Rmu_sc0002804.1_g000009

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002804.1
OG0000215
Physical Location & Seq
Forward (+)
31882 .. 33189
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002804.1_g000009.1.cds

Sequence Viewer

Length: 1308 bp
atggctcctactagaaaatttcaatctggccacgagaaacgagtgaaaaagagaaaagccgaacaatttttggaatcccaaagaggagcactagatagatttattgttaaacaatctcagaatcaaggaagtgcagatatagtgaataaagaacaaactgatgttgttgaggaagtagatgataccgatatcaatgttgaagaagatgtagatgatcttggccatagtgatagtgatcacaacgaaatttttgatgatgaagaatttgatagtgatgggtatgaagatgaggttgatactaatttagtgaatgaagaatcaagtcaacgcatccctgtagacatttttgatccaagaaattgggaaactcttgataccaagtggagagatcttttagtggaaaaaggtcctgtcagggacctgttaacagggaaaggtcctaaagatcaattaagtaggcgtttcaattcaaattgttatattcgctatttagcgaatggagaaaatcatgatagagaatggcaactgtactcaaaggagcttgataaagtgttctgcttttgttgtaaattattcaaaactaggcctcaacatactcaattggcaaacgagggatctaaagattgggcacatttgagtactaagctgaaagatcatgaggcaagtgttgagcatgtcactcatatgagcatttggattgatttacgaattagactgaaaaacaataaaactattgataaggttgttcaagaacgggtcaagaaagagaaagaacactggagaaatttattgcgaagattgatttcaattgtgaaatatcttgcaaagcagaatttggcatttcgtggaacaaaagagaagatttatgaagagagtaatggaaattttatgggccaagttgaaatgattgcagagtgggatttattgatgaaggaacatcttcgacgaagggaacaaaatgagatacattatcactatcttagtcataagatccaaaatgagttgataagtttgatagcttctgaaatcaaaagtgtcatcattaagaaaattaaggaagctaaatatttttctgtgatacttgattgtactccagatgttagccatcaagaacaaatgaccttgataataagatgtgtgaatgtctctgcgattccggttaaaatagaagagtactttttggaatttatgaacgtgcatgatacaactggacaaggactttttgaaaagttgcaagatgtgttaaaaagtcttgatcttgatatcgacaatgtagagggcaaggatatgacaatagatcaaatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

435

Amino Acids

51.11

Weight (kDa)

5.44

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 339
AclWI GGATC 3 cut(s) 344, 622, 985
AcoI YGGCCR 2 cut(s) 28, 220
AcsI RAATTY 7 cut(s) 17, 246, 263, 784, 832, 883, 1184
AfaI GTAC 4 cut(s) 530, 640, 1090, 1175
AgsI TTSAA 9 cut(s) 23, 200, 466, 471, 577, 749, 807, 902, 1226
AluBI AGCT 4 cut(s) 541, 646, 1019, 1061
AluI AGCT 4 cut(s) 541, 646, 1019, 1061
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 1150
AlwI GGATC 3 cut(s) 344, 622, 985
AoxI GGCC 4 cut(s) 28, 220, 584, 892
ApoI RAATTY 7 cut(s) 17, 246, 263, 784, 832, 883, 1184
Asp700I GAANNNNTTC 1 cut(s) 939
AspS9I GGNCC 4 cut(s) 407, 418, 437, 892
AvaII GGWCC 3 cut(s) 407, 418, 437
BaeGI GKGCMC 1 cut(s) 631
BalI TGGCCA 2 cut(s) 30, 222
BauI CACGAG 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 2 cut(s) 269, 1113
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 1150
BfaI CTAG 3 cut(s) 12, 92, 582
BfmI CTRYAG 1 cut(s) 336
BglII AGATCT 1 cut(s) 388
BmcAI AGTACT 2 cut(s) 640, 1175
Bme18I GGWCC 3 cut(s) 407, 418, 437
BmgT120I GGNCC 4 cut(s) 407, 418, 437, 892
BmiI GGNNCC 2 cut(s) 6, 419
BmsI GCATC 1 cut(s) 339
BpmI CTGGAG 2 cut(s) 799, 1077
BsaBI GATNNNNATC 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 1156
Bse1I ACTGG 2 cut(s) 782, 1213
Bse8I GATNNNNATC 1 cut(s) 234
BseGI GGATG 1 cut(s) 330
BseJI GATNNNNATC 1 cut(s) 234
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 2 cut(s) 782, 1213
BseRI GAGGAG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 631
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 4 cut(s) 30, 222, 586, 894
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 1157
BslFI GGGAC 1 cut(s) 431
BsmAI GTCTC 1 cut(s) 1150
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 4 cut(s) 30, 222, 586, 894
Bsp1286I GDGCHC 2 cut(s) 91, 631
BspANI GGCC 4 cut(s) 30, 222, 586, 894
BspCNI CTCAG 1 cut(s) 130
BspHI TCATGA 2 cut(s) 508, 655
BspLI GGNNCC 2 cut(s) 6, 419
BspPI GGATC 3 cut(s) 344, 622, 985
BsrI ACTGG 2 cut(s) 782, 1213
BssSI CACGAG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 528
Bst6I CTCTTC 2 cut(s) 864, 1164
BstDEI CTNAG 3 cut(s) 117, 642, 980
BstF5I GGATG 1 cut(s) 330
BstMAI GTCTC 1 cut(s) 1150
BstNSI RCATGY 1 cut(s) 677
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 631
BstX2I RGATCY 3 cut(s) 388, 614, 990
BstXI CCANNNNNNTGG 1 cut(s) 360
BstYI RGATCY 3 cut(s) 388, 614, 990
BsuRI GGCC 4 cut(s) 30, 222, 586, 894
BtsCI GGATG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 775
CciI TCATGA 2 cut(s) 508, 655
Cfr13I GGNCC 4 cut(s) 407, 418, 437, 892
Csp6I GTAC 4 cut(s) 529, 639, 1089, 1174
CviAII CATG 4 cut(s) 509, 656, 674, 1199
CviQI GTAC 4 cut(s) 529, 639, 1089, 1174
DdeI CTNAG 3 cut(s) 117, 642, 980
EaeI YGGCCR 2 cut(s) 28, 220
Eam1104I CTCTTC 2 cut(s) 864, 1164
EarI CTCTTC 2 cut(s) 864, 1164
Eco147I AGGCCT 1 cut(s) 586
Eco32I GATATC 2 cut(s) 190, 1264
Eco47I GGWCC 3 cut(s) 407, 418, 437
EcoO109I RGGNCCY 3 cut(s) 407, 418, 437
EcoRV GATATC 2 cut(s) 190, 1264
FaeI CATG 4 cut(s) 512, 659, 677, 1202
FaqI GGGAC 1 cut(s) 431
FatI CATG 4 cut(s) 508, 655, 673, 1198
FauNDI CATATG 1 cut(s) 684
FbaI TGATCA 1 cut(s) 235
FblI GTMKAC 1 cut(s) 339
FokI GGATG 1 cut(s) 317
FspBI CTAG 3 cut(s) 12, 92, 582
GsuI CTGGAG 2 cut(s) 799, 1077
HaeIII GGCC 4 cut(s) 30, 222, 586, 894
HapII CCGG 1 cut(s) 1157
Hin1II CATG 4 cut(s) 512, 659, 677, 1202
HincII GTYRAC 2 cut(s) 326, 426
HindII GTYRAC 2 cut(s) 326, 426
HinfI GANTC 4 cut(s) 74, 121, 317, 1153
HpaI GTTAAC 1 cut(s) 426
HpaII CCGG 1 cut(s) 1157
Hpy166II GTNNAC 3 cut(s) 326, 340, 426
Hpy188I TCNGA 2 cut(s) 120, 1024
Hpy188III TCNNGA 9 cut(s) 371, 509, 656, 749, 760, 1094, 1109, 1253, 1259
Hpy8I GTNNAC 3 cut(s) 326, 340, 426
Hpy99I CGWCG 1 cut(s) 948
HpyAV CCTTC 2 cut(s) 925, 942
HpyCH4III ACNGT 1 cut(s) 528
HpyCH4IV ACGT 1 cut(s) 1194
HpyCH4V TGCA 5 cut(s) 134, 824, 911, 1198, 1234
HpyF3I CTNAG 3 cut(s) 117, 642, 980
HpySE526I ACGT 1 cut(s) 1194
Hsp92II CATG 4 cut(s) 512, 659, 677, 1202
Ksp22I TGATCA 1 cut(s) 235
KspAI GTTAAC 1 cut(s) 426
LmnI GCTCC 3 cut(s) 10, 86, 538
LweI GCATC 1 cut(s) 339
MaeI CTAG 3 cut(s) 12, 92, 582
MaeII ACGT 1 cut(s) 1194
MaeIII GTNAC 1 cut(s) 676
MfeI CAATTG 2 cut(s) 599, 807
MflI RGATCY 3 cut(s) 388, 614, 990
MhlI GDGCHC 2 cut(s) 91, 631
MlsI TGGCCA 2 cut(s) 30, 222
MluNI TGGCCA 2 cut(s) 30, 222
MnlI CCTC 7 cut(s) 77, 163, 283, 597, 604, 652, 1270
Mox20I TGGCCA 2 cut(s) 30, 222
MroXI GAANNNNTTC 1 cut(s) 939
MscI TGGCCA 2 cut(s) 30, 222
MseI TTAA 7 cut(s) 108, 425, 452, 1044, 1053, 1161, 1244
MslI CAYNNNNRTG 1 cut(s) 683
Msp20I TGGCCA 2 cut(s) 30, 222
MspI CCGG 1 cut(s) 1157
MunI CAATTG 2 cut(s) 599, 807
NdeI CATATG 1 cut(s) 684
NlaIII CATG 4 cut(s) 512, 659, 677, 1202
NlaIV GGNNCC 2 cut(s) 6, 419
NmuCI GTSAC 1 cut(s) 676
NspI RCATGY 1 cut(s) 677
PagI TCATGA 2 cut(s) 508, 655
PceI AGGCCT 1 cut(s) 586
PdmI GAANNNNTTC 1 cut(s) 939
PfeI GAWTC 4 cut(s) 74, 121, 317, 1153
PpuMI RGGWCCY 3 cut(s) 407, 418, 437
Psp5II RGGWCCY 3 cut(s) 407, 418, 437
PspN4I GGNNCC 2 cut(s) 6, 419
PspPI GGNCC 4 cut(s) 407, 418, 437, 892
PspPPI RGGWCCY 3 cut(s) 407, 418, 437
PsuI RGATCY 3 cut(s) 388, 614, 990
RsaI GTAC 4 cut(s) 530, 640, 1090, 1175
RsaNI GTAC 4 cut(s) 529, 639, 1089, 1174
RseI CAYNNNNRTG 1 cut(s) 683
SaqAI TTAA 7 cut(s) 108, 425, 452, 1044, 1053, 1161, 1244
Sau96I GGNCC 4 cut(s) 407, 418, 437, 892
ScaI AGTACT 2 cut(s) 640, 1175
SduI GDGCHC 2 cut(s) 91, 631
SfaNI GCATC 1 cut(s) 339
SfcI CTRYAG 1 cut(s) 336
SinI GGWCC 3 cut(s) 407, 418, 437
SmiMI CAYNNNNRTG 1 cut(s) 683
SseBI AGGCCT 1 cut(s) 586
SspI AATATT 1 cut(s) 1067
SspMI CTAG 3 cut(s) 12, 92, 582
StuI AGGCCT 1 cut(s) 586
TaaI ACNGT 1 cut(s) 528
TaiI ACGT 1 cut(s) 1197
TaqI TCGA 2 cut(s) 943, 1266
TatI WGTACW 4 cut(s) 528, 638, 1088, 1173
TfiI GAWTC 4 cut(s) 74, 121, 317, 1153
Tru1I TTAA 7 cut(s) 108, 425, 452, 1044, 1053, 1161, 1244
Tru9I TTAA 7 cut(s) 108, 425, 452, 1044, 1053, 1161, 1244
TscAI CASTG 1 cut(s) 782
TseFI GTSAC 1 cut(s) 676
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 6 cut(s) 273, 297, 327, 882, 944, 1205
TspRI CASTG 1 cut(s) 782
VpaK11BI GGWCC 3 cut(s) 407, 418, 437
XapI RAATTY 7 cut(s) 17, 246, 263, 784, 832, 883, 1184
XceI RCATGY 1 cut(s) 677
XmiI GTMKAC 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 939
XspI CTAG 3 cut(s) 12, 92, 582
ZrmI AGTACT 2 cut(s) 640, 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.