TCCGGA 1 cut(s) 1678
Kzo9I GATC 3 cut(s) 1613, 1644, 1675
LguI GCTCTTC 1 cut(s) 20
LmnI GCTCC 3 cut(s) 93, 435, 993
Lsp1109I GCAGC 4 cut(s) 489, 1186, 1382, 1558
LweI GCATC 5 cut(s) 920, 1135, 1455, 1576, 1796
MaeI CTAG 2 cut(s) 1250, 1583
MaeII ACGT 1 cut(s) 575
MaeIII GTNAC 3 cut(s) 4, 649, 1207
MalI GATC 3 cut(s) 1615, 1646, 1677
MboI GATC 3 cut(s) 1613, 1644, 1675
MflI RGATCY 2 cut(s) 1613, 1675
MhlI GDGCHC 2 cut(s) 194, 432
MluCI AATT 7 cut(s) 62, 146, 598, 1267, 1555, 1599, 1628
MlyI GAGTC 3 cut(s) 318, 402, 934
MmeI TCCRAC 2 cut(s) 543, 773
Mph1103I ATGCAT 1 cut(s) 1591
MroI TCCGGA 1 cut(s) 1678
MroXI GAANNNNTTC 1 cut(s) 575
MseI TTAA 3 cut(s) 1470, 1479, 1604
MslI CAYNNNNRTG 1 cut(s) 1653
MspA1I CMGCKG 2 cut(s) 480, 538
MspI CCGG 4 cut(s) 349, 399, 691, 1679
MspR9I CCNGG 5 cut(s) 350, 399, 611, 872, 1767
MvaI CCWGG 3 cut(s) 611, 872, 1767
MvnI CGCG 5 cut(s) 375, 504, 586, 588, 808
MwoI GCNNNNNNNGC 7 cut(s) 367, 387, 814, 872, 1314, 1367, 1514
NciI CCSGG 2 cut(s) 350, 399
NdeII GATC 3 cut(s) 1613, 1644, 1675
NlaIII CATG 3 cut(s) 907, 1513, 1652
NlaIV GGNNCC 5 cut(s) 175, 193, 608, 689, 909
NmeAIII GCCGAG 2 cut(s) 416, 451
NmuCI GTSAC 2 cut(s) 4, 1207
NsiI ATGCAT 1 cut(s) 1591
PaeR7I CTCGAG 1 cut(s) 335
PaqCI CACCTGC 1 cut(s) 366
PciSI GCTCTTC 1 cut(s) 20
PcsI WCGNNNNNNNCGW 4 cut(s) 243, 423, 516, 528
PdmI GAANNNNTTC 1 cut(s) 575
PfeI GAWTC 8 cut(s) 99, 581, 1096, 1120, 1195, 1408, 1659, 1707
PflFI GACNNNGTC 1 cut(s) 407
PkrI GCNGC 9 cut(s) 301, 344, 479, 482, 503, 537, 1176, 1372, 1573
PleI GAGTC 3 cut(s) 317, 401, 934
PpsI GAGTC 3 cut(s) 317, 401, 934
Psp124BI GAGCTC 1 cut(s) 432
Psp6I CCWGG 3 cut(s) 609, 870, 1765
PspEI GGTNACC 1 cut(s) 4
PspFI CCCAGC 3 cut(s) 712, 763, 1190
PspGI CCWGG 3 cut(s) 609, 870, 1765
PspN4I GGNNCC 5 cut(s) 175, 193, 608, 689, 909
PspPI GGNCC 3 cut(s) 173, 908, 1352
PstI CTGCAG 2 cut(s) 1372, 1576
PsuI RGATCY 2 cut(s) 1613, 1675
PsyI GACNNNGTC 1 cut(s) 407
RsaI GTAC 3 cut(s) 509, 554, 1262
RsaNI GTAC 3 cut(s) 508, 553, 1261
RseI CAYNNNNRTG 1 cut(s) 1653
SacI GAGCTC 1 cut(s) 432
SapI GCTCTTC 1 cut(s) 20
SaqAI TTAA 3 cut(s) 1470, 1479, 1604
SatI GCNGC 9 cut(s) 300, 343, 478, 481, 502, 536, 1175, 1371, 1572
Sau3AI GATC 3 cut(s) 1613, 1644, 1675
Sau96I GGNCC 3 cut(s) 173, 908, 1352
SchI GAGTC 3 cut(s) 318, 402, 934
ScrFI CCNGG 5 cut(s) 350, 399, 611, 872, 1767
SduI GDGCHC 2 cut(s) 194, 432
SfaNI GCATC 5 cut(s) 920, 1135, 1455, 1576, 1796
SfcI CTRYAG 3 cut(s) 1162, 1368, 1572
Sfr274I CTCGAG 1 cut(s) 335
SinI GGWCC 2 cut(s) 173, 1352
SlaI CTCGAG 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 1653
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 7 cut(s) 62, 146, 598, 1267, 1555, 1599, 1628
SspMI CTAG 2 cut(s) 1250, 1583
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 5 cut(s) 348, 397, 609, 870, 1765
StyI CCWWGG 1 cut(s) 1617
TaaI ACNGT 6 cut(s) 326, 831, 1027, 1129, 1258, 1716
TaiI ACGT 1 cut(s) 578
TasI AATT 7 cut(s) 62, 146, 598, 1267, 1555, 1599, 1628
TatI WGTACW 2 cut(s) 552, 1260
TauI GCSGC 5 cut(s) 302, 345, 483, 504, 538
TfiI GAWTC 8 cut(s) 99, 581, 1096, 1120, 1195, 1408, 1659, 1707
Tru1I TTAA 3 cut(s) 1470, 1479, 1604
Tru9I TTAA 3 cut(s) 1470, 1479, 1604
TscAI CASTG 3 cut(s) 1263, 1719, 1833
TseFI GTSAC 2 cut(s) 4, 1207
TseI GCWGC 4 cut(s) 477, 1174, 1370, 1571
Tsp45I GTSAC 2 cut(s) 4, 1207
TspDTI ATGAA 8 cut(s) 744, 840, 896, 980, 1074, 1489, 1568, 1638
TspGWI ACGGA 1 cut(s) 668
TspRI CASTG 3 cut(s) 1263, 1719, 1833
Tth111I GACNNNGTC 1 cut(s) 407
VpaK11BI GGWCC 2 cut(s) 173, 1352
XagI CCTNNNNNAGG 1 cut(s) 185
XapI RAATTY 6 cut(s) 62, 598, 1267, 1555, 1599, 1628
XbaI TCTAGA 1 cut(s) 1582
XcmI CCANNNNNNNNNTGG 1 cut(s) 1543
XhoI CTCGAG 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 575
XspI CTAG 2 cut(s) 1250, 1583
Zsp2I ATGCAT 1 cut(s) 1591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.