Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000761.1

Orthogroup ID

OG0000215

Physical Location & Seq

Genomic Coordinates Forward (+)

95899 .. 96603

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000761.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgaatgctcatgagaatcatggtgaagaagaaagagagcatatgattgacactgagaatgaagatcaactcatggatgaggaagataatgatagtatggatcaagatgtcccaaatgcagatttcaatgagcaaattaactttcctttgaatgttgatgacccaggtaattgggataagattgactacaatatcagagactttttggttgaaagaggtcctcaaagagaccatgattacaattttcccaaagatagtagaggcagacatttttcttcagaacatttctttcgatatttaccaaatggcgagaagcaagatcggaattggctagtgtatttagagtctctagatagaatattttacttttgttgcaagttgtttaagaaggatgagcagaaaattaatttgggcaacatagctagtgtaggatacaaagattggaagaaccttggtcgcaggcttaagggtcatgaaacaagtaatgtgcatgcttattgtatgagtagatggattgaattgaaaaagagactacaaaagaatcagacaattgataaaagttggcaagaacagattacgaaagagaaagagcattggaggcaagtattactcaggataattgttgttgtcaaaagacttgcaaaaaataatttggcatttcatggagatagtgagaagctttatgtggaattttttttagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FCS

Protein Analysis

234

Amino Acids

28.27

Weight (kDa)

5.53

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca	FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica	MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis	pycom05g13550 pycom11g18320
rosa_chinensis	RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora	Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii	Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa	Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha	Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana	Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	689
AcuI	CTGAAG	1 cut(s)	261
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	5 cut(s)	127, 151, 212, 518, 523
AjnI	CCWGG	1 cut(s)	163
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	2 cut(s)	422, 679
AluI	AGCT	2 cut(s)	422, 679
Alw26I	GTCTC	4 cut(s)	192, 222, 351, 523
AlwI	GGATC	1 cut(s)	108
ApoI	RAATTY	1 cut(s)	689
AseI	ATTAAT	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	218
BccI	CCATC	1 cut(s)	504
BciT130I	CCWGG	1 cut(s)	165
BciVI	GTATCC	1 cut(s)	425
BcoDI	GTCTC	4 cut(s)	192, 222, 351, 523
BfaI	CTAG	3 cut(s)	332, 350, 423
BfrI	CTTAAG	1 cut(s)	464
BfuI	GTATCC	1 cut(s)	425
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	163, 451
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	163, 451
BseGI	GGATG	2 cut(s)	82, 397
BseMII	CTCAG	2 cut(s)	45, 625
BslFI	GGGAC	1 cut(s)	95
BsmAI	GTCTC	4 cut(s)	192, 222, 351, 523
BsmFI	GGGAC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	10
Bso31I	GGTCTC	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	64, 100, 319
BspCNI	CTCAG	2 cut(s)	46, 624
BspHI	TCATGA	2 cut(s)	10, 472
BspPI	GGATC	1 cut(s)	108
BspTI	CTTAAG	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	163, 451
BssMI	GATC	3 cut(s)	64, 100, 319
BssT1I	CCWWGG	1 cut(s)	451
Bst2UI	CCWGG	1 cut(s)	165
BstAFI	CTTAAG	1 cut(s)	464
BstC8I	GCNNGC	2 cut(s)	461, 492
BstDEI	CTNAG	2 cut(s)	54, 611
BstF5I	GGATG	2 cut(s)	82, 397
BstKTI	GATC	3 cut(s)	67, 103, 322
BstMAI	GTCTC	4 cut(s)	192, 222, 351, 523
BstMBI	GATC	3 cut(s)	64, 100, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	598
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	163
BstXI	CCANNNNNNTGG	1 cut(s)	171
BsuI	GTATCC	1 cut(s)	425
BtsCI	GGATG	2 cut(s)	82, 397
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	461, 492
CciI	TCATGA	2 cut(s)	10, 472
Cfr13I	GGNCC	1 cut(s)	218
CviAII	CATG	7 cut(s)	11, 20, 73, 233, 473, 491, 662
CviJI	RGCY	4 cut(s)	331, 422, 463, 679
CviKI_1	RGCY	4 cut(s)	331, 422, 463, 679
DdeI	CTNAG	2 cut(s)	54, 611
DpnI	GATC	3 cut(s)	66, 102, 321
DpnII	GATC	3 cut(s)	64, 100, 319
Eco130I	CCWWGG	1 cut(s)	451
Eco31I	GGTCTC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	451
FaeI	CATG	7 cut(s)	14, 23, 76, 236, 476, 494, 665
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	7 cut(s)	10, 19, 72, 232, 472, 490, 661
FauNDI	CATATG	1 cut(s)	42
FokI	GGATG	2 cut(s)	89, 404
FspBI	CTAG	3 cut(s)	332, 350, 423
Hin1II	CATG	7 cut(s)	14, 23, 76, 236, 476, 494, 665
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	3 cut(s)	16, 344, 541
HphI	GGTGA	1 cut(s)	35
Hpy188I	TCNGA	4 cut(s)	197, 280, 324, 546
Hpy188III	TCNNGA	5 cut(s)	11, 104, 350, 473, 613
HpyAV	CCTTC	1 cut(s)	382
HpyCH4V	TGCA	4 cut(s)	119, 375, 490, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	598
HpyF3I	CTNAG	2 cut(s)	54, 611
Hsp92II	CATG	7 cut(s)	14, 23, 76, 236, 476, 494, 665
Kzo9I	GATC	3 cut(s)	64, 100, 319
LpnPI	CCDG	4 cut(s)	150, 177, 445, 598
MaeI	CTAG	3 cut(s)	332, 350, 423
MalI	GATC	3 cut(s)	66, 102, 321
MboI	GATC	3 cut(s)	64, 100, 319
MboII	GAAGA	6 cut(s)	38, 41, 74, 95, 267, 457
MfeI	CAATTG	1 cut(s)	549
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	5 cut(s)	73, 209, 231, 254, 591
MseI	TTAA	4 cut(s)	138, 384, 405, 465
MspCI	CTTAAG	1 cut(s)	464
MspR9I	CCNGG	1 cut(s)	165
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	598
NdeI	CATATG	1 cut(s)	42
NdeII	GATC	3 cut(s)	64, 100, 319
NlaIII	CATG	7 cut(s)	14, 23, 76, 236, 476, 494, 665
NspI	RCATGY	1 cut(s)	494
PaeI	GCATGC	1 cut(s)	494
PagI	TCATGA	2 cut(s)	10, 472
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	16, 541
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PpuMI	RGGWCCY	1 cut(s)	218
PshBI	ATTAAT	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	218
PspPPI	RGGWCCY	1 cut(s)	218
SaqAI	TTAA	4 cut(s)	138, 384, 405, 465
Sau3AI	GATC	3 cut(s)	64, 100, 319
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	165
SetI	ASST	5 cut(s)	169, 220, 424, 453, 681
SinI	GGWCC	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SphI	GCATGC	1 cut(s)	494
SspI	AATATT	1 cut(s)	360
SspMI	CTAG	3 cut(s)	332, 350, 423
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	451
TaqI	TCGA	1 cut(s)	292
TfiI	GAWTC	2 cut(s)	16, 541
Tru1I	TTAA	4 cut(s)	138, 384, 405, 465
Tru9I	TTAA	4 cut(s)	138, 384, 405, 465
TscAI	CASTG	1 cut(s)	58
TspDTI	ATGAA	4 cut(s)	17, 75, 489, 650
TspRI	CASTG	1 cut(s)	58
Vha464I	CTTAAG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	218
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	1 cut(s)	689
XbaI	TCTAGA	1 cut(s)	349
XceI	RCATGY	1 cut(s)	494
XspI	CTAG	3 cut(s)	332, 350, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.