FvH4_1g29142

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000269
Physical Location & Seq
Forward (+)
21788717 .. 21789498
782 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29142.t1

Sequence Viewer

Length: 462 bp
ATGTCTGCTTCTCTTACAAACATTTTATTGCGAGAATTGTTCATACCAGTAAATTACAACCAAAGCCACTGGTTCCTATTGCTGTTGCGTCTTGATCTTGGAAGGGCCGAAATATGGGATAGCCTCCCACATAGATTCCACACTCGTTCGGAAATATGCAAAACTATTCTTCAAGTATTGGACTTTGCTGCCGGGGATATGGAATTCAAGTTCAAGAAGGGGCTCTTTGCACAATTTGAACTTCACGACCCGCCTCACCGTCCAATACAATATGACTCACACACTATTCGCATGAAGTTGATGATTGAGTTGGTGAGGAACAAATATAACCAATTATGGCCCACAATTGAGAGTAAAGTCAAGAAACAACTTTCTTCCCCACCGAAGAAGAGCAGTGTCAAGAACCCAGCTCGCCGATTGTCCATGAAGAGGCGTCCATCAGATGTTCGTCGCAGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

154

Amino Acids

18.07

Weight (kDa)

10.31

Isoelectric Point (pI)

71.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 433
AfiI CCNNNNNNNGG 2 cut(s) 114, 429
AgsI TTSAA 4 cut(s) 173, 208, 214, 239
AloI GAACNNNNNNTCC 2 cut(s) 194, 226
AluBI AGCT 1 cut(s) 410
AluI AGCT 1 cut(s) 410
AoxI GGCC 2 cut(s) 105, 338
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 105, 339
AsuC2I CCSGG 1 cut(s) 193
AsuHPI GGTGA 2 cut(s) 248, 325
BanII GRGCYC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 445
BcnI CCSGG 1 cut(s) 193
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 105, 339
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 193
BpuMI CCSGG 1 cut(s) 193
BsaHI GRCGYC 1 cut(s) 433
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 429
Bse1I ACTGG 2 cut(s) 47, 74
BseDI CCNNGG 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 114, 429
BseNI ACTGG 2 cut(s) 47, 74
BseXI GCAGC 1 cut(s) 175
BseYI CCCAGC 1 cut(s) 406
BshFI GGCC 2 cut(s) 107, 340
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 114, 429
BsnI GGCC 2 cut(s) 107, 340
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 1 cut(s) 251
BspANI GGCC 2 cut(s) 107, 340
BspLI GGNNCC 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 383
BsrI ACTGG 2 cut(s) 47, 74
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 1 cut(s) 94
BssNI GRCGYC 1 cut(s) 433
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 2 cut(s) 383, 422
BstACI GRCGYC 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 412
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 175
BsuRI GGCC 2 cut(s) 107, 340
BtsI GCAGTG 2 cut(s) 400, 460
BtsIMutI CAGTG 3 cut(s) 67, 400, 460
Cac8I GCNNGC 1 cut(s) 412
Cfr13I GGNCC 2 cut(s) 105, 339
CseI GACGC 2 cut(s) 77, 422
CviAII CATG 2 cut(s) 292, 424
CviJI RGCY 6 cut(s) 66, 107, 123, 223, 340, 410
CviKI_1 RGCY 6 cut(s) 66, 107, 123, 223, 340, 410
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eam1104I CTCTTC 2 cut(s) 383, 422
EarI CTCTTC 2 cut(s) 383, 422
Eco24I GRGCYC 1 cut(s) 225
EcoRI GAATTC 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 225
FaeI CATG 2 cut(s) 295, 427
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FatI CATG 2 cut(s) 291, 423
FauI CCCGC 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 189
GsaI CCCAGC 1 cut(s) 410
HaeIII GGCC 2 cut(s) 107, 340
HapII CCGG 1 cut(s) 192
HgaI GACGC 2 cut(s) 77, 422
Hin1I GRCGYC 1 cut(s) 433
Hin1II CATG 2 cut(s) 295, 427
HinfI GANTC 2 cut(s) 135, 275
HpaII CCGG 1 cut(s) 192
HphI GGTGA 2 cut(s) 248, 325
Hpy188I TCNGA 2 cut(s) 151, 442
Hpy188III TCNNGA 5 cut(s) 92, 214, 245, 361, 400
Hpy99I CGWCG 1 cut(s) 453
HpyAV CCTTC 2 cut(s) 96, 211
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4V TGCA 2 cut(s) 159, 230
Hsp92I GRCGYC 1 cut(s) 433
Hsp92II CATG 2 cut(s) 295, 427
Kzo9I GATC 1 cut(s) 94
LguI GCTCTTC 1 cut(s) 383
LpnPI CCDG 4 cut(s) 55, 60, 205, 420
Lsp1109I GCAGC 1 cut(s) 175
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 5 cut(s) 161, 366, 397, 400, 439
MfeI CAATTG 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 6 cut(s) 35, 52, 203, 233, 332, 345
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 4 cut(s) 134, 264, 309, 423
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 193
MunI CAATTG 1 cut(s) 345
NciI CCSGG 1 cut(s) 193
NdeII GATC 1 cut(s) 94
NlaIII CATG 2 cut(s) 295, 427
NlaIV GGNNCC 1 cut(s) 74
PciSI GCTCTTC 1 cut(s) 383
PfeI GAWTC 1 cut(s) 135
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 74
PspPI GGNCC 2 cut(s) 105, 339
SapI GCTCTTC 1 cut(s) 383
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 2 cut(s) 105, 339
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 1 cut(s) 225
SetI ASST 1 cut(s) 412
Sse9I AATT 6 cut(s) 35, 52, 203, 233, 332, 345
SsiI CCGC 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 260
TasI AATT 6 cut(s) 35, 52, 203, 233, 332, 345
TfiI GAWTC 1 cut(s) 135
TscAI CASTG 3 cut(s) 74, 400, 460
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 3 cut(s) 31, 308, 440
TspRI CASTG 3 cut(s) 74, 400, 460
XapI RAATTY 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.